* installing *source* package 'fastei' ... ** this is package 'fastei' version '0.0.0.10' ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 14.2.0' using C++ compiler: 'g++.exe (GCC) 14.2.0' gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c LP.c -o LP.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c MCMC.c -o MCMC.o MCMC.c: In function 'generateOmegaSet': MCMC.c:182:14: warning: unused variable 'arraySize' [-Wunused-variable] 182 | uint32_t arraySize = M * S; | ^~~~~~~~~ MCMC.c: In function 'preMultinomialCoeff': MCMC.c:361:13: warning: unused variable 'W' [-Wunused-variable] 361 | Matrix *W = &ctx->W; // Get the W matrix | ^ MCMC.c: In function 'computeQ': MCMC.c:497:20: warning: unused variable 'qsum' [-Wunused-variable] 497 | double qsum = 0; | ^~~~ MCMC.c:483:13: warning: unused variable 'W' [-Wunused-variable] 483 | Matrix *W = &ctx->W; // Get the W matrix | ^ MCMC.c: In function 'computeQHitAndRun': MCMC.c:550:27: warning: unused variable 'currentMatrix' [-Wunused-variable] 550 | IntMatrix currentMatrix = currentSet->data[s]; // Z | ^~~~~~~~~~~~~ MCMC.c:523:13: warning: unused variable 'probabilities' [-Wunused-variable] 523 | Matrix *probabilities = &ctx->probabilities; | ^~~~~~~~~~~~~ MCMC.c:521:16: warning: unused variable 'intW' [-Wunused-variable] 521 | IntMatrix *intW = &ctx->intW; | ^~~~ MCMC.c:520:16: warning: unused variable 'intX' [-Wunused-variable] 520 | IntMatrix *intX = &ctx->intX; | ^~~~ MCMC.c:518:13: warning: unused variable 'X' [-Wunused-variable] 518 | Matrix *X = &ctx->X; | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c bootstrap.c -o bootstrap.o bootstrap.c: In function 'bootstrapA': bootstrap.c:133:9: warning: unused variable 'matsize' [-Wunused-variable] 133 | int matsize = wmat->cols * xmat->rows; | ^~~~~~~ bootstrap.c:132:9: warning: unused variable 'samples' [-Wunused-variable] 132 | int samples = bdim * bootiter; | ^~~~~~~ bootstrap.c: In function 'bootSingleMat': bootstrap.c:251:9: warning: unused variable 'matsize' [-Wunused-variable] 251 | int matsize = xmat->rows; | ^~~~~~~ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c dynamic_program.c -o dynamic_program.o dynamic_program.c: In function 'aggregateGroups': dynamic_program.c:488:31: warning: 'boundaries' may be used uninitialized [-Wmaybe-uninitialized] 488 | bootstrapMatrix = testBootstrap(ctx, &quality, set_method, xmat, wmat, boundaries, -1, bootiter, q_method, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 | p_method, convergence, log_convergence, maxIter, maxSeconds, *inputParams); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dynamic_program.c:451:10: note: 'boundaries' was declared here 451 | int *boundaries; | ^~~~~~~~~~ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c exact.c -o exact.o exact.c: In function 'generateHSets': exact.c:224:10: warning: unused variable 'HSETS' [-Wunused-variable] 224 | Set *HSETS = ctx->hset; | ^~~~~ exact.c: In function 'generateKSets': exact.c:268:10: warning: unused variable 'KSETS' [-Wunused-variable] 268 | Set *KSETS = ctx->kset; | ^~~~~ exact.c: In function 'recursion': exact.c:415:10: warning: unused variable 'HSETS' [-Wunused-variable] 415 | Set *HSETS = ctx->hset; | ^~~~~ exact.c:414:10: warning: unused variable 'KSETS' [-Wunused-variable] 414 | Set *KSETS = ctx->kset; | ^~~~~ exact.c: In function 'computeQExact': exact.c:584:13: warning: unused variable 'W' [-Wunused-variable] 584 | Matrix *W = &ctx->W; | ^ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c main.c -o main.o main.c: In function 'projectQ': main.c:497:25: warning: variable 'status' set but not used [-Wunused-but-set-variable] 497 | int status; | ^~~~~~ main.c: In function 'EMAlgoritm': main.c:634:50: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 634 | if (i >= 1 && i >= config.params.miniter && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 635 | (fabs(newLL - oldLL) < LLconvergence || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 | convergeMatrix(&oldProbabilities, &ctx->probabilities, convergence)) || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c multinomial.c -o multinomial.o multinomial.c: In function 'computeQMultinomial': multinomial.c:110:16: warning: unused variable 'intW' [-Wunused-variable] 110 | IntMatrix *intW = &ctx->intW; | ^~~~ multinomial.c:108:13: warning: unused variable 'W' [-Wunused-variable] 108 | Matrix *W = &ctx->W; | ^ multinomial.c:107:13: warning: unused variable 'X' [-Wunused-variable] 107 | Matrix *X = &ctx->X; | ^ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c multivariate-cdf.c -o multivariate-cdf.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c multivariate-pdf.c -o multivariate-pdf.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c utils_hash.c -o utils_hash.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c utils_matrix.c -o utils_matrix.o utils_matrix.c:62:13: warning: 'transposeMatrix' defined but not used [-Wunused-function] 62 | static void transposeMatrix(const double *src, int rows, int cols, double *dst) | ^~~~~~~~~~~~~~~ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c utils_multivariate.c -o utils_multivariate.o utils_multivariate.c: In function 'getAverageConditional': utils_multivariate.c:230:10: warning: unused variable 'trans' [-Wunused-variable] 230 | char trans = 'N'; // (There's no separate transpose flag in dger, | ^~~~~ In file included from D:/RCompile/recent/R/include/R.h:78, from utils_multivariate.c:24: utils_multivariate.c: In function 'getMahanalobisDist': utils_multivariate.c:321:14: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 321 | F77_CALL(dsymv)(&uplo, &n, &alpha, inverseSigma->data, &lda, diff, &incx, &beta, temp, &incy FCONE); | ^ D:/RCompile/recent/R/include/R_ext/RS.h:98:25: note: in definition of macro 'F77_CALL' 98 | # define F77_CALL(x) x ## _ | ^ D:/RCompile/recent/R/include/R_ext/BLAS.h:142:10: note: by argument 6 of type 'const double *' to 'dsymv_' declared here 142 | F77_NAME(dsymv)(const char *uplo, const BLAS_INT *n, const double *alpha, | ^~~~~ D:/RCompile/recent/R/include/R_ext/RS.h:98:25: note: in definition of macro 'F77_CALL' 98 | # define F77_CALL(x) x ## _ | ^ D:/RCompile/recent/R/include/R_ext/BLAS.h:142:1: note: in expansion of macro 'F77_NAME' 142 | F77_NAME(dsymv)(const char *uplo, const BLAS_INT *n, const double *alpha, | ^~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c wrapper.cpp -o wrapper.o g++ -std=gnu++17 -shared -s -static-libgcc -o fastei.dll tmp.def LP.o MCMC.o RcppExports.o bootstrap.o dynamic_program.o exact.o main.o multinomial.o multivariate-cdf.o multivariate-pdf.o utils_hash.o utils_matrix.o utils_multivariate.o wrapper.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -fopenmp -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-fastei/00new/fastei/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastei)