* using log directory ‘/srv/hornik/tmp/CRAN/fMRIscrub.Rcheck’
* using R Under development (unstable) (2023-10-18 r85349)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (15)
    GNU Fortran (Debian 13.2.0-4) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘fMRIscrub/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fMRIscrub’ version ‘0.14.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] Note_to_CRAN_maintainers
Maintainer: ‘Amanda Mejia <mandy.mejia@gmail.com>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fMRIscrub’ can be installed ... [7s/7s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking examples ... [5s/5s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [15s/15s] ERROR
  Running ‘testthat.R’ [14s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # Build --> Install and Restart
  > # [Edit this] path to the Workbench for your computer.
  > my_wb <- "../../workbench"
  > 
  > library(testthat)
  > library(ciftiTools)
  > if (interactive()) { ciftiTools.setOption("wb_path", my_wb) }
  > library(fMRItools)
  > 
  > need_pkg <- c("ciftiTools", "fMRIscrub", "ggplot2", "cowplot", "fastICA")
  > have_pkgs <- vapply(need_pkg, function(q){requireNamespace(q, quietly=TRUE)}, FALSE)
  > 
  > if (all(have_pkgs)) {
  +   library(ciftiTools)
  +   if (interactive()) { ciftiTools.setOption("wb_path", my_wb) }
  + 
  +   library(fMRIscrub)
  +   library(ggplot2)
  +   library(cowplot)
  +   library(fastICA)
  + 
  +   test_check("fMRIscrub")
  + }
  Checking for missing, infinite, and constant data.
  Performing nuisance regression.
  Centering and scaling the data columns.
  Computing PESEL.
  Computing PCA.
  Computing ICA.
  Computing leverage.
  Checking for missing, infinite, and constant data.
  Performing nuisance regression.
  Centering and scaling the data columns.
  Computing PESEL.
  Computing ICA.
  Computing leverage.
  Checking for missing, infinite, and constant data.
  Performing nuisance regression.
  Scaling the data columns.
  Computing PCA.
  Computing leverage.
  [ FAIL 2 | WARN 0 | SKIP 2 | PASS 9 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • Connectome Workbench is not available. (1): 'test-test_scrubbing.R:55:5'
  • empty test (1): 'test-test_scrubbing.R:45:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-test_all_methods.R:30:3'): pscrub works ────────────────────────
  Error in `fastICA::fastICA(t(X), maxK_ICA, method = "C")`: BLAS/LAPACK routine 'DGESDD' gave error code -5
  Backtrace:
       ▆
    1. ├─testthat::expect_warning(...) at test-test_all_methods.R:30:2
    2. │ └─testthat:::quasi_capture(...)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ └─base::withCallingHandlers(...)
    5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    6. └─fMRIscrub::pscrub(...)
    7.   └─fMRIscrub:::pscrub_multi(...)
    8.     ├─base::with(set.seed(seed), fastICA::fastICA(t(X), maxK_ICA, method = "C"))
    9.     ├─base::with.default(...)
   10.     │ └─base::eval(substitute(expr), data, enclos = parent.frame())
   11.     │   └─base::eval(substitute(expr), data, enclos = parent.frame())
   12.     └─fastICA::fastICA(t(X), maxK_ICA, method = "C")
  ── Error ('test-test_scrubbing.R:34:3'): pscrub works ──────────────────────────
  Error in `fastICA::fastICA(t(X), maxK_ICA, method = "C")`: BLAS/LAPACK routine 'DGESDD' gave error code -5
  Backtrace:
       ▆
    1. ├─testthat::expect_warning(...) at test-test_scrubbing.R:34:2
    2. │ └─testthat:::quasi_capture(...)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ └─base::withCallingHandlers(...)
    5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    6. └─fMRIscrub::pscrub(...)
    7.   └─fMRIscrub:::pscrub_multi(...)
    8.     ├─base::with(set.seed(seed), fastICA::fastICA(t(X), maxK_ICA, method = "C"))
    9.     ├─base::with.default(...)
   10.     │ └─base::eval(substitute(expr), data, enclos = parent.frame())
   11.     │   └─base::eval(substitute(expr), data, enclos = parent.frame())
   12.     └─fastICA::fastICA(t(X), maxK_ICA, method = "C")
  
  [ FAIL 2 | WARN 0 | SKIP 2 | PASS 9 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR