* using log directory ‘/srv/hornik/tmp/CRAN_pretest/evolved.Rcheck’
* using R Under development (unstable) (2024-11-15 r87338)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘evolved/DESCRIPTION’ ... OK
* this is package ‘evolved’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/8s] NOTE
Maintainer: ‘Matheus Januario <januarioml.eco@gmail.com>’

New submission

The Title field starts with the package name.

Size of tarball: 7078298 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘evolved’ can be installed ... [3s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/11s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
WFDriftSim 0.044  0.001   7.555
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [1s/1s] OK
  Running ‘testthat.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [138s/142s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘birthdeath_deeptime.Rmd’ using rmarkdown
** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_deeptime_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16457 bytes
Input file size = 16559 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12456
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12456

Output IDAT size = 12456 bytes (4001 bytes decrease)
Output file size = 12534 bytes (4025 bytes = 24.31% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_deeptime_files/figure-html/unnamed-chunk-8-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17055 bytes
Input file size = 17157 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13490
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13490

Output IDAT size = 13490 bytes (3565 bytes decrease)
Output file size = 13568 bytes (3589 bytes = 20.92% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_deeptime_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13808 bytes
Input file size = 13898 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10886
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10886

Output IDAT size = 10886 bytes (2922 bytes decrease)
Output file size = 10964 bytes (2934 bytes = 21.11% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_deeptime_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5055 bytes
Input file size = 5913 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4631
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4612
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4612

Output IDAT size = 4612 bytes (443 bytes decrease)
Output file size = 4690 bytes (1223 bytes = 20.68% decrease)

--- finished re-building ‘birthdeath_deeptime.Rmd’

--- re-building ‘birthdeath_phylogenies.Rmd’ using rmarkdown
** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-4-1.png
288x288 pixels, 8 bits/pixel, 219 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 1749 bytes
Input file size = 2496 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1438
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 1431
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 1431

Output IDAT size = 1431 bytes (318 bytes decrease)
Output file size = 1509 bytes (987 bytes = 39.54% decrease)


Quitting from lines 96-101 [unnamed-chunk-5] (birthdeath_phylogenies.Rmd)
Error: processing vignette 'birthdeath_phylogenies.Rmd' failed with diagnostics:
Too many trees going extinct

--- failed re-building ‘birthdeath_phylogenies.Rmd’

--- re-building ‘deeptime_clocks.Rmd’ using rmarkdown
** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_clocks_files/figure-html/unnamed-chunk-15-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21191 bytes
Input file size = 21293 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15586
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15586

Output IDAT size = 15586 bytes (5605 bytes decrease)
Output file size = 15664 bytes (5629 bytes = 26.44% decrease)

--- finished re-building ‘deeptime_clocks.Rmd’

--- re-building ‘deeptime_rocks.Rmd’ using rmarkdown
** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5233 bytes
Input file size = 6091 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4759
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4759

Output IDAT size = 4759 bytes (474 bytes decrease)
Output file size = 4837 bytes (1254 bytes = 20.59% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-11-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12259 bytes
Input file size = 12349 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9210
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9210

Output IDAT size = 9210 bytes (3049 bytes decrease)
Output file size = 9288 bytes (3061 bytes = 24.79% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-12-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6080 bytes
Input file size = 6938 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5623
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5623

Output IDAT size = 5623 bytes (457 bytes decrease)
Output file size = 5701 bytes (1237 bytes = 17.83% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-13-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6127 bytes
Input file size = 6985 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5687
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5687

Output IDAT size = 5687 bytes (440 bytes decrease)
Output file size = 5765 bytes (1220 bytes = 17.47% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-14-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5584 bytes
Input file size = 6442 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5118
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5118

Output IDAT size = 5118 bytes (466 bytes decrease)
Output file size = 5196 bytes (1246 bytes = 19.34% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-15-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5315 bytes
Input file size = 6170 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4891
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4891

Output IDAT size = 4891 bytes (424 bytes decrease)
Output file size = 4969 bytes (1201 bytes = 19.47% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-17-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12407 bytes
Input file size = 12497 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10420
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10420

Output IDAT size = 10420 bytes (1987 bytes decrease)
Output file size = 10498 bytes (1999 bytes = 16.00% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-18-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14185 bytes
Input file size = 14275 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12242
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12242

Output IDAT size = 12242 bytes (1943 bytes decrease)
Output file size = 12320 bytes (1955 bytes = 13.70% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-19-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14838 bytes
Input file size = 14928 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13091
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13091

Output IDAT size = 13091 bytes (1747 bytes decrease)
Output file size = 13169 bytes (1759 bytes = 11.78% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-20-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17080 bytes
Input file size = 17182 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12620
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12620

Output IDAT size = 12620 bytes (4460 bytes decrease)
Output file size = 12698 bytes (4484 bytes = 26.10% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-21-1.png
960x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 85738 bytes
Input file size = 85936 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 71968
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 71968

Output IDAT size = 71968 bytes (13770 bytes decrease)
Output file size = 72046 bytes (13890 bytes = 16.16% decrease)

--- finished re-building ‘deeptime_rocks.Rmd’

--- re-building ‘intro_R.Rmd’ using rmarkdown
** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-43-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4984 bytes
Input file size = 5839 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4529
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4515
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4515

Output IDAT size = 4515 bytes (469 bytes decrease)
Output file size = 4593 bytes (1246 bytes = 21.34% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-44-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9795 bytes
Input file size = 10665 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9204
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 9191
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 9191

Output IDAT size = 9191 bytes (604 bytes decrease)
Output file size = 9269 bytes (1396 bytes = 13.09% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-45-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27877 bytes
Input file size = 27991 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22310
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22310

Output IDAT size = 22310 bytes (5567 bytes decrease)
Output file size = 22388 bytes (5603 bytes = 20.02% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-46-1.png
288x288 pixels, 8 bits/pixel, 244 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 2939 bytes
Input file size = 3761 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2468
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2460
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2460

Output IDAT size = 2460 bytes (479 bytes decrease)
Output file size = 2538 bytes (1223 bytes = 32.52% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-47-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5590 bytes
Input file size = 6448 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5039
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5010
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5010

Output IDAT size = 5010 bytes (580 bytes decrease)
Output file size = 5088 bytes (1360 bytes = 21.09% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-48-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9164 bytes
Input file size = 10034 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8664
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8664

Output IDAT size = 8664 bytes (500 bytes decrease)
Output file size = 8742 bytes (1292 bytes = 12.88% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-49-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19935 bytes
Input file size = 20037 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14048
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14048

Output IDAT size = 14048 bytes (5887 bytes decrease)
Output file size = 14126 bytes (5911 bytes = 29.50% decrease)

--- finished re-building ‘intro_R.Rmd’

--- re-building ‘phylogenies_and_diversification.Rmd’ using rmarkdown
** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/phylogenies_and_diversification_files/figure-html/unnamed-chunk-6-1.png
576x1152 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 114574 bytes
Input file size = 114808 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 90021
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 90021

Output IDAT size = 90021 bytes (24553 bytes decrease)
Output file size = 90099 bytes (24709 bytes = 21.52% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/phylogenies_and_diversification_files/figure-html/unnamed-chunk-7-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16927 bytes
Input file size = 17029 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13983
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13983

Output IDAT size = 13983 bytes (2944 bytes decrease)
Output file size = 14061 bytes (2968 bytes = 17.43% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/phylogenies_and_diversification_files/figure-html/unnamed-chunk-9-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7240 bytes
Input file size = 8098 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6495
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6495

Output IDAT size = 6495 bytes (745 bytes decrease)
Output file size = 6573 bytes (1525 bytes = 18.83% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/phylogenies_and_diversification_files/figure-html/unnamed-chunk-10-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33450 bytes
Input file size = 33576 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30971
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 30485
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 30485

Output IDAT size = 30485 bytes (2965 bytes decrease)
Output file size = 30563 bytes (3013 bytes = 8.97% decrease)

--- finished re-building ‘phylogenies_and_diversification.Rmd’

--- re-building ‘popgen_drift.Rmd’ using rmarkdown
** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12191 bytes
Input file size = 12281 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9548
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9548

Output IDAT size = 9548 bytes (2643 bytes decrease)
Output file size = 9626 bytes (2655 bytes = 21.62% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-13-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11129 bytes
Input file size = 11219 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8639
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8639

Output IDAT size = 8639 bytes (2490 bytes decrease)
Output file size = 8717 bytes (2502 bytes = 22.30% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-14-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5488 bytes
Input file size = 6346 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4991
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4991

Output IDAT size = 4991 bytes (497 bytes decrease)
Output file size = 5069 bytes (1277 bytes = 20.12% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-17-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17834 bytes
Input file size = 17936 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14373
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14373

Output IDAT size = 14373 bytes (3461 bytes decrease)
Output file size = 14451 bytes (3485 bytes = 19.43% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-17-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25892 bytes
Input file size = 26006 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20693
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20693

Output IDAT size = 20693 bytes (5199 bytes decrease)
Output file size = 20771 bytes (5235 bytes = 20.13% decrease)

--- finished re-building ‘popgen_drift.Rmd’

--- re-building ‘popgen_intro.Rmd’ using rmarkdown
** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/popgen_intro_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3848 bytes
Input file size = 4703 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3388
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3388

Output IDAT size = 3388 bytes (460 bytes decrease)
Output file size = 3466 bytes (1237 bytes = 26.30% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/popgen_intro_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8972 bytes
Input file size = 9062 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7021
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7021

Output IDAT size = 7021 bytes (1951 bytes decrease)
Output file size = 7099 bytes (1963 bytes = 21.66% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/popgen_intro_files/figure-html/unnamed-chunk-16-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12370 bytes
Input file size = 12460 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9913
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9913

Output IDAT size = 9913 bytes (2457 bytes decrease)
Output file size = 9991 bytes (2469 bytes = 19.82% decrease)

--- finished re-building ‘popgen_intro.Rmd’

--- re-building ‘popgen_selection.Rmd’ using rmarkdown
--- finished re-building ‘popgen_selection.Rmd’

--- re-building ‘population_genetics.Rmd’ using rmarkdown
** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/population_genetics_files/figure-html/unnamed-chunk-3-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39474 bytes
Input file size = 39600 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30984
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30984

Output IDAT size = 30984 bytes (8490 bytes decrease)
Output file size = 31062 bytes (8538 bytes = 21.56% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/population_genetics_files/figure-html/unnamed-chunk-5-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 205940 bytes
Input file size = 206318 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 203748
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 203748

Output IDAT size = 203748 bytes (2192 bytes decrease)
Output file size = 203826 bytes (2492 bytes = 1.21% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/population_genetics_files/figure-html/unnamed-chunk-6-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6928 bytes
Input file size = 7786 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6006
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5997
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5997

Output IDAT size = 5997 bytes (931 bytes decrease)
Output file size = 6075 bytes (1711 bytes = 21.98% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/population_genetics_files/figure-html/unnamed-chunk-7-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42776 bytes
Input file size = 42914 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33074
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33074

Output IDAT size = 33074 bytes (9702 bytes decrease)
Output file size = 33152 bytes (9762 bytes = 22.75% decrease)

--- finished re-building ‘population_genetics.Rmd’

--- re-building ‘rocks_and_clocks.Rmd’ using rmarkdown
** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-4-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34383 bytes
Input file size = 34509 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 32742
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 31962
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 31962

Output IDAT size = 31962 bytes (2421 bytes decrease)
Output file size = 32040 bytes (2469 bytes = 7.15% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-5-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10348 bytes
Input file size = 11218 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9341
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9341

Output IDAT size = 9341 bytes (1007 bytes decrease)
Output file size = 9419 bytes (1799 bytes = 16.04% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-5-2.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10382 bytes
Input file size = 11252 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9307
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9307

Output IDAT size = 9307 bytes (1075 bytes decrease)
Output file size = 9385 bytes (1867 bytes = 16.59% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-5-3.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9869 bytes
Input file size = 10739 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8790
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8790

Output IDAT size = 8790 bytes (1079 bytes decrease)
Output file size = 8868 bytes (1871 bytes = 17.42% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-11-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44449 bytes
Input file size = 44587 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35747
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35747

Output IDAT size = 35747 bytes (8702 bytes decrease)
Output file size = 35825 bytes (8762 bytes = 19.65% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-15-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11705 bytes
Input file size = 11795 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11037
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 10286
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 10286

Output IDAT size = 10286 bytes (1419 bytes decrease)
Output file size = 10364 bytes (1431 bytes = 12.13% decrease)

--- finished re-building ‘rocks_and_clocks.Rmd’

SUMMARY: processing the following file failed:
  ‘birthdeath_phylogenies.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs