* installing *source* package ‘fastei’ ... ** this is package ‘fastei’ version ‘0.0.0.12’ ** using staged installation ** libs using C compiler: ‘Debian clang version 21.1.8 (1+b1)’ using C++ compiler: ‘Debian clang version 21.1.8 (1+b1)’ clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c LP.c -o LP.o LP.c:23:20: warning: unused function 'row_copy' [-Wunused-function] 23 | static inline void row_copy(int n, const double *src, double *dst) | ^~~~~~~~ 1 warning generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c MCMC.c -o MCMC.o MCMC.c:183:14: warning: unused variable 'arraySize' [-Wunused-variable] 183 | uint32_t arraySize = M * S; | ^~~~~~~~~ MCMC.c:395:13: warning: unused variable 'W' [-Wunused-variable] 395 | Matrix *W = &ctx->W; // Get the W matrix | ^ MCMC.c:531:20: warning: unused variable 'qsum' [-Wunused-variable] 531 | double qsum = 0; | ^~~~ MCMC.c:517:13: warning: unused variable 'W' [-Wunused-variable] 517 | Matrix *W = &ctx->W; // Get the W matrix | ^ MCMC.c:522:12: warning: variable 'borrar' set but not used [-Wunused-but-set-variable] 522 | double borrar = 0; | ^ MCMC.c:523:12: warning: variable 'borrar2' set but not used [-Wunused-but-set-variable] 523 | double borrar2 = 0; | ^ MCMC.c:584:27: warning: unused variable 'currentMatrix' [-Wunused-variable] 584 | IntMatrix currentMatrix = currentSet->data[s]; // Z | ^~~~~~~~~~~~~ MCMC.c:552:13: warning: unused variable 'X' [-Wunused-variable] 552 | Matrix *X = &ctx->X; | ^ MCMC.c:554:16: warning: unused variable 'intX' [-Wunused-variable] 554 | IntMatrix *intX = &ctx->intX; | ^~~~ MCMC.c:555:16: warning: unused variable 'intW' [-Wunused-variable] 555 | IntMatrix *intW = &ctx->intW; | ^~~~ MCMC.c:557:13: warning: unused variable 'probabilities' [-Wunused-variable] 557 | Matrix *probabilities = &ctx->probabilities; | ^~~~~~~~~~~~~ 11 warnings generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bootstrap.c -o bootstrap.o bootstrap.c:134:9: warning: unused variable 'samples' [-Wunused-variable] 134 | int samples = bdim * bootiter; | ^~~~~~~ bootstrap.c:135:9: warning: unused variable 'matsize' [-Wunused-variable] 135 | int matsize = wmat->cols * xmat->rows; | ^~~~~~~ bootstrap.c:267:9: warning: unused variable 'matsize' [-Wunused-variable] 267 | int matsize = xmat->rows; | ^~~~~~~ 3 warnings generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dynamic_program.c -o dynamic_program.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c exact.c -o exact.o exact.c:241:10: warning: unused variable 'HSETS' [-Wunused-variable] 241 | Set *HSETS = ctx->hset; | ^~~~~ exact.c:285:10: warning: unused variable 'KSETS' [-Wunused-variable] 285 | Set *KSETS = ctx->kset; | ^~~~~ exact.c:431:10: warning: unused variable 'KSETS' [-Wunused-variable] 431 | Set *KSETS = ctx->kset; | ^~~~~ exact.c:432:10: warning: unused variable 'HSETS' [-Wunused-variable] 432 | Set *HSETS = ctx->hset; | ^~~~~ exact.c:590:10: warning: unused variable 'KSETS' [-Wunused-variable] 590 | Set *KSETS = ctx->kset; | ^~~~~ exact.c:591:10: warning: unused variable 'HSETS' [-Wunused-variable] 591 | Set *HSETS = ctx->hset; | ^~~~~ 6 warnings generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c main.c -o main.o main.c:145:16: warning: unused variable 'sum' [-Wunused-variable] 145 | double sum = 0.0; | ^~~ main.c:624:25: warning: variable 'status' set but not used [-Wunused-but-set-variable] 624 | int status; | ^ main.c:582:10: warning: unused variable 'mismatch' [-Wunused-variable] 582 | bool mismatch = hasMismatch(X, W); | ^~~~~~~~ main.c:202:13: warning: unused function 'checkQRowSums' [-Wunused-function] 202 | static void checkQRowSums(const EMContext *ctx, const char *stage, int iter) | ^~~~~~~~~~~~~ 4 warnings generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c multinomial.c -o multinomial.o multinomial.c:107:13: warning: unused variable 'X' [-Wunused-variable] 107 | Matrix *X = &ctx->X; | ^ multinomial.c:108:13: warning: unused variable 'W' [-Wunused-variable] 108 | Matrix *W = &ctx->W; | ^ multinomial.c:110:16: warning: unused variable 'intW' [-Wunused-variable] 110 | IntMatrix *intW = &ctx->intW; | ^~~~ 3 warnings generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c multivariate-cdf.c -o multivariate-cdf.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c multivariate-pdf.c -o multivariate-pdf.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils_hash.c -o utils_hash.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils_matrix.c -o utils_matrix.o utils_matrix.c:62:13: warning: unused function 'transposeMatrix' [-Wunused-function] 62 | static void transposeMatrix(const double *src, int rows, int cols, double *dst) | ^~~~~~~~~~~~~~~ 1 warning generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils_multivariate.c -o utils_multivariate.o utils_multivariate.c:230:10: warning: unused variable 'trans' [-Wunused-variable] 230 | char trans = 'N'; // (There's no separate transpose flag in dger, | ^~~~~ 1 warning generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c wrapper.cpp -o wrapper.o clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fastei.so LP.o MCMC.o RcppExports.o bootstrap.o dynamic_program.o exact.o main.o multinomial.o multivariate-cdf.o multivariate-pdf.o utils_hash.o utils_matrix.o utils_multivariate.o wrapper.o -llapack -L/home/hornik/tmp/R/lib -lRblas -L/usr/lib/llvm-21/lib/clang/21/lib/linux -L/usr/lib/llvm-21/lib -lflang_rt.runtime -lm -L/home/hornik/tmp/R/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/fastei.Rcheck/00LOCK-fastei/00new/fastei/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastei)