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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(exametrika) > > test_check("exametrika") No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. Biclustering is chosen. iter 1 log_lik -7966.66 iter 2 log_lik -7442.38 iter 3 log_lik -7266.35 iter 4 log_lik -7151.26 iter 5 log_lik -7030.27 iter 6 log_lik -6999.01 iter 7 log_lik -6972.68 iter 8 log_lik -6966.98 iter 9 log_lik -6961.55 iter 10 log_lik -6957.42 iter 11 log_lik -6950.02 iter 12 log_lik -6947.13 iter 13 log_lik -6946.12 iter 14 log_lik -6946.44 Strongly ordinal alignment condition was satisfied. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. Ranklustering is chosen. iter 1 log_lik -8097.56 iter 2 log_lik -7669.21 iter 3 log_lik -7586.72 iter 4 log_lik -7568.24 iter 5 log_lik -7561.02 iter 6 log_lik -7557.34 iter 7 log_lik -7557.36 Strongly ordinal alignment condition was satisfied. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. Attaching package: 'igraph' The following object is masked from 'package:testthat': compare The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. Warning: The following students have all missing responses: S2, S12 No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. Warning: The following items have all missing values: id Note: The first column ('subject') has 12 unique values out of 15 rows. If this is an ID column, specify id=1. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. Warning: The following students have all missing responses: S3, S4, S5, S6, S7, S8, S9, S10, S11, S12, S13, S14, S15, S16, S17, S18, S19 Warning: The following students have all missing responses: S1, S2, S3, S4, S5, S6, S7, S8, S9, S10 No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. Warning: The following students have all missing responses: S5 Warning: The following students have all missing responses: S13, S14, S16, S18, S23 Warning: The following items have zero variance (constant values): item1 No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. Warning: The following students have all missing responses: S20, S24 The following items with no variance.Excluded from the data: item1, item2, item3 Warning: The following students have all missing responses: S5, S6 No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. Warning: The following items have zero variance (constant values): item1 No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. Optimal ncls/nrank is 3 and Optimal nfld is 3 Running analysis with optimal parameters... Biclustering is chosen. iter 1 log_lik -8342.15 iter 2 log_lik -7997.93 iter 3 log_lik -7951.63 iter 4 log_lik -7945.85 iter 5 log_lik -7943.97 iter 6 log_lik -7935.7 iter 7 log_lik -7934.89 iter 8 log_lik -7935.1 Strongly ordinal alignment condition was satisfied. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. Optimal ncls/nrank is 4 Running analysis with optimal parameters... iter 1 log_lik -3931.94 iter 2 log_lik -3881.61 iter 3 log_lik -3871.87 iter 4 log_lik -3863.93 iter 5 log_lik -3854.73 iter 6 log_lik -3845.5 iter 7 log_lik -3837.24 iter 8 log_lik -3830.25 iter 9 log_lik -3824.31 iter 10 log_lik -3819.07 iter 11 log_lik -3814.18 iter 12 log_lik -3809.38 iter 13 log_lik -3804.51 iter 14 log_lik -3799.5 iter 15 log_lik -3794.39 iter 16 log_lik -3789.28 iter 17 log_lik -3784.29 iter 18 log_lik -3779.54 iter 19 log_lik -3775.13 iter 20 log_lik -3771.13 iter 21 log_lik -3767.57 iter 22 log_lik -3764.45 iter 23 log_lik -3761.76 iter 24 log_lik -3759.45 iter 25 log_lik -3757.48 iter 26 log_lik -3755.81 iter 27 log_lik -3754.39 iter 28 log_lik -3753.18 iter 29 log_lik -3752.15 iter 30 log_lik -3751.26 iter 31 log_lik -3750.49 iter 32 log_lik -3749.82 iter 33 log_lik -3749.23 iter 34 log_lik -3748.72 iter 35 log_lik -3748.26 iter 36 log_lik -3747.85 iter 37 log_lik -3747.48 No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. iter 1 LogLik -3915.61 iter 2 LogLik -3901.1 iter 3 LogLik -3896.89 iter 4 LogLik -3894.98 iter 5 LogLik -3894.02 iter 6 LogLik -3893.53 iter 7 LogLik -3893.28 iter 8 LogLik -3893.15 iter 9 LogLik -3893.08 iter 10 LogLik -3893.04 iter 11 LogLik -3893.03 No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. iter 1 LogLik -3960.28 iter 2 LogLik -3938.35 iter 3 LogLik -3931.82 iter 4 LogLik -3928.68 iter 5 LogLik -3926.99 iter 6 LogLik -3926.05 iter 7 LogLik -3925.51 iter 8 LogLik -3925.19 iter 9 LogLik -3925.01 iter 10 LogLik -3924.9 iter 11 LogLik -3924.83 iter 12 LogLik -3924.8 iter 13 LogLik -3924.77 No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. iter 1 LogLik -4033.09 iter 2 LogLik -3993.92 iter 3 LogLik -3981.03 iter 4 LogLik -3974.77 iter 5 LogLik -3971.41 iter 6 LogLik -3969.51 iter 7 LogLik -3968.42 iter 8 LogLik -3967.78 iter 9 LogLik -3967.4 iter 10 LogLik -3967.18 iter 11 LogLik -3967.04 iter 12 LogLik -3966.96 iter 13 LogLik -3966.91 iter 14 LogLik -3966.88 iter 15 LogLik -3966.86 iter 1 log_lik -3920.06 iter 2 log_lik -3868.38 iter 3 log_lik -3856.57 iter 4 log_lik -3845.74 iter 5 log_lik -3833.37 iter 6 log_lik -3820.23 iter 7 log_lik -3806.72 iter 8 log_lik -3792.97 iter 9 log_lik -3779.19 iter 10 log_lik -3765.86 iter 11 log_lik -3753.64 iter 12 log_lik -3743.12 iter 13 log_lik -3734.56 iter 14 log_lik -3727.88 iter 15 log_lik -3722.77 iter 16 log_lik -3718.86 iter 17 log_lik -3715.8 iter 18 log_lik -3713.3 iter 19 log_lik -3711.18 iter 20 log_lik -3709.29 iter 21 log_lik -3707.55 iter 22 log_lik -3705.91 iter 23 log_lik -3704.34 iter 24 log_lik -3702.83 iter 25 log_lik -3701.39 iter 26 log_lik -3699.99 iter 27 log_lik -3698.66 iter 28 log_lik -3697.39 iter 29 log_lik -3696.18 iter 30 log_lik -3695.02 iter 31 log_lik -3693.92 iter 32 log_lik -3692.86 iter 33 log_lik -3691.86 iter 34 log_lik -3690.89 iter 35 log_lik -3689.96 iter 36 log_lik -3689.06 iter 37 log_lik -3688.17 iter 38 log_lik -3687.31 iter 39 log_lik -3686.45 iter 40 log_lik -3685.61 iter 41 log_lik -3684.76 iter 42 log_lik -3683.91 iter 43 log_lik -3683.07 iter 44 log_lik -3682.22 iter 45 log_lik -3681.37 iter 46 log_lik -3680.53 iter 47 log_lik -3679.69 iter 48 log_lik -3678.86 iter 49 log_lik -3678.05 iter 50 log_lik -3677.25 iter 51 log_lik -3676.47 iter 52 log_lik -3675.71 iter 53 log_lik -3674.97 iter 54 log_lik -3674.26 iter 55 log_lik -3673.57 iter 56 log_lik -3672.9 iter 57 log_lik -3672.24 iter 58 log_lik -3671.61 iter 59 log_lik -3670.99 iter 60 log_lik -3670.38 iter 61 log_lik -3669.79 iter 62 log_lik -3669.21 iter 63 log_lik -3668.64 iter 64 log_lik -3668.09 iter 65 log_lik -3667.55 iter 66 log_lik -3667.03 iter 67 log_lik -3666.53 iter 68 log_lik -3666.05 iter 69 log_lik -3665.59 iter 70 log_lik -3665.15 iter 71 log_lik -3664.74 iter 72 log_lik -3664.35 iter 73 log_lik -3663.99 No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. No ID column detected. All columns treated as response data. Sequential IDs (Student1, Student2, ...) were generated. Use id= parameter to specify the ID column explicitly. Ranklustering is chosen. iter 1 log_lik -22710.5 iter 2 log_lik -21311.9 iter 3 log_lik -21002.5 iter 4 log_lik -20945.8 iter 5 log_lik -20932.3 iter 6 log_lik -21060.3 iter 1 log_lik -16400.2 iter 2 log_lik -16394.3 iter 3 log_lik -16330.5 iter 4 log_lik -15845.9 iter 5 log_lik -14692 iter 6 log_lik -14160.1 iter 7 log_lik -13964.5 iter 8 log_lik -13927.8 iter 9 log_lik -13935.1 [ FAIL 0 | WARN 0 | SKIP 0 | PASS 3473 ] > > proc.time() user system elapsed 336.04 9.68 346.50