* using log directory ‘/srv/hornik/tmp/CRAN/fabPrediction.Rcheck’ * using R Under development (unstable) (2024-03-10 r86088) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘fabPrediction/DESCRIPTION’ ... OK * this is package ‘fabPrediction’ version ‘3.0.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [2s/3s] NOTE Maintainer: ‘Elizabeth Bersson ’ New submission Non-FOSS package license (`use_mit_license()`, `use_gpl3_license()` or friends to pick a license) Possibly misspelled words in DESCRIPTION: Bersson (11:3) The Description field should not start with the package name, 'This package' or similar. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... NOTE Found the following non-portable file paths: fabPrediction/vignettes/fabPrediction-vignette_cache/html/unnamed-chunk-6_aa60d109ccca692ddea3f4389dad8ea6.RData fabPrediction/vignettes/fabPrediction-vignette_cache/html/unnamed-chunk-6_aa60d109ccca692ddea3f4389dad8ea6.rdb fabPrediction/vignettes/fabPrediction-vignette_cache/html/unnamed-chunk-6_aa60d109ccca692ddea3f4389dad8ea6.rdx fabPrediction/vignettes/fabPrediction-vignette_cache/latex/unnamed-chunk-6_039d2f72c75e5b37ef1da5c4e70e9ab9.RData fabPrediction/vignettes/fabPrediction-vignette_cache/latex/unnamed-chunk-6_039d2f72c75e5b37ef1da5c4e70e9ab9.rdb fabPrediction/vignettes/fabPrediction-vignette_cache/latex/unnamed-chunk-6_039d2f72c75e5b37ef1da5c4e70e9ab9.rdx Tarballs are only required to store paths of up to 100 bytes and cannot store those of more than 256 bytes, with restrictions including to 100 bytes for the final component. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for sufficient/correct file permissions ... OK * checking whether package ‘fabPrediction’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... WARNING Non-standard license specification: `use_mit_license()`, `use_gpl3_license()` or friends to pick a license Standardizable: FALSE * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... WARNING plot: function(x, ...) plot.pred: function(obj, plot.all, main, xlab, cex.axis) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] NOTE bayesNormalPrediction: no visible global function definition for ‘var’ bayesNormalPrediction: no visible global function definition for ‘qt’ init.MoM: no visible global function definition for ‘median’ normalPrediction: no visible global function definition for ‘qt’ normalPrediction: no visible global function definition for ‘sd’ plot.pred: no visible global function definition for ‘stripchart’ plot.pred: no visible global function definition for ‘text’ plugin_values: no visible binding for global variable ‘var’ plugin_values: no visible global function definition for ‘optim’ plugin_values : mll2: no visible global function definition for ‘dnorm’ plugin_values: no visible global function definition for ‘var’ plugin_values: no visible binding for global variable ‘Var’ rdirichlet : : no visible global function definition for ‘rgamma’ Undefined global functions or variables: Var dnorm median optim qt rgamma sd stripchart text var Consider adding importFrom("graphics", "stripchart", "text") importFrom("stats", "dnorm", "median", "optim", "qt", "rgamma", "sd", "var") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'plot.pred.Rd' ‘main’ ‘xlab’ ‘cex.axis’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': ‘fabPrediction-vignette.Rmd’ ‘fabPrediction-vignette.html’ ‘fabPrediction-vignette.log’ ‘fabPrediction-vignette.tex’ ‘fabPrediction-vignette_cache/html/__packages’ ‘fabPrediction-vignette_cache/html/unnamed-chunk-6_aa60d109ccca692ddea3f4389dad8ea6.RData’ ‘fabPrediction-vignette_cache/html/unnamed-chunk-6_aa60d109ccca692ddea3f4389dad8ea6.rdb’ ‘fabPrediction-vignette_cache/html/unnamed-chunk-6_aa60d109ccca692ddea3f4389dad8ea6.rdx’ ‘fabPrediction-vignette_cache/latex/__packages’ ‘fabPrediction-vignette_cache/latex/unnamed-chunk-6_039d2f72c75e5b37ef1da5c4e70e9ab9.RData’ ‘fabPrediction-vignette_cache/latex/unnamed-chunk-6_039d2f72c75e5b37ef1da5c4e70e9ab9.rdb’ ‘fabPrediction-vignette_cache/latex/unnamed-chunk-6_039d2f72c75e5b37ef1da5c4e70e9ab9.rdx’ ‘fabPrediction-vignette_files/figure-html/plotdta-1.png’ ‘fabPrediction-vignette_files/figure-html/plotfab-1.png’ ‘fabPrediction-vignette_files/figure-html/unnamed-chunk-1-1.png’ ‘fabPrediction-vignette_files/figure-html/unnamed-chunk-3-1.png’ ‘fabPrediction-vignette_files/figure-html/unnamed-chunk-4-1.png’ ‘fabPrediction-vignette_files/figure-html/unnamed-chunk-5-1.png’ ‘fabPrediction-vignette_files/figure-html/unnamed-chunk-7-1.png’ ‘fabPrediction-vignette_files/figure-latex/plotdta-1.pdf’ ‘fabPrediction-vignette_files/figure-latex/plotfab-1.pdf’ ‘fabPrediction-vignette_files/figure-latex/unnamed-chunk-1-1.pdf’ ‘fabPrediction-vignette_files/figure-latex/unnamed-chunk-3-1.pdf’ ‘fabPrediction-vignette_files/figure-latex/unnamed-chunk-4-1.pdf’ ‘fabPrediction-vignette_files/figure-latex/unnamed-chunk-5-1.pdf’ ‘fabPrediction-vignette_files/figure-latex/unnamed-chunk-7-1.pdf’ ‘rsconnect/documents/fabPrediction-vignette.Rmd/rpubs.com/rpubs/Document.dcf’ Package has no Sweave vignette sources and no VignetteBuilder field. The following files look like leftovers/mistakes: ‘fabPrediction-vignette.log’ Please remove them from your package. * checking examples ... NONE * checking package vignettes ... NOTE Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file? * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for code which exercises the package ... WARNING No examples, no tests, no vignettes * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 5 WARNINGs, 4 NOTEs