* using log directory 'd:/RCompile/CRANincoming/R-devel/explainer.Rcheck'
* using R Under development (unstable) (2023-11-21 r85583 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'explainer/DESCRIPTION' ... OK
* this is package 'explainer' version '1.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Ramtin Zargari Marandi <ramtin.zargari.marandi@regionh.dk>'

New submission

Possibly misspelled words in DESCRIPTION:
  Explainer (2:31)
  Shapley (7:172)

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  'cowplot', 'data.table', 'dplyr', 'ggplot2', 'mlr3', 'mlr3learners',
  'knitr', 'broom', 'cvms', 'iml', 'tidyverse', 'egg', 'ggpmisc',
  'ggpubr', 'magrittr', 'plotly', 'tibble', 'tidyr', 'writexl',
  'forcats', 'mlr3viz', 'plotROC', 'psych', 'reshape2'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'explainer' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'broom' 'cowplot' 'forcats' 'iml' 'knitr' 'mlr3' 'mlr3learners'
  'mlr3viz' 'plotROC' 'psych' 'reshape2' 'tidyverse'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s] NOTE
SHAPclust: no visible binding for global variable
  'prediction_correctness'
SHAPclust: no visible binding for global variable 'truth'
SHAPclust: no visible binding for global variable 'response'
SHAPclust: no visible binding for global variable 'fval'
SHAPclust: no visible binding for global variable '.SD'
SHAPclust: no visible binding for global variable 'variable'
SHAPclust: no visible binding for global variable 'mean_absolute_shap'
SHAPclust: no visible binding for global variable 'feature'
SHAPclust: no visible binding for global variable 'value'
SHAPclust: no visible binding for global variable 'sample_num'
SHAPclust: no visible global function definition for 'as_tibble'
SHAPclust: no visible global function definition for 'ggtitle'
ShapFeaturePlot: no visible binding for global variable 'f_val'
ShapFeaturePlot: no visible binding for global variable 'Phi'
ShapFeaturePlot: no visible binding for global variable
  'correct_prediction'
eDecisionCurve: no visible binding for global variable 'threshold'
eDecisionCurve: no visible binding for global variable 'value'
eDecisionCurve: no visible binding for global variable 'variable'
eFairness: no visible binding for global variable 'truth'
eFairness: no visible binding for global variable 'pos_class_prob'
eFairness: no visible binding for global variable 'subgroups'
eSHAP_plot: no visible binding for global variable 'feature'
eSHAP_plot: no visible binding for global variable 'sample_num'
eSHAP_plot: no visible binding for global variable 'correct_prediction'
eSHAP_plot_reg: no visible binding for global variable 'feature'
eSHAP_plot_reg: no visible binding for global variable 'sample_num'
eperformance: no visible binding for global variable 'fpr'
eperformance: no visible binding for global variable 'tpr'
eperformance: no visible binding for global variable 'threshold'
eperformance: no visible binding for global variable 'x'
eperformance: no visible binding for global variable 'y'
eperformance: no visible global function definition for
  'scale_x_continuous'
eperformance: no visible global function definition for
  'scale_y_continuous'
eperformance: no visible binding for global variable 'ppv'
shapPartialPlot: no visible binding for global variable 'f_val'
shapPartialPlot: no visible binding for global variable 'pred_prob'
shapPartialPlot: no visible binding for global variable
  'correct_prediction'
Undefined global functions or variables:
  .SD Phi as_tibble correct_prediction f_val feature fpr fval ggtitle
  mean_absolute_shap pos_class_prob ppv pred_prob
  prediction_correctness response sample_num scale_x_continuous
  scale_y_continuous subgroups threshold tpr truth value variable x y
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... OK
* DONE
Status: 4 NOTEs