testthat::test_that( "1d mean", { set.seed(1) data <- c(rnorm(300, 0, 100), rnorm(400, 100, 100), rnorm(300, 0, 100)) result_mean <- fastcpd.mean(data) testthat::expect_equal(result_mean@cp_set, c(300, 702)) } ) testthat::test_that( "1d variance", { set.seed(1) data <- c(rnorm(300, 0, 1), rnorm(400, 0, 100), rnorm(300, 0, 1)) result_variance <- fastcpd.variance(data) testthat::expect_equal(result_variance@cp_set, c(300, 700)) } ) testthat::test_that( "1d mv", { set.seed(1) data <- c( rnorm(300, 0, 1), rnorm(400, 10, 1), rnorm(300, 0, 50), rnorm(300, 0, 1), rnorm(400, 10, 1), rnorm(300, 10, 50) ) result_meanvariance <- fastcpd.meanvariance(data) testthat::expect_equal( result_meanvariance@cp_set, c(300, 700, 1000, 1300, 1700) ) } ) testthat::test_that( "1d custom multiple epochs", { set.seed(1) p <- 1 x <- matrix(rnorm(300 * p, 0, 1), ncol = p) theta <- rbind(rnorm(p, 0, 1), rnorm(p, 4, 1)) y <- c( rbinom(150, 1, 1 / (1 + exp(-x[1:150, ] * theta[1, ]))), rbinom(150, 1, 1 / (1 + exp(-x[151:300, ] * theta[2, ]))) ) logistic_loss <- function(data, theta) { x <- data[, -1] y <- data[, 1] u <- x * c(theta) nll <- -y * u + log(1 + exp(u)) nll[u > 10] <- -y[u > 10] * u[u > 10] + u[u > 10] sum(nll) } logistic_loss_gradient <- function(data, theta) { x <- data[nrow(data), -1] y <- data[nrow(data), 1] c(-(y - 1 / (1 + exp(-x * theta)))) * x } logistic_loss_hessian <- function(data, theta) { x <- data[nrow(data), -1] prob <- 1 / (1 + exp(-x * theta)) (x %o% x) * c((1 - prob) * prob) } result <- fastcpd( formula = y ~ . - 1, data = data.frame(y = y, x = x), cost = logistic_loss, cost_gradient = logistic_loss_gradient, cost_hessian = logistic_loss_hessian, k = function(x) if (x < 10) 1 else 0 ) testthat::expect_equal(result@cp_set, 147) } ) testthat::test_that( "warm start", { set.seed(1) p <- 1 x <- matrix(rnorm(300 * p, 0, 1), ncol = p) theta <- rbind(rnorm(p, 0, 1), rnorm(p, 4, 1)) y <- c( rbinom(150, 1, 1 / (1 + exp(-x[1:150, ] * theta[1, ]))), rbinom(150, 1, 1 / (1 + exp(-x[151:300, ] * theta[2, ]))) ) result <- suppressWarnings( fastcpd.binomial( data.frame(y = y, x = x), vanilla_percentage = 1, warm_start = TRUE ) ) testthat::expect_equal(result@cp_set, 134) } ) testthat::test_that( "variance estimation", { set.seed(1) testthat::expect_message( try(fastcpd.ar(c(0, 0, 0, 0, 0, 0), 2), silent = TRUE), "Variance estimation failed for block 1." ) } ) testthat::test_that("beta x2", { testthat::expect_equal( fastcpd.mean(well_log, beta = log(length(well_log)))@cp_set, c(572, 1039, 1424, 1661, 1842, 2023, 2476, 2744, 3709, 3820) ) })