* using log directory ‘/srv/hornik/tmp/CRAN_pretest/excerptr.Rcheck’
* using R Under development (unstable) (2025-10-10 r88914)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (7)
    Debian flang-new version 19.1.7 (7)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘excerptr/DESCRIPTION’ ... OK
* this is package ‘excerptr’ version ‘2.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/4s] NOTE
Maintainer: ‘Andreas Dominik Cullmann <fvafrcu@mailbox.org>’

New submission

Package was archived on CRAN

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2022-09-22 as issues were not corrected
    in time.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘excerptr’ can be installed ... [3s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] ERROR
Running examples in ‘excerptr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: excerptr
> ### Title: Excerpt Structuring Comments and Set a Table of Contents.
> ### Aliases: excerptr
> 
> ### ** Examples
> 
> if (reticulate::py_available(initialize = TRUE)) {
+     root <- system.file(package = "excerptr")
+     test_files <- file.path(root, "excerpts", "tests", "files")
+     outpath <- tempdir()
+     python_source <- "some_code.py"
+     f <- normalizePath(file.path(test_files, python_source))
+     cat(readLines(f), sep = "\n")
+     tryCatch(
+              excerptr(file_name = file.path(test_files, python_source),
+                       output_path = tempdir(), run_pandoc = FALSE,
+                       compile_latex = FALSE,
+                       pandoc_formats = c("tex", "html")),
+              error = identity)
+     f <- file.path(outpath, sub("\\.py$", ".md", python_source))
+     cat(readLines(f), sep = "\n")
+ }
#!/usr/bin/env python3
# #######% % All About Me
# #######% % Me
# ####### The above defines a pandoc markdown header.
# ####### This is more text that will not be extracted.
# #######% **This** is an example of a markdown paragraph: markdown 
# #######% recognizes only six levels of heading, so we use seven or
# #######% more levels to mark "normal" text.
# #######% Here you can use the full markdown 
# #######% [syntax](http://daringfireball.net/projects/markdown/syntax).
# #######% *Note* the trailing line: markdown needs an empty line to end
# #######% a paragraph.
# #######%

# #% A section
# ##% A subsection
# ### Not a subsubsection but a plain comment.
print('hello, world')
# ############% Another markdown paragraph.
# ############%
# ####### More text that will not be extracted.
Warning in file(con, "r") :
  cannot open file '/tmp/RtmpUbSSup/working_dir/Rtmp1YLD1y/some_code.md': No such file or directory
Error in file(con, "r") : cannot open the connection
Calls: cat -> readLines -> file
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [3s/3s] OK
  Running ‘runit.R’ [1s/1s]
  Running ‘testthat.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s/2s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE