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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(eyeris)

eyeris v3.0.1 - Lumpy Space Princess ꒰•ᴗ•｡꒱۶
Welcome! Type ?`eyeris` to get started.

> 
> test_check("eyeris")
i [2025-10-07 07:12:53] [INFO] Created output directory:
D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL/test_chunked_output
v [2025-10-07 07:12:53] [OKAY] Connected to eyeris database:
D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL/bids_test/derivatives/test-db.eyerisdb
i [2025-10-07 07:12:53] [INFO] Exporting data types: confounds_summary
i [2025-10-07 07:12:53] [INFO] Processing data type: confounds_summary
i [2025-10-07 07:12:53] [INFO] Grouping tables by epoch label...
i [2025-10-07 07:12:53] [INFO] Found 1 epoch label groups for
confounds_summary: _nolabel
i [2025-10-07 07:12:53] [INFO] Analyzing column structures within epoch group
'_nolabel'...
i [2025-10-07 07:12:53] [INFO] Found 2 column-compatible groups within
'_nolabel': goal, stim
i [2025-10-07 07:12:53] [INFO] Processing confounds_summary group 'goal' (2
tables)
i [2025-10-07 07:12:53] [INFO] Using chunked processing (file size limit = 50MB
< 500MB threshold)
i [2025-10-07 07:12:53] [INFO] Processing with file size chunking enabled
i [2025-10-07 07:12:53] [INFO] Starting chunked query processing (chunk size:
50)
i [2025-10-07 07:12:53] [INFO] Query: SELECT * FROM
"confounds_summary_01_task_run01_goal" UNION ALL SELECT * FROM
"confounds_summary_02_task_run01_goal"
i [2025-10-07 07:12:53] [INFO] Processing chunk 1: 50 rows
i [2025-10-07 07:12:53] [INFO] Created output file:
test-db_confounds_summary_goal_chunked_01.csv
i [2025-10-07 07:12:53] [INFO] Processing chunk 2: 50 rows
i [2025-10-07 07:12:53] [INFO] Processing chunk 3: 50 rows
i [2025-10-07 07:12:53] [INFO] No more data to process
v [2025-10-07 07:12:53] [OKAY] Chunked processing complete:
i [2025-10-07 07:12:53] [INFO] Total rows: 150
i [2025-10-07 07:12:53] [INFO] Chunks: 3
i [2025-10-07 07:12:53] [INFO] Processing time: 0 seconds
i [2025-10-07 07:12:53] [INFO] Average rate: 7514 rows/second
i [2025-10-07 07:12:53] [INFO] Processing confounds_summary group 'stim' (1
tables)
i [2025-10-07 07:12:53] [INFO] Using chunked processing (file size limit = 50MB
< 500MB threshold)
i [2025-10-07 07:12:53] [INFO] Processing with file size chunking enabled
i [2025-10-07 07:12:53] [INFO] Starting chunked query processing (chunk size:
50)
i [2025-10-07 07:12:53] [INFO] Query: SELECT * FROM
"confounds_summary_01_task_run01_stim"
i [2025-10-07 07:12:53] [INFO] Processing chunk 1: 50 rows
i [2025-10-07 07:12:53] [INFO] Created output file:
test-db_confounds_summary_stim_chunked_01.csv
i [2025-10-07 07:12:53] [INFO] Processing chunk 2: 50 rows
i [2025-10-07 07:12:53] [INFO] No more data to process
v [2025-10-07 07:12:53] [OKAY] Chunked processing complete:
i [2025-10-07 07:12:53] [INFO] Total rows: 100
i [2025-10-07 07:12:53] [INFO] Chunks: 2
i [2025-10-07 07:12:53] [INFO] Processing time: 0 seconds
i [2025-10-07 07:12:53] [INFO] Average rate: 9011 rows/second
v [2025-10-07 07:12:53] [OKAY] Export complete!
i [2025-10-07 07:12:53] [INFO] Data types exported: 2
i [2025-10-07 07:12:53] [INFO] Total rows exported: 250
i [2025-10-07 07:12:53] [INFO] Output directory:
D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL/test_chunked_output
i [2025-10-07 07:12:53] [INFO] Disconnected from eyeris database
i [2025-10-07 07:12:54] [INFO] Created output directory:
D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL/size_test_output
v [2025-10-07 07:12:54] [OKAY] Connected to eyeris database:
D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL/bids_size_test/derivatives/size-test.eyerisdb
i [2025-10-07 07:12:54] [INFO] Exporting data types: timeseries
i [2025-10-07 07:12:54] [INFO] Processing data type: timeseries
i [2025-10-07 07:12:54] [INFO] Processing timeseries group 'all' (1 tables)
i [2025-10-07 07:12:54] [INFO] Using chunked processing (file size limit =
0.05MB < 500MB threshold)
i [2025-10-07 07:12:54] [INFO] Processing with file size chunking enabled
i [2025-10-07 07:12:54] [INFO] Starting chunked query processing (chunk size:
500)
i [2025-10-07 07:12:54] [INFO] Query: SELECT * FROM "timeseries_01_test_run01"
i [2025-10-07 07:12:54] [INFO] Processing chunk 1: 500 rows
i [2025-10-07 07:12:54] [INFO] Created output file:
size-test_timeseries_chunked_01.csv
i [2025-10-07 07:12:54] [INFO] Processing chunk 2: 500 rows
i [2025-10-07 07:12:54] [INFO] Starting new file due to size limit:
size-test_timeseries_chunked_02.csv
i [2025-10-07 07:12:54] [INFO] Created output file:
size-test_timeseries_chunked_02.csv
i [2025-10-07 07:12:54] [INFO] Processing chunk 3: 500 rows
i [2025-10-07 07:12:54] [INFO] Starting new file due to size limit:
size-test_timeseries_chunked_03.csv
i [2025-10-07 07:12:54] [INFO] Created output file:
size-test_timeseries_chunked_03.csv
i [2025-10-07 07:12:54] [INFO] Processing chunk 4: 500 rows
i [2025-10-07 07:12:54] [INFO] Starting new file due to size limit:
size-test_timeseries_chunked_04.csv
i [2025-10-07 07:12:54] [INFO] Created output file:
size-test_timeseries_chunked_04.csv
i [2025-10-07 07:12:54] [INFO] No more data to process
v [2025-10-07 07:12:54] [OKAY] Chunked processing complete:
i [2025-10-07 07:12:54] [INFO] Total rows: 2000
i [2025-10-07 07:12:54] [INFO] Chunks: 4
i [2025-10-07 07:12:54] [INFO] Processing time: 0.1 seconds
i [2025-10-07 07:12:54] [INFO] Average rate: 15130 rows/second
i [2025-10-07 07:12:54] [INFO] Finalizing 4 output files with proper
numbering...
i [2025-10-07 07:12:54] [INFO] Renamed: size-test_timeseries_chunked_01.csv ->
size-test_timeseries_chunked_01-of-04.csv
i [2025-10-07 07:12:54] [INFO] Renamed: size-test_timeseries_chunked_02.csv ->
size-test_timeseries_chunked_02-of-04.csv
i [2025-10-07 07:12:54] [INFO] Renamed: size-test_timeseries_chunked_03.csv ->
size-test_timeseries_chunked_03-of-04.csv
i [2025-10-07 07:12:54] [INFO] Renamed: size-test_timeseries_chunked_04.csv ->
size-test_timeseries_chunked_04-of-04.csv
v [2025-10-07 07:12:54] [OKAY] Export complete!
i [2025-10-07 07:12:54] [INFO] Data types exported: 1
i [2025-10-07 07:12:54] [INFO] Total rows exported: 2000
i [2025-10-07 07:12:54] [INFO] Output directory:
D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL/size_test_output
i [2025-10-07 07:12:54] [INFO] Disconnected from eyeris database
v [2025-10-07 07:12:55] [OKAY] Connected to eyeris database:
D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL/test_bids/derivatives/user-test.eyerisdb
i [2025-10-07 07:12:55] [INFO] Executing query: SELECT * FROM (SELECT * FROM
"epochs_002_02_memory_run01") as combined_data WHERE 1=1 AND subject_id = '002'
i [2025-10-07 07:12:55] [INFO] Executing query: SELECT * FROM (SELECT * FROM
"epochs_002_02_memory_run01") as combined_data WHERE 1=1 AND subject_id = '002'
AND session_id = '02' AND task_name = 'memory'
i [2025-10-07 07:12:55] [INFO] Disconnected from eyeris database
i [2025-10-07 07:12:57] [INFO] Executing query: SELECT * FROM (SELECT * FROM
"epoch_timeseries_005_01_epochtest_run01_prepostprobe") as combined_data WHERE
1=1 AND subject_id = '005'
v [2025-10-07 07:12:58] [OKAY] Running eyeris::load_asc()
i [2025-10-07 07:12:58] [INFO] Processing block: block_1
v [2025-10-07 07:12:58] [OKAY] Running eyeris::deblink() for block_1
v [2025-10-07 07:12:58] [OKAY] Running eyeris::detransient() for block_1
v [2025-10-07 07:12:58] [OKAY] Running eyeris::interpolate() for block_1
v [2025-10-07 07:12:58] [OKAY] Running eyeris::lpfilt() for block_1
! [2025-10-07 07:12:58] [WARN] Skipping eyeris::downsample() for block_1
! [2025-10-07 07:12:58] [WARN] Skipping eyeris::bin() for block_1
! [2025-10-07 07:12:58] [WARN] Skipping eyeris::detrend() for block_1
v [2025-10-07 07:12:58] [OKAY] Running eyeris::zscore() for block_1
i [2025-10-07 07:12:58] [INFO] Block processing summary:
i [2025-10-07 07:12:58] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2025-10-07 07:12:58] [OKAY] Running eyeris::summarize_confounds()
i [2025-10-07 07:13:00] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:01] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:02] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:02] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:03] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:04] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:05] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:05] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:08] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:09] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:09] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:10] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:11] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:11] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:12] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
! [2025-10-07 07:13:16] [WARN] No detrend data found for run-01


processing file: sub-001.Rmd
output file: sub-001.knit.md

"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-001.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-001.html --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANincoming/R-devel/lib/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL\rmarkdown-str124982bed3bbe.html" 
[WARNING] Could not fetch resource 

Output created: sub-001.html
v [2025-10-07 07:13:20] [OKAY] Running eyeris::load_asc()
i [2025-10-07 07:13:20] [INFO] Processing block: block_1
v [2025-10-07 07:13:20] [OKAY] Running eyeris::deblink() for block_1
v [2025-10-07 07:13:20] [OKAY] Running eyeris::detransient() for block_1
v [2025-10-07 07:13:21] [OKAY] Running eyeris::interpolate() for block_1
v [2025-10-07 07:13:21] [OKAY] Running eyeris::lpfilt() for block_1
! [2025-10-07 07:13:21] [WARN] Skipping eyeris::downsample() for block_1
! [2025-10-07 07:13:21] [WARN] Skipping eyeris::bin() for block_1
! [2025-10-07 07:13:21] [WARN] Skipping eyeris::detrend() for block_1
v [2025-10-07 07:13:21] [OKAY] Running eyeris::zscore() for block_1
i [2025-10-07 07:13:21] [INFO] Block processing summary:
i [2025-10-07 07:13:21] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2025-10-07 07:13:21] [OKAY] Running eyeris::summarize_confounds()
i [2025-10-07 07:13:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:24] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:25] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:25] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:26] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:27] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:27] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:28] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:28] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:29] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:29] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:30] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:30] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:31] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:32] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:32] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:33] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
! [2025-10-07 07:13:37] [WARN] No detrend data found for run-01


processing file: sub-002.Rmd
output file: sub-002.knit.md

"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-002.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-002.html --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANincoming/R-devel/lib/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL\rmarkdown-str12498363426c.html" 
[WARNING] Could not fetch resource 

Output created: sub-002.html
v [2025-10-07 07:13:41] [OKAY] Running eyeris::load_asc()
i [2025-10-07 07:13:41] [INFO] Processing block: block_1
v [2025-10-07 07:13:41] [OKAY] Running eyeris::deblink() for block_1
v [2025-10-07 07:13:41] [OKAY] Running eyeris::detransient() for block_1
v [2025-10-07 07:13:41] [OKAY] Running eyeris::interpolate() for block_1
v [2025-10-07 07:13:41] [OKAY] Running eyeris::lpfilt() for block_1
! [2025-10-07 07:13:41] [WARN] Skipping eyeris::downsample() for block_1
! [2025-10-07 07:13:41] [WARN] Skipping eyeris::bin() for block_1
! [2025-10-07 07:13:41] [WARN] Skipping eyeris::detrend() for block_1
v [2025-10-07 07:13:41] [OKAY] Running eyeris::zscore() for block_1
i [2025-10-07 07:13:41] [INFO] Block processing summary:
i [2025-10-07 07:13:41] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2025-10-07 07:13:41] [OKAY] Running eyeris::summarize_confounds()
i [2025-10-07 07:13:43] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:44] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:45] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:45] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:46] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:47] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:48] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:48] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:49] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:50] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:50] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:51] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:51] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:52] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:52] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:53] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:54] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:13:54] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
! [2025-10-07 07:13:58] [WARN] No detrend data found for run-01


processing file: sub-003.Rmd
output file: sub-003.knit.md

"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-003.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-003.html --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANincoming/R-devel/lib/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL\rmarkdown-str1249868e227ca.html" 
[WARNING] Could not fetch resource 

Output created: sub-003.html
v [2025-10-07 07:14:01] [OKAY] Running eyeris::load_asc()
i [2025-10-07 07:14:01] [INFO] Processing block: block_1
v [2025-10-07 07:14:01] [OKAY] Running eyeris::deblink() for block_1
v [2025-10-07 07:14:01] [OKAY] Running eyeris::detransient() for block_1
v [2025-10-07 07:14:01] [OKAY] Running eyeris::interpolate() for block_1
v [2025-10-07 07:14:01] [OKAY] Running eyeris::lpfilt() for block_1
! [2025-10-07 07:14:02] [WARN] Skipping eyeris::downsample() for block_1
! [2025-10-07 07:14:02] [WARN] Skipping eyeris::bin() for block_1
! [2025-10-07 07:14:02] [WARN] Skipping eyeris::detrend() for block_1
v [2025-10-07 07:14:02] [OKAY] Running eyeris::zscore() for block_1
i [2025-10-07 07:14:02] [INFO] Block processing summary:
i [2025-10-07 07:14:02] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2025-10-07 07:14:02] [OKAY] Running eyeris::summarize_confounds()
i [2025-10-07 07:14:04] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:05] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:08] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:08] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:09] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:09] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:10] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:10] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:11] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:11] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:12] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:13] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:14] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:14] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
i [2025-10-07 07:14:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from
possible blocks: 1
! [2025-10-07 07:14:18] [WARN] No detrend data found for run-01


processing file: sub-004.Rmd
output file: sub-004.knit.md

"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-004.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-004.html --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANincoming/R-devel/lib/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL\rmarkdown-str12498559244f0.html" 
[WARNING] Could not fetch resource 

Output created: sub-004.html
i [2025-10-07 07:14:23] [INFO] Disconnected from eyeris database
v [2025-10-07 07:14:23] [OKAY] Connected to eyeris database:
D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL/test_bids/derivatives/test-study.eyerisdb
i [2025-10-07 07:14:23] [INFO] Disconnected from eyeris database
i [2025-10-07 07:14:23] [INFO] Disconnected from eyeris database
v [2025-10-07 07:14:23] [OKAY] Connected to eyeris database:
D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL/test_bids_read/derivatives/read-test.eyerisdb
i [2025-10-07 07:14:23] [INFO] Disconnected from eyeris database
i [2025-10-07 07:14:24] [INFO] Disconnected from eyeris database
v [2025-10-07 07:14:24] [OKAY] Connected to eyeris database:
D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL/test_bids_size/derivatives/size-test.eyerisdb
i [2025-10-07 07:14:24] [INFO] Disconnected from eyeris database
i [2025-10-07 07:14:24] [INFO] Disconnected from eyeris database
v [2025-10-07 07:14:24] [OKAY] Connected to eyeris database:
D:\temp\2025_10_07_07_10_16_25169\Rtmp8MOJKL/test_bids_empty/derivatives/empty-test.eyerisdb
! [2025-10-07 07:14:24] [WARN] No valid tables found in database (after
excluding temp tables)
i [2025-10-07 07:14:24] [INFO] Disconnected from eyeris database
v [2025-10-07 07:14:25] [OKAY] Running eyeris::load_asc()
i [2025-10-07 07:14:25] [INFO] Processing block: block_1
v [2025-10-07 07:14:25] [OKAY] Running eyeris::deblink() for block_1
v [2025-10-07 07:14:25] [OKAY] Running eyeris::detransient() for block_1
v [2025-10-07 07:14:25] [OKAY] Running eyeris::interpolate() for block_1
v [2025-10-07 07:14:25] [OKAY] Running eyeris::lpfilt() for block_1
! [2025-10-07 07:14:25] [WARN] Skipping eyeris::downsample() for block_1
! [2025-10-07 07:14:25] [WARN] Skipping eyeris::bin() for block_1
! [2025-10-07 07:14:25] [WARN] Skipping eyeris::detrend() for block_1
v [2025-10-07 07:14:25] [OKAY] Running eyeris::zscore() for block_1
i [2025-10-07 07:14:25] [INFO] Block processing summary:
i [2025-10-07 07:14:25] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2025-10-07 07:14:25] [OKAY] Running eyeris::summarize_confounds()
v [2025-10-07 07:14:26] [OKAY] Running eyeris::load_asc()
i [2025-10-07 07:14:26] [INFO] Binocular data detected. Processing average
mode.
i [2025-10-07 07:14:26] [INFO] Processing block: block_1
v [2025-10-07 07:14:26] [OKAY] Running eyeris::deblink() for block_1
v [2025-10-07 07:14:26] [OKAY] Running eyeris::detransient() for block_1
v [2025-10-07 07:14:26] [OKAY] Running eyeris::interpolate() for block_1
! [2025-10-07 07:14:26] [WARN] No NAs detected in pupil data... Skipping
interpolation!
v [2025-10-07 07:14:26] [OKAY] Running eyeris::lpfilt() for block_1
! [2025-10-07 07:14:26] [WARN] Skipping eyeris::downsample() for block_1
! [2025-10-07 07:14:26] [WARN] Skipping eyeris::bin() for block_1
! [2025-10-07 07:14:26] [WARN] Skipping eyeris::detrend() for block_1
v [2025-10-07 07:14:26] [OKAY] Running eyeris::zscore() for block_1
i [2025-10-07 07:14:26] [INFO] Block processing summary:
i [2025-10-07 07:14:26] [INFO] block_1: OK (steps: 6, latest:
pupil_raw_deblink_detransient_interpolate_lpfilt_z)
v [2025-10-07 07:14:26] [OKAY] Running eyeris::summarize_confounds()
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 192 ]
> 
> proc.time()
   user  system elapsed 
  49.73   38.37   99.25