library(testthat) # @@@@@@@@@ # IRIS ---- # @@@@@@@@@ col_names <- c( "chemical_name", "casrn", "exposure_route", "assessment_type", "critical_effect_or_tumor_type", "woe_characterization", "toxicity_value_type", "toxicity_value", "query" ) Sys.sleep(4) test_that("extr_iris_ fetches data for multiple CASRN", { skip_on_cran() skip_if_offline() ids_search <- c("50-00-0", "1332-21-4") expect_message( { out <- extr_iris(ids_search, verbose = TRUE) }, "Quering" ) expect_true(is.data.frame(out)) expect_equal(nrow(out), 4) expect_equal(names(out), col_names) expect_true(all(out$query %in% ids_search)) }) Sys.sleep(4) test_that("extr_iris_ warn and fill with NA wrong CASRN", { skip_on_cran() skip_if_offline() ids_search <- c("50-00-0", "1332-21-4", "bella", "ciao") expect_warning( { out <- extr_iris(ids_search, verbose = TRUE) }, "Chemicals.*found!" ) expect_equal(nrow(out), 6) expect_true(all(out$query %in% ids_search)) expect_equal(sum(is.na(out$casrn)), 2) }) Sys.sleep(4) test_that("extr_iris_ cancer_types and verbose = FALSE work", { skip_on_cran() skip_if_offline() ids_search <- c("50-00-0", "1332-21-4", "bella", "ciao") expect_silent({ out <- extr_iris(ids_search, verbose = FALSE) }) expect_equal(nrow(out), 6) expect_true(all(out$query %in% ids_search)) expect_equal(sum(is.na(out$casrn)), 2) })