Package: eyeris Check: tests New result: ERROR Running ‘testthat.R’ [38s/43s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(eyeris) eyeris v3.0.1 - Lumpy Space Princess ꒰•ᴗ•｡꒱۶ Welcome! Type ?`eyeris` to get started. > > test_check("eyeris") Saving _problems/test-chunked-processing-200.R i [2026-02-23 00:17:01] [INFO] Created output directory: /home/hornik/tmp/scratch/RtmpLINABe/test_chunked_output v [2026-02-23 00:17:01] [OKAY] Connected to eyeris database: /home/hornik/tmp/scratch/RtmpLINABe/bids_test/derivatives/test-db.eyerisdb i [2026-02-23 00:17:01] [INFO] Exporting data types: confounds_summary i [2026-02-23 00:17:01] [INFO] Processing data type: confounds_summary i [2026-02-23 00:17:01] [INFO] Grouping tables by epoch label... i [2026-02-23 00:17:01] [INFO] Found 1 epoch label groups for confounds_summary: _nolabel i [2026-02-23 00:17:01] [INFO] Analyzing column structures within epoch group '_nolabel'... i [2026-02-23 00:17:01] [INFO] Found 2 column-compatible groups within '_nolabel': goal, stim i [2026-02-23 00:17:01] [INFO] Processing confounds_summary group 'goal' (2 tables) i [2026-02-23 00:17:01] [INFO] Using chunked processing (file size limit = 50MB < 500MB threshold) i [2026-02-23 00:17:01] [INFO] Processing with file size chunking enabled i [2026-02-23 00:17:01] [INFO] Starting chunked query processing (chunk size: 50) i [2026-02-23 00:17:01] [INFO] Query: SELECT * FROM "confounds_summary_01_task_run01_goal" UNION ALL SELECT * FROM "confounds_summary_02_task_run01_goal" i [2026-02-23 00:17:01] [INFO] Processing chunk 1: 50 rows i [2026-02-23 00:17:01] [INFO] Created output file: test-db_confounds_summary_goal_chunked_01.csv i [2026-02-23 00:17:01] [INFO] Processing chunk 2: 50 rows i [2026-02-23 00:17:01] [INFO] Processing chunk 3: 50 rows i [2026-02-23 00:17:01] [INFO] No more data to process v [2026-02-23 00:17:01] [OKAY] Chunked processing complete: i [2026-02-23 00:17:01] [INFO] Total rows: 150 i [2026-02-23 00:17:01] [INFO] Chunks: 3 i [2026-02-23 00:17:01] [INFO] Processing time: 0 seconds i [2026-02-23 00:17:01] [INFO] Average rate: 9983 rows/second i [2026-02-23 00:17:01] [INFO] Processing confounds_summary group 'stim' (1 tables) i [2026-02-23 00:17:01] [INFO] Using chunked processing (file size limit = 50MB < 500MB threshold) i [2026-02-23 00:17:01] [INFO] Processing with file size chunking enabled i [2026-02-23 00:17:01] [INFO] Starting chunked query processing (chunk size: 50) i [2026-02-23 00:17:01] [INFO] Query: SELECT * FROM "confounds_summary_01_task_run01_stim" i [2026-02-23 00:17:01] [INFO] Processing chunk 1: 50 rows i [2026-02-23 00:17:01] [INFO] Created output file: test-db_confounds_summary_stim_chunked_01.csv i [2026-02-23 00:17:01] [INFO] Processing chunk 2: 50 rows i [2026-02-23 00:17:01] [INFO] No more data to process v [2026-02-23 00:17:01] [OKAY] Chunked processing complete: i [2026-02-23 00:17:01] [INFO] Total rows: 100 i [2026-02-23 00:17:01] [INFO] Chunks: 2 i [2026-02-23 00:17:01] [INFO] Processing time: 0 seconds i [2026-02-23 00:17:01] [INFO] Average rate: 8554 rows/second v [2026-02-23 00:17:01] [OKAY] Export complete! i [2026-02-23 00:17:01] [INFO] Data types exported: 2 i [2026-02-23 00:17:01] [INFO] Total rows exported: 250 i [2026-02-23 00:17:01] [INFO] Output directory: /home/hornik/tmp/scratch/RtmpLINABe/test_chunked_output i [2026-02-23 00:17:01] [INFO] Disconnected from eyeris database i [2026-02-23 00:17:01] [INFO] Created output directory: /home/hornik/tmp/scratch/RtmpLINABe/size_test_output v [2026-02-23 00:17:01] [OKAY] Connected to eyeris database: /home/hornik/tmp/scratch/RtmpLINABe/bids_size_test/derivatives/size-test.eyerisdb i [2026-02-23 00:17:01] [INFO] Exporting data types: timeseries i [2026-02-23 00:17:01] [INFO] Processing data type: timeseries i [2026-02-23 00:17:01] [INFO] Processing timeseries group 'all' (1 tables) i [2026-02-23 00:17:01] [INFO] Using chunked processing (file size limit = 0.05MB < 500MB threshold) i [2026-02-23 00:17:02] [INFO] Processing with file size chunking enabled i [2026-02-23 00:17:02] [INFO] Starting chunked query processing (chunk size: 500) i [2026-02-23 00:17:02] [INFO] Query: SELECT * FROM "timeseries_01_test_run01" i [2026-02-23 00:17:02] [INFO] Processing chunk 1: 500 rows i [2026-02-23 00:17:02] [INFO] Created output file: size-test_timeseries_chunked_01.csv i [2026-02-23 00:17:02] [INFO] Processing chunk 2: 500 rows i [2026-02-23 00:17:02] [INFO] Starting new file due to size limit: size-test_timeseries_chunked_02.csv i [2026-02-23 00:17:02] [INFO] Created output file: size-test_timeseries_chunked_02.csv i [2026-02-23 00:17:02] [INFO] Processing chunk 3: 500 rows i [2026-02-23 00:17:02] [INFO] Starting new file due to size limit: size-test_timeseries_chunked_03.csv i [2026-02-23 00:17:02] [INFO] Created output file: size-test_timeseries_chunked_03.csv i [2026-02-23 00:17:02] [INFO] Processing chunk 4: 500 rows i [2026-02-23 00:17:02] [INFO] Starting new file due to size limit: size-test_timeseries_chunked_04.csv i [2026-02-23 00:17:02] [INFO] Created output file: size-test_timeseries_chunked_04.csv i [2026-02-23 00:17:02] [INFO] No more data to process v [2026-02-23 00:17:02] [OKAY] Chunked processing complete: i [2026-02-23 00:17:02] [INFO] Total rows: 2000 i [2026-02-23 00:17:02] [INFO] Chunks: 4 i [2026-02-23 00:17:02] [INFO] Processing time: 0 seconds i [2026-02-23 00:17:02] [INFO] Average rate: 49664 rows/second i [2026-02-23 00:17:02] [INFO] Finalizing 4 output files with proper numbering... i [2026-02-23 00:17:02] [INFO] Renamed: size-test_timeseries_chunked_01.csv -> size-test_timeseries_chunked_01-of-04.csv i [2026-02-23 00:17:02] [INFO] Renamed: size-test_timeseries_chunked_02.csv -> size-test_timeseries_chunked_02-of-04.csv i [2026-02-23 00:17:02] [INFO] Renamed: size-test_timeseries_chunked_03.csv -> size-test_timeseries_chunked_03-of-04.csv i [2026-02-23 00:17:02] [INFO] Renamed: size-test_timeseries_chunked_04.csv -> size-test_timeseries_chunked_04-of-04.csv v [2026-02-23 00:17:02] [OKAY] Export complete! i [2026-02-23 00:17:02] [INFO] Data types exported: 1 i [2026-02-23 00:17:02] [INFO] Total rows exported: 2000 i [2026-02-23 00:17:02] [INFO] Output directory: /home/hornik/tmp/scratch/RtmpLINABe/size_test_output i [2026-02-23 00:17:02] [INFO] Disconnected from eyeris database v [2026-02-23 00:17:02] [OKAY] Connected to eyeris database: /home/hornik/tmp/scratch/RtmpLINABe/test_bids/derivatives/user-test.eyerisdb i [2026-02-23 00:17:02] [INFO] Executing query: SELECT * FROM (SELECT * FROM "epochs_002_02_memory_run01") as combined_data WHERE 1=1 AND subject_id = '002' i [2026-02-23 00:17:02] [INFO] Executing query: SELECT * FROM (SELECT * FROM "epochs_002_02_memory_run01") as combined_data WHERE 1=1 AND subject_id = '002' AND session_id = '02' AND task_name = 'memory' i [2026-02-23 00:17:02] [INFO] Disconnected from eyeris database i [2026-02-23 00:17:03] [INFO] Executing query: SELECT * FROM (SELECT * FROM "epoch_timeseries_005_01_epochtest_run01_prepostprobe") as combined_data WHERE 1=1 AND subject_id = '005' v [2026-02-23 00:17:04] [OKAY] Running eyeris::load_asc() i [2026-02-23 00:17:04] [INFO] Processing block: block_1 v [2026-02-23 00:17:04] [OKAY] Running eyeris::deblink() for block_1 v [2026-02-23 00:17:04] [OKAY] Running eyeris::detransient() for block_1 v [2026-02-23 00:17:04] [OKAY] Running eyeris::interpolate() for block_1 v [2026-02-23 00:17:04] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-02-23 00:17:04] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-02-23 00:17:04] [WARN] Skipping eyeris::bin() for block_1 ! [2026-02-23 00:17:04] [WARN] Skipping eyeris::detrend() for block_1 v [2026-02-23 00:17:04] [OKAY] Running eyeris::zscore() for block_1 i [2026-02-23 00:17:04] [INFO] Block processing summary: i [2026-02-23 00:17:04] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-02-23 00:17:04] [OKAY] Running eyeris::summarize_confounds() i [2026-02-23 00:17:05] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:05] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:05] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:05] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 ! [2026-02-23 00:17:10] [WARN] No detrend data found for run-01 processing file: sub-001.Rmd output file: sub-001.knit.md /usr/bin/pandoc +RTS -K512m -RTS sub-001.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-001.html --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --css /home/hornik/tmp/CRAN_recheck/eyeris.Rcheck/eyeris/rmarkdown/css/report.css --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /home/hornik/tmp/scratch/RtmpLINABe/rmarkdown-str3d094c35adbe66.html [WARNING] Could not fetch resource Output created: sub-001.html v [2026-02-23 00:17:14] [OKAY] Running eyeris::load_asc() i [2026-02-23 00:17:14] [INFO] Processing block: block_1 v [2026-02-23 00:17:14] [OKAY] Running eyeris::deblink() for block_1 v [2026-02-23 00:17:14] [OKAY] Running eyeris::detransient() for block_1 v [2026-02-23 00:17:14] [OKAY] Running eyeris::interpolate() for block_1 v [2026-02-23 00:17:14] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-02-23 00:17:14] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-02-23 00:17:14] [WARN] Skipping eyeris::bin() for block_1 ! [2026-02-23 00:17:14] [WARN] Skipping eyeris::detrend() for block_1 v [2026-02-23 00:17:14] [OKAY] Running eyeris::zscore() for block_1 i [2026-02-23 00:17:14] [INFO] Block processing summary: i [2026-02-23 00:17:14] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-02-23 00:17:14] [OKAY] Running eyeris::summarize_confounds() i [2026-02-23 00:17:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:17] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:17] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:17] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:17] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 ! [2026-02-23 00:17:19] [WARN] No detrend data found for run-01 processing file: sub-002.Rmd output file: sub-002.knit.md /usr/bin/pandoc +RTS -K512m -RTS sub-002.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-002.html --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --css /home/hornik/tmp/CRAN_recheck/eyeris.Rcheck/eyeris/rmarkdown/css/report.css --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /home/hornik/tmp/scratch/RtmpLINABe/rmarkdown-str3d094c379121a9.html [WARNING] Could not fetch resource Output created: sub-002.html v [2026-02-23 00:17:21] [OKAY] Running eyeris::load_asc() i [2026-02-23 00:17:21] [INFO] Processing block: block_1 v [2026-02-23 00:17:21] [OKAY] Running eyeris::deblink() for block_1 v [2026-02-23 00:17:21] [OKAY] Running eyeris::detransient() for block_1 v [2026-02-23 00:17:21] [OKAY] Running eyeris::interpolate() for block_1 v [2026-02-23 00:17:21] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-02-23 00:17:22] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-02-23 00:17:22] [WARN] Skipping eyeris::bin() for block_1 ! [2026-02-23 00:17:22] [WARN] Skipping eyeris::detrend() for block_1 v [2026-02-23 00:17:22] [OKAY] Running eyeris::zscore() for block_1 i [2026-02-23 00:17:22] [INFO] Block processing summary: i [2026-02-23 00:17:22] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-02-23 00:17:22] [OKAY] Running eyeris::summarize_confounds() i [2026-02-23 00:17:22] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:22] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:24] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:24] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:24] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:24] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:24] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:24] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:24] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:24] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:25] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:25] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 ! [2026-02-23 00:17:27] [WARN] No detrend data found for run-01 processing file: sub-003.Rmd output file: sub-003.knit.md /usr/bin/pandoc +RTS -K512m -RTS sub-003.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-003.html --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --css /home/hornik/tmp/CRAN_recheck/eyeris.Rcheck/eyeris/rmarkdown/css/report.css --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /home/hornik/tmp/scratch/RtmpLINABe/rmarkdown-str3d094c74ba84ef.html [WARNING] Could not fetch resource Output created: sub-003.html v [2026-02-23 00:17:29] [OKAY] Running eyeris::load_asc() i [2026-02-23 00:17:29] [INFO] Processing block: block_1 v [2026-02-23 00:17:29] [OKAY] Running eyeris::deblink() for block_1 v [2026-02-23 00:17:29] [OKAY] Running eyeris::detransient() for block_1 v [2026-02-23 00:17:29] [OKAY] Running eyeris::interpolate() for block_1 v [2026-02-23 00:17:29] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-02-23 00:17:29] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-02-23 00:17:29] [WARN] Skipping eyeris::bin() for block_1 ! [2026-02-23 00:17:29] [WARN] Skipping eyeris::detrend() for block_1 v [2026-02-23 00:17:29] [OKAY] Running eyeris::zscore() for block_1 i [2026-02-23 00:17:29] [INFO] Block processing summary: i [2026-02-23 00:17:29] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-02-23 00:17:29] [OKAY] Running eyeris::summarize_confounds() i [2026-02-23 00:17:30] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:30] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:30] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:30] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:31] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:31] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:31] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:31] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:31] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:31] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:31] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:32] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:32] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:32] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:32] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:32] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:32] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2026-02-23 00:17:32] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 ! [2026-02-23 00:17:35] [WARN] No detrend data found for run-01 processing file: sub-004.Rmd output file: sub-004.knit.md /usr/bin/pandoc +RTS -K512m -RTS sub-004.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-004.html --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rmarkdown/rmd/h/default.html --syntax-highlighting=none --variable highlightjs=1 --variable theme=bootstrap --css /home/hornik/tmp/CRAN_recheck/eyeris.Rcheck/eyeris/rmarkdown/css/report.css --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /home/hornik/tmp/scratch/RtmpLINABe/rmarkdown-str3d094c4f1d0e33.html [WARNING] Could not fetch resource Output created: sub-004.html i [2026-02-23 00:17:38] [INFO] Disconnected from eyeris database v [2026-02-23 00:17:38] [OKAY] Connected to eyeris database: /home/hornik/tmp/scratch/RtmpLINABe/test_bids/derivatives/test-study.eyerisdb i [2026-02-23 00:17:38] [INFO] Disconnected from eyeris database Saving _problems/test-parquet-split-57.R Saving _problems/test-parquet-split-79.R Saving _problems/test-parquet-split-79.R i [2026-02-23 00:17:39] [INFO] Disconnected from eyeris database v [2026-02-23 00:17:39] [OKAY] Connected to eyeris database: /home/hornik/tmp/scratch/RtmpLINABe/test_bids_read/derivatives/read-test.eyerisdb i [2026-02-23 00:17:39] [INFO] Disconnected from eyeris database Saving _problems/test-parquet-split-134.R Saving _problems/test-parquet-split-143.R Saving _problems/test-parquet-split-147.R Saving _problems/test-parquet-split-150.R Saving _problems/test-parquet-split-151.R i [2026-02-23 00:17:39] [INFO] Disconnected from eyeris database v [2026-02-23 00:17:39] [OKAY] Connected to eyeris database: /home/hornik/tmp/scratch/RtmpLINABe/test_bids_size/derivatives/size-test.eyerisdb i [2026-02-23 00:17:39] [INFO] Disconnected from eyeris database Saving _problems/test-parquet-split-206.R Saving _problems/test-parquet-split-207.R i [2026-02-23 00:17:39] [INFO] Disconnected from eyeris database v [2026-02-23 00:17:39] [OKAY] Connected to eyeris database: /home/hornik/tmp/scratch/RtmpLINABe/test_bids_empty/derivatives/empty-test.eyerisdb ! [2026-02-23 00:17:39] [WARN] No valid tables found in database (after excluding temp tables) i [2026-02-23 00:17:39] [INFO] Disconnected from eyeris database Saving _problems/test-parquet-split-272.R v [2026-02-23 00:17:39] [OKAY] Running eyeris::load_asc() i [2026-02-23 00:17:39] [INFO] Processing block: block_1 v [2026-02-23 00:17:40] [OKAY] Running eyeris::deblink() for block_1 v [2026-02-23 00:17:40] [OKAY] Running eyeris::detransient() for block_1 v [2026-02-23 00:17:40] [OKAY] Running eyeris::interpolate() for block_1 v [2026-02-23 00:17:40] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-02-23 00:17:40] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-02-23 00:17:40] [WARN] Skipping eyeris::bin() for block_1 ! [2026-02-23 00:17:40] [WARN] Skipping eyeris::detrend() for block_1 v [2026-02-23 00:17:40] [OKAY] Running eyeris::zscore() for block_1 i [2026-02-23 00:17:40] [INFO] Block processing summary: i [2026-02-23 00:17:40] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-02-23 00:17:40] [OKAY] Running eyeris::summarize_confounds() v [2026-02-23 00:17:40] [OKAY] Running eyeris::load_asc() i [2026-02-23 00:17:40] [INFO] Binocular data detected. Processing average mode. i [2026-02-23 00:17:40] [INFO] Processing block: block_1 v [2026-02-23 00:17:40] [OKAY] Running eyeris::deblink() for block_1 v [2026-02-23 00:17:40] [OKAY] Running eyeris::detransient() for block_1 v [2026-02-23 00:17:40] [OKAY] Running eyeris::interpolate() for block_1 ! [2026-02-23 00:17:40] [WARN] No NAs detected in pupil data... Skipping interpolation! v [2026-02-23 00:17:40] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-02-23 00:17:40] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-02-23 00:17:40] [WARN] Skipping eyeris::bin() for block_1 ! [2026-02-23 00:17:40] [WARN] Skipping eyeris::detrend() for block_1 v [2026-02-23 00:17:40] [OKAY] Running eyeris::zscore() for block_1 i [2026-02-23 00:17:40] [INFO] Block processing summary: i [2026-02-23 00:17:40] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-02-23 00:17:40] [OKAY] Running eyeris::summarize_confounds() [ FAIL 12 | WARN 0 | SKIP 0 | PASS 173 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-chunked-processing.R:200:5'): chunked processing works with parquet output ── Error in `parquet___arrow___ArrowReaderProperties__Make(isTRUE(use_threads))`: Cannot call parquet___arrow___ArrowReaderProperties__Make(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries. Backtrace: ▆ 1. └─arrow::read_parquet(parquet_file) at test-chunked-processing.R:200:5 2. ├─ParquetFileReader$create(file, props = props, mmap = mmap, ...) 3. │ └─arrow:::assert_is(props, "ParquetArrowReaderProperties") 4. │ ├─assertthat::assert_that(inherits(object, class), msg = msg) 5. │ │ └─assertthat::see_if(..., env = env, msg = msg) 6. │ │ ├─base::tryCatch(...) 7. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 10. │ │ └─base::eval(assertion, env) 11. │ │ └─base::eval(assertion, env) 12. │ └─base::inherits(object, class) 13. └─ParquetArrowReaderProperties$create() 14. └─arrow:::parquet___arrow___ArrowReaderProperties__Make(isTRUE(use_threads)) ── Failure ('test-parquet-split.R:57:3'): eyeris_db_to_parquet creates correctly named files and folders ── Expected `length(result$files)` to equal 2. Differences: `actual`: 0.0 `expected`: 2.0 ── Failure ('test-parquet-split.R:79:5'): eyeris_db_to_parquet creates correctly named files and folders ── Expected `expected_filepath %in% result$files` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-parquet-split.R:79:5'): eyeris_db_to_parquet creates correctly named files and folders ── Expected `expected_filepath %in% result$files` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-parquet-split.R:134:3'): read_eyeris_parquet correctly reads back split data ── Expected `length(split_result$files)` to equal 2. Differences: `actual`: 0.0 `expected`: 2.0 ── Failure ('test-parquet-split.R:143:3'): read_eyeris_parquet correctly reads back split data ── Expected `nrow(read_data)` to equal `nrow(original_data)`. Differences: `actual`: 0 `expected`: 50 ── Failure ('test-parquet-split.R:144:3'): read_eyeris_parquet correctly reads back split data ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-parquet-split.R:150:3'): read_eyeris_parquet correctly reads back split data ── Expected `sort(read_data$time)` to equal `sort(original_data$time)`. Differences: `actual` is NULL `expected` is an integer vector (1, 2, 3, 4, 5, ...) ── Failure ('test-parquet-split.R:151:3'): read_eyeris_parquet correctly reads back split data ── Expected `sort(read_data$pupil_left)` to equal `sort(original_data$pupil_left)`. Differences: `actual` is NULL `expected` is an integer vector (1, 2, 3, 4, 5, ...) ── Failure ('test-parquet-split.R:206:3'): eyeris_db_to_parquet handles file size constraints ── Expected `length(result$files) >= 2` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-parquet-split.R:207:3'): eyeris_db_to_parquet handles file size constraints ── Expected `result$n_files_created >= 2` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Error ('test-parquet-split.R:269:5'): read_eyeris_parquet works with db_name parameter ── Error in `parquet___WriterProperties___Builder__create()`: Cannot call parquet___WriterProperties___Builder__create(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries. Backtrace: ▆ 1. └─arrow::write_parquet(test_data_1, file.path(db_folder, "my-study_timeseries_part-01-of-02.parquet")) at test-parquet-split.R:269:5 2. ├─ParquetFileWriter$create(...) 3. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...) 4. └─ParquetWriterProperties$create(...) 5. └─arrow:::parquet___WriterProperties___Builder__create() [ FAIL 12 | WARN 0 | SKIP 0 | PASS 173 ] Error: ! Test failures. Execution halted