* using log directory ‘/srv/hornik/tmp/CRAN/explainer.Rcheck’
* using R Under development (unstable) (2023-12-12 r85669)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.5 (1)
    Debian flang-new version 17.0.5 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘explainer/DESCRIPTION’ ... OK
* this is package ‘explainer’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Ramtin Zargari Marandi <ramtin.zargari.marandi@regionh.dk>’

New submission

Possibly misspelled words in DESCRIPTION:
  Explainer (2:31)
  Shapley (7:105)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘explainer’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/6s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [2991s/311s] WARNING
Found the following significant warnings:

  Warning: 'tidy.table' is deprecated.
  Warning: 'tidy.table' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
SHAPclust       589.131 14.612  64.959
shapPartialPlot 582.605 13.793  60.835
eSHAP_plot      582.218 14.113  60.778
ShapFeaturePlot 582.005 13.848  60.296
eSHAP_plot_reg  576.470 13.773  55.064
Examples with CPU time > 2.5 times elapsed time
                   user system elapsed  ratio
eSHAP_plot_reg  576.470 13.773  55.064 10.719
ShapFeaturePlot 582.005 13.848  60.296  9.882
eSHAP_plot      582.218 14.113  60.778  9.812
shapPartialPlot 582.605 13.793  60.835  9.804
SHAPclust       589.131 14.612  64.959  9.294
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ‘SHAP_clusters_kmeans246.pdf’ ‘confusion_matrices.pdf’
  ‘confusion_matrices.png’ ‘kmeans_info246.txt’
  ‘shap_PL_kmeans_clusters246.xlsx’
  ‘shap_PL_kmeans_clusters_detailed246.xlsx’
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 2 NOTEs