test_that("null model runthrough", { fit_null <- ewp_reg(eggs ~ 1, data = linnet) expect_s3_class(fit_null, "ewp") print(fit_null) summary(fit_null) #get estimates and compare against published estimates from Ridout & Besbeas (2004) coefs <- unname(coef(fit_null)) expect_equal(exp(coefs[1]),4.88,tolerance=0.017) expect_equal(coefs[2],1.46,tolerance=0.056) expect_equal(coefs[3],2.36,tolerance=0.056) #test that predict and fitted are non-empty expect_false(any(is.na(fit_null$fitted))) expect_equal(length(fit_null$fitted), fit_null$n) expect_false(any(is.na(predict(fit_null)))) expect_equal(length(predict(fit_null)), fit_null$n) }) test_that("NA handling and dropped levels", { set.seed(1234) linnet2 <- linnet linnet2$eggs[sample(nrow(linnet2), size = 100)] <- NA linnet2$arbfac <- factor(sample(letters[1:10], size = nrow(linnet2), replace = TRUE)) linnet2 <- subset(linnet2, arbfac %in% letters[1:5], drop = FALSE) fit_na <- ewp_reg(eggs ~ arbfac, data = linnet2) expect_s3_class(fit_na, "ewp") }) test_that("in-formula transforms", { set.seed(1234) fit_na <- ewp_reg(eggs ~ scale(cov2), data = linnet) expect_s3_class(fit_na, "ewp") }) test_that("simulation method", { fite <- ewp_reg(eggs ~ cov1 + cov2, data = linnet) sime <- simulate(fite, nsim = 1) expect_s3_class(sime, "data.frame") expect_equal(ncol(sime), 1) sime3 <- simulate(fite, nsim = 3, seed = 1234) expect_equal(ncol(sime3), 3) expect_equal(attr(sime3, 'seed')[1], 1234) })