* using log directory 'd:/RCompile/CRANincoming/R-devel/extraSuperpower.Rcheck'
* using R Under development (unstable) (2025-06-05 r88281 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'extraSuperpower/DESCRIPTION' ... OK
* this is package 'extraSuperpower' version '0.1.0.001'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Louis Macias <louis.macias@uni-luebeck.de>'

New submission

Version contains leading zeroes (0.1.0.001)

Non-FOSS package license (`use_mit_license()`)

Authors@R field should be a call to person(), or combine such calls.

The Title field should be in title case. Current version is:
  'Inspired by package Superpower, this package calculates power for two-way factorial designs'
In title case that is:
  'Inspired by Package Superpower, this Package Calculates Power for Two-Way Factorial Designs'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'extraSuperpower' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... WARNING
Non-standard license specification:
  `use_mit_license()`
Standardizable: FALSE
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s] NOTE
exact_twoway_anova_power : calcpow: no visible global function
  definition for 'qf'
exact_twoway_anova_power : calcpow: no visible global function
  definition for 'pf'
gencorrelationmat: no visible global function definition for 'is'
genvecs: no visible binding for global variable 'refmean'
genvecs: no visible global function definition for 'is'
graph_twoway_assumptions : plotmeans_sd: no visible binding for global
  variable '.data'
graph_twoway_assumptions : plotmeans_sd: no visible binding for global
  variable 'y'
graph_twoway_assumptions : plotmeans_sd: no visible binding for global
  variable 'sd'
plot_powercurves: no visible binding for global variable 'n'
plot_powercurves: no visible binding for global variable 'power'
plot_powercurves: no visible binding for global variable 'effect'
plot_powercurves: no visible binding for global variable
  'mean.group.size'
plot_powercurves: no visible binding for global variable
  'lower.bound.ci'
plot_powercurves: no visible binding for global variable
  'upper.bound.ci'
summarySE : <anonymous>: no visible global function definition for 'sd'
summarySE: no visible global function definition for 'qt'
twoway_simulation_independent: no visible binding for global variable
  'rnorm'
twoway_simulation_testing: no visible global function definition for
  'as.formula'
twoway_simulation_testing: no visible global function definition for
  'capture.output'
twoway_simulation_testing: no visible global function definition for
  'qnorm'
Undefined global functions or variables:
  .data as.formula capture.output effect is lower.bound.ci
  mean.group.size n pf power qf qnorm qt refmean rnorm sd
  upper.bound.ci y
Consider adding
  importFrom("methods", "is")
  importFrom("stats", "as.formula", "pf", "power", "qf", "qnorm", "qt",
             "rnorm", "sd")
  importFrom("utils", "capture.output")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'calculate_mean_matrix.Rd':
  \examples lines wider than 100 characters:
     effects_treat_time <- calculate_mean_matrix(refmean = refmean, fAeffect = treateff, fBeffect = timeeff, nlfA = treatgroups, nlfB = time ... [TRUNCATED]
     independent_experiment <- twoway_simulation_independent(group_size = n, matrices_obj = effects_treat_time)
     ## Repeated measures design, suppose subjects from 4 independent treatment groups measured at 5 different timepoints.
     ## We use the same parameters as the independent design example, except we add within factor level correlation and we specify that fact ... [TRUNCATED]
     effects_treat_time <- calculate_mean_matrix(refmean = refmean, fAeffect = treateff, fBeffect = timeeff, nlfA = treatgroups,  nlfB = tim ... [TRUNCATED]
     rho = rho, withinf = withinf, label_list = list(treatment=letters[1:treatgroups], time=1:timepoints))
     repeatedmeasures_experiment <- twoway_simulation_correlated(group_size = n, matrices_obj = effects_treat_time)

Rd file 'effsize.Rd':
  \examples lines wider than 100 characters:
     effects_treat_time <- calculate_mean_matrix(refmean = refmean, nlfA = treatgroups, nlfB = timepoints, fAeffect = treateff, fBeffect = t ... [TRUNCATED]
     cellswithinteraction <- matrix(c(rep(2,3), 3:5), 3,2) #second level of factor A interacts with 3rd, 4th and 5th level of factor B
     effects_treat_time_interact <- calculate_mean_matrix(refmean = refmean, nlfA = treatgroups, nlfB = timepoints, fAeffect = treateff, fBe ... [TRUNCATED]

Rd file 'exact_twoway_anova_power.Rd':
  \examples lines wider than 100 characters:
     cellswithinteraction <- matrix(c(rep(2,3), 3:5), 3,2) #second level of factor A interacts with 3rd, 4th and 5th level of factor B
     effects_treat_time_interact <- calculate_mean_matrix(refmean = refmean, nlfA = treatgroups, nlfB = timepoints,
     fAeffect = treateff, fBeffect = timeeff, label_list = list(treatment=letters[1:treatgroups], time=1:timepoints),

Rd file 'simulate_twoway_nrange.Rd':
  \examples lines wider than 100 characters:
     effects_treat_time <- calculate_mean_matrix(refmean = refmean, fAeffect = treateff, fBeffect = timeeff, nlfA = treatgroups, nlfB = time ... [TRUNCATED]

Rd file 'test_power_overkn.Rd':
  \examples lines wider than 100 characters:
     indep_matrix <- calculate_mean_matrix(refmean = refmean, fAeffect = treateff, fBeffect = timeeff, nlfA = treatgroups, nlfB = timepoints ... [TRUNCATED]
     indep_skewsim <- simulate_twoway_nrange(indep_matrix, seq(6, 12, 2), distribution = "skewed", skewness = 1.8)

Rd file 'twoway_simulation_correlated.Rd':
  \examples lines wider than 100 characters:
     ## Repeated measures design, suppose subjects from 4 independent treatment groups measured at 5 different timepoints.
     rho = rho, withinf = withinf, label_list = list(treatment=letters[1:treatgroups], time=1:timepoints))
     repeatedmeasures_experiment <- twoway_simulation_correlated(group_size = n, matrices_obj = effects_treat_time)

Rd file 'twoway_simulation_independent.Rd':
  \examples lines wider than 100 characters:
     effects_treat_time <- calculate_mean_matrix(refmean = refmean, fAeffect = treateff, fBeffect = timeeff, nlfA = treatgroups, nlfB = time ... [TRUNCATED]
     independent_experiment <- twoway_simulation_independent(group_size = n, matrices_obj = effects_treat_time)

Rd file 'twoway_simulation_testing.Rd':
  \examples lines wider than 100 characters:
     effects_treat_time <- calculate_mean_matrix(refmean = refmean, fAeffect = treateff, fBeffect = timeeff,

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [227s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
                            user system elapsed
plot_powercurves          114.08   2.71  117.03
twoway_simulation_testing  50.53   1.04   51.61
test_power_overkn          46.57   1.40   48.01
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [542s] OK
  Running 'testthat.R' [542s]
* checking for unstated dependencies in vignettes ... NOTE
'::' or ':::' import not declared from: 'devtools'
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [257s] OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 WARNING, 5 NOTEs