* using log directory ‘/srv/hornik/tmp/CRAN/fabR.Rcheck’ * using R Under development (unstable) (2023-09-26 r85226) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (15) GNU Fortran (Debian 13.2.0-4) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘fabR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘fabR’ version ‘2.0.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/5s] NOTE Maintainer: ‘Guillaume Fabre ’ Found the following (possibly) invalid URLs: URL: https://github.com/jtr13/bookdown-template/archive/refs/heads/master.zip From: NEWS.md Status: 404 Message: Not Found * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘fabR’ can be installed ... [4s/4s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/5s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [5s/5s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [200s/201s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘fabR-vignette.Rmd’ using rmarkdown trying URL 'https://cloud.r-project.org/src/contrib/colorspace_2.1-0.tar.gz' Content type 'application/x-gzip' length 2116339 bytes (2.0 MB) ================================================== downloaded 2.0 MB trying URL 'https://cloud.r-project.org/src/contrib/farver_2.1.1.tar.gz' Content type 'application/x-gzip' length 1274363 bytes (1.2 MB) ================================================== downloaded 1.2 MB trying URL 'https://cloud.r-project.org/src/contrib/labeling_0.4.3.tar.gz' Content type 'application/x-gzip' length 10167 bytes ================================================== downloaded 10167 bytes trying URL 'https://cloud.r-project.org/src/contrib/munsell_0.5.0.tar.gz' Content type 'application/x-gzip' length 182653 bytes (178 KB) ================================================== downloaded 178 KB trying URL 'https://cloud.r-project.org/src/contrib/RColorBrewer_1.1-3.tar.gz' Content type 'application/x-gzip' length 11638 bytes (11 KB) ================================================== downloaded 11 KB trying URL 'https://cloud.r-project.org/src/contrib/viridisLite_0.4.2.tar.gz' Content type 'application/x-gzip' length 1267121 bytes (1.2 MB) ================================================== downloaded 1.2 MB trying URL 'https://cloud.r-project.org/src/contrib/Rcpp_1.0.11.tar.gz' Content type 'application/x-gzip' length 2994004 bytes (2.9 MB) ================================================== downloaded 2.9 MB trying URL 'https://cloud.r-project.org/src/contrib/SnowballC_0.7.1.tar.gz' Content type 'application/x-gzip' length 405547 bytes (396 KB) ================================================== downloaded 396 KB trying URL 'https://cloud.r-project.org/src/contrib/later_1.3.1.tar.gz' Content type 'application/x-gzip' length 63641 bytes (62 KB) ================================================== downloaded 62 KB trying URL 'https://cloud.r-project.org/src/contrib/lazyeval_0.2.2.tar.gz' Content type 'application/x-gzip' length 83482 bytes (81 KB) ================================================== downloaded 81 KB trying URL 'https://cloud.r-project.org/src/contrib/gtable_0.3.4.tar.gz' Content type 'application/x-gzip' length 130100 bytes (127 KB) ================================================== downloaded 127 KB trying URL 'https://cloud.r-project.org/src/contrib/isoband_0.2.7.tar.gz' Content type 'application/x-gzip' length 1591812 bytes (1.5 MB) ================================================== downloaded 1.5 MB trying URL 'https://cloud.r-project.org/src/contrib/scales_1.2.1.tar.gz' Content type 'application/x-gzip' length 270609 bytes (264 KB) ================================================== downloaded 264 KB trying URL 'https://cloud.r-project.org/src/contrib/janeaustenr_1.0.0.tar.gz' Content type 'application/x-gzip' length 1174356 bytes (1.1 MB) ================================================== downloaded 1.1 MB trying URL 'https://cloud.r-project.org/src/contrib/tokenizers_0.3.0.tar.gz' Content type 'application/x-gzip' length 458876 bytes (448 KB) ================================================== downloaded 448 KB trying URL 'https://cloud.r-project.org/src/contrib/htmlwidgets_1.6.2.tar.gz' Content type 'application/x-gzip' length 867472 bytes (847 KB) ================================================== downloaded 847 KB trying URL 'https://cloud.r-project.org/src/contrib/httpuv_1.6.11.tar.gz' Content type 'application/x-gzip' length 1874829 bytes (1.8 MB) ================================================== downloaded 1.8 MB trying URL 'https://cloud.r-project.org/src/contrib/crosstalk_1.2.0.tar.gz' Content type 'application/x-gzip' length 296495 bytes (289 KB) ================================================== downloaded 289 KB trying URL 'https://cloud.r-project.org/src/contrib/promises_1.2.1.tar.gz' Content type 'application/x-gzip' length 3151071 bytes (3.0 MB) ================================================== downloaded 3.0 MB trying URL 'https://cloud.r-project.org/src/contrib/ggplot2_3.4.3.tar.gz' Content type 'application/x-gzip' length 2190947 bytes (2.1 MB) ================================================== downloaded 2.1 MB trying URL 'https://cloud.r-project.org/src/contrib/tidytext_0.4.1.tar.gz' Content type 'application/x-gzip' length 3138568 bytes (3.0 MB) ================================================== downloaded 3.0 MB trying URL 'https://cloud.r-project.org/src/contrib/DT_0.29.tar.gz' Content type 'application/x-gzip' length 1458670 bytes (1.4 MB) ================================================== downloaded 1.4 MB trying URL 'https://cloud.r-project.org/src/contrib/fabR_1.1.1.tar.gz' Content type 'application/x-gzip' length 41034 bytes (40 KB) ================================================== downloaded 40 KB * installing *source* package ‘colorspace’ ... ** package ‘colorspace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (15)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colorspace.c -o colorspace.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o colorspace.so colorspace.o init.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/00LOCK-colorspace/00new/colorspace/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colorspace) * installing *source* package ‘farver’ ... ** package ‘farver’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (15)’ using C++11 clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c ColorSpace.cpp -o ColorSpace.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c Comparison.cpp -o Comparison.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c Conversion.cpp -o Conversion.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c encode.cpp -o encode.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c farver.cpp -o farver.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c init.cpp -o init.o clang++-16 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o farver.so ColorSpace.o Comparison.o Conversion.o encode.o farver.o init.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/00LOCK-farver/00new/farver/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (farver) * installing *source* package ‘labeling’ ... ** package ‘labeling’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (labeling) * installing *source* package ‘RColorBrewer’ ... ** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RColorBrewer) * installing *source* package ‘viridisLite’ ... ** package ‘viridisLite’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (viridisLite) * installing *source* package ‘Rcpp’ ... ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (15)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api.cpp -o api.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c attributes.cpp -o attributes.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c barrier.cpp -o barrier.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c date.cpp -o date.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c module.cpp -o module.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_init.cpp -o rcpp_init.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) * installing *source* package ‘SnowballC’ ... ** package ‘SnowballC’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (15)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SnowballC_init.c -o SnowballC_init.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api.c -o api.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libstemmer_utf8.c -o libstemmer_utf8.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem.c -o stem.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_arabic.c -o stem_UTF_8_arabic.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_basque.c -o stem_UTF_8_basque.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_catalan.c -o stem_UTF_8_catalan.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_danish.c -o stem_UTF_8_danish.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_dutch.c -o stem_UTF_8_dutch.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_english.c -o stem_UTF_8_english.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_finnish.c -o stem_UTF_8_finnish.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_french.c -o stem_UTF_8_french.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_german.c -o stem_UTF_8_german.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_greek.c -o stem_UTF_8_greek.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_hindi.c -o stem_UTF_8_hindi.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_hungarian.c -o stem_UTF_8_hungarian.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_indonesian.c -o stem_UTF_8_indonesian.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_irish.c -o stem_UTF_8_irish.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_italian.c -o stem_UTF_8_italian.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_lithuanian.c -o stem_UTF_8_lithuanian.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_nepali.c -o stem_UTF_8_nepali.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_norwegian.c -o stem_UTF_8_norwegian.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_porter.c -o stem_UTF_8_porter.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_portuguese.c -o stem_UTF_8_portuguese.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_romanian.c -o stem_UTF_8_romanian.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_russian.c -o stem_UTF_8_russian.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_spanish.c -o stem_UTF_8_spanish.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_swedish.c -o stem_UTF_8_swedish.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_tamil.c -o stem_UTF_8_tamil.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stem_UTF_8_turkish.c -o stem_UTF_8_turkish.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utilities.c -o utilities.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o SnowballC.so SnowballC_init.o api.o libstemmer_utf8.o stem.o stem_UTF_8_arabic.o stem_UTF_8_basque.o stem_UTF_8_catalan.o stem_UTF_8_danish.o stem_UTF_8_dutch.o stem_UTF_8_english.o stem_UTF_8_finnish.o stem_UTF_8_french.o stem_UTF_8_german.o stem_UTF_8_greek.o stem_UTF_8_hindi.o stem_UTF_8_hungarian.o stem_UTF_8_indonesian.o stem_UTF_8_irish.o stem_UTF_8_italian.o stem_UTF_8_lithuanian.o stem_UTF_8_nepali.o stem_UTF_8_norwegian.o stem_UTF_8_porter.o stem_UTF_8_portuguese.o stem_UTF_8_romanian.o stem_UTF_8_russian.o stem_UTF_8_spanish.o stem_UTF_8_swedish.o stem_UTF_8_tamil.o stem_UTF_8_turkish.o utilities.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/00LOCK-SnowballC/00new/SnowballC/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SnowballC) * installing *source* package ‘lazyeval’ ... ** package ‘lazyeval’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (15)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c expr.c -o expr.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c interp.c -o interp.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lazy.c -o lazy.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c name.c -o name.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/00LOCK-lazyeval/00new/lazyeval/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lazyeval) * installing *source* package ‘gtable’ ... ** package ‘gtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtable) * installing *source* package ‘isoband’ ... ** package ‘isoband’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (15)’ using C++11 clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c clip-lines.cpp -o clip-lines.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c init.cpp -o init.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c isoband.cpp -o isoband.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c polygon.cpp -o polygon.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c separate-polygons.cpp -o separate-polygons.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-clip-lines.cpp -o test-clip-lines.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-runner.cpp -o test-runner.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-separate-polygons.cpp -o test-separate-polygons.o clang++-16 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o isoband.so clip-lines.o init.o isoband.o polygon.o separate-polygons.o test-clip-lines.o test-runner.o test-separate-polygons.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/00LOCK-isoband/00new/isoband/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (isoband) * installing *source* package ‘janeaustenr’ ... ** package ‘janeaustenr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (janeaustenr) * installing *source* package ‘htmlwidgets’ ... ** package ‘htmlwidgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmlwidgets) * installing *source* package ‘munsell’ ... ** package ‘munsell’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (munsell) * installing *source* package ‘later’ ... ** package ‘later’ successfully unpacked and MD5 sums checked ** using staged installation Running configure script -latomic linker flag not needed. ** libs using C compiler: ‘Debian clang version 16.0.6 (15)’ using C++ compiler: ‘Debian clang version 16.0.6 (15)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c callback_registry.cpp -o callback_registry.o In file included from callback_registry.cpp:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c debug.cpp -o debug.o debug.cpp:31:11: warning: variable 'res' set but not used [-Wunused-but-set-variable] ssize_t res = write(STDERR_FILENO, buf, n); ^ 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later.cpp -o later.o In file included from later.cpp:1: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later_posix.cpp -o later_posix.o In file included from later_posix.cpp:9: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ later_posix.cpp:247:13: warning: unused variable 'ret' [-Wunused-variable] ssize_t ret = write(dummy_pipe_in, "a", 1); ^ 2 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later_win32.cpp -o later_win32.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timer_posix.cpp -o timer_posix.o In file included from timer_posix.cpp:6: In file included from ./timer_posix.h:8: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timestamp_unix.cpp -o timestamp_unix.o In file included from timestamp_unix.cpp:5: In file included from ./timeconv.h:9: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timestamp_win32.cpp -o timestamp_win32.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tinycthread.c -o tinycthread.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o later.so RcppExports.o callback_registry.o debug.o init.o later.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o tinycthread.o -pthread -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/00LOCK-later/00new/later/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (later) * installing *source* package ‘tokenizers’ ... ** package ‘tokenizers’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (15)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c shingle_ngrams.cpp -o shingle_ngrams.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c skip_ngrams.cpp -o skip_ngrams.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o tokenizers.so RcppExports.o shingle_ngrams.o skip_ngrams.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/00LOCK-tokenizers/00new/tokenizers/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tokenizers) * installing *source* package ‘crosstalk’ ... ** package ‘crosstalk’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crosstalk) * installing *source* package ‘scales’ ... ** package ‘scales’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scales) * installing *source* package ‘promises’ ... ** package ‘promises’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (15)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c promise_task.cpp -o promise_task.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o promises.so RcppExports.o promise_task.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/00LOCK-promises/00new/promises/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (promises) ERROR: dependency ‘Matrix’ is not available for package ‘tidytext’ * removing ‘/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/tidytext’ * installing *source* package ‘httpuv’ ... ** package ‘httpuv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (15)’ using C++ compiler: ‘Debian clang version 16.0.6 (15)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c RcppExports-legacy.cpp -o RcppExports-legacy.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c callback.cpp -o callback.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c callbackqueue.cpp -o callbackqueue.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c filedatasource-unix.cpp -o filedatasource-unix.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c filedatasource-win.cpp -o filedatasource-win.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c fs.cpp -o fs.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c gzipdatasource.cpp -o gzipdatasource.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c http.cpp -o http.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httprequest.cpp -o httprequest.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httpresponse.cpp -o httpresponse.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httpuv.cpp -o httpuv.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c mime.cpp -o mime.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c socket.cpp -o socket.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c staticpath.cpp -o staticpath.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c thread.cpp -o thread.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c timegm.cpp -o timegm.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c utils.cpp -o utils.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c uvutil.cpp -o uvutil.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c webapplication.cpp -o webapplication.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-base.cpp -o websockets-base.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-hixie76.cpp -o websockets-hixie76.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-hybi03.cpp -o websockets-hybi03.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-ietf.cpp -o websockets-ietf.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets.cpp -o websockets.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c winutils.cpp -o winutils.o cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4 cd libuv; \ if ! command -v automake >/dev/null 2>&1 ; then \ echo "automake not found. Touching files so configure will not try to run automake."; \ touch aclocal.m4; \ touch -r aclocal.m4 configure Makefile.in; \ else \ echo "automake found. Running autoupdate and autogen.sh."; \ autoupdate; \ sh autogen.sh; \ fi; \ chmod +x configure; \ CC="clang-16 " CFLAGS="-g -O3 -Wall -pedantic -fpic -fvisibility=hidden -DNDEBUG" CPPFLAGS="-I/usr/local/include" AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-O1" ./configure "--quiet" automake found. Running autoupdate and autogen.sh. + libtoolize --copy libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltversion.m4' + aclocal -I m4 + autoconf configure.ac:46: warning: $as_echo is obsolete; use AS_ECHO(["message"]) instead lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... m4/ax_pthread.m4:88: AX_PTHREAD is expanded from... configure.ac:46: the top level + automake --add-missing --copy make --directory=libuv \ HAVE_DTRACE=0 make[1]: Entering directory '/tmp/RtmpK2ZokX/working_dir/RtmpKXWqFp/R.INSTALL23539d1207b232/httpuv/src/libuv' CC src/libuv_la-fs-poll.lo CC src/libuv_la-idna.lo CC src/libuv_la-inet.lo CC src/libuv_la-random.lo CC src/libuv_la-strscpy.lo CC src/libuv_la-threadpool.lo CC src/libuv_la-timer.lo CC src/libuv_la-uv-data-getter-setters.lo CC src/libuv_la-uv-common.lo CC src/libuv_la-version.lo CC src/unix/libuv_la-async.lo CC src/unix/libuv_la-core.lo CC src/unix/libuv_la-dl.lo CC src/unix/libuv_la-fs.lo CC src/unix/libuv_la-getaddrinfo.lo CC src/unix/libuv_la-getnameinfo.lo CC src/unix/libuv_la-loop-watcher.lo CC src/unix/libuv_la-loop.lo CC src/unix/libuv_la-pipe.lo CC src/unix/libuv_la-poll.lo CC src/unix/libuv_la-process.lo CC src/unix/libuv_la-random-devurandom.lo CC src/unix/libuv_la-signal.lo CC src/unix/libuv_la-stream.lo CC src/unix/libuv_la-tcp.lo CC src/unix/libuv_la-thread.lo src/unix/thread.c:195:24: warning: comparison of integers of different signs: 'rlim_t' (aka 'unsigned long') and 'long' [-Wsign-compare] if (lim.rlim_cur >= PTHREAD_STACK_MIN) ~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~ src/unix/thread.c:243:20: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'long' [-Wsign-compare] if (stack_size < PTHREAD_STACK_MIN) ~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~ 2 warnings generated. CC src/unix/libuv_la-tty.lo CC src/unix/libuv_la-udp.lo CC src/unix/libuv_la-linux-core.lo CC src/unix/libuv_la-linux-inotify.lo CC src/unix/libuv_la-linux-syscalls.lo CC src/unix/libuv_la-procfs-exepath.lo CC src/unix/libuv_la-proctitle.lo CC src/unix/libuv_la-random-getrandom.lo CC src/unix/libuv_la-random-sysctl-linux.lo CC src/unix/libuv_la-epoll.lo CCLD libuv.la make[1]: Leaving directory '/tmp/RtmpK2ZokX/working_dir/RtmpKXWqFp/R.INSTALL23539d1207b232/httpuv/src/libuv' clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c http-parser/http_parser.c -o http-parser/http_parser.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c sha1/sha1.c -o sha1/sha1.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/Rcpp/include' -I'/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c base64/base64.cpp -o base64/base64.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o httpuv.so RcppExports-legacy.o RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o fs.o gzipdatasource.o http.o httprequest.o httpresponse.o httpuv.o md5.o mime.o socket.o staticpath.o thread.o timegm.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o winutils.o ./libuv/.libs/libuv.a ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -pthread -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/00LOCK-httpuv/00new/httpuv/libs ** R ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httpuv) ERROR: dependencies ‘MASS’, ‘mgcv’ are not available for package ‘ggplot2’ * removing ‘/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/ggplot2’ * installing *source* package ‘DT’ ... ** package ‘DT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DT) ERROR: dependencies ‘ggplot2’, ‘tidytext’ are not available for package ‘fabR’ * removing ‘/tmp/RtmpK2ZokX/RLIBS_234958433ee1fd/fabR’ The downloaded source packages are in '/tmp/RtmpK2ZokX/working_dir/RtmpvjmYQB/downloaded_packages' Quitting from lines 45-47 [unnamed-chunk-2] (fabR-vignette.Rmd) Error: processing vignette 'fabR-vignette.Rmd' failed with diagnostics: there is no package called 'fabR' --- failed re-building ‘fabR-vignette.Rmd’ SUMMARY: processing the following file failed: ‘fabR-vignette.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE