* using log directory ‘/srv/hornik/tmp/CRAN_pretest/evola.Rcheck’ * using R Under development (unstable) (2024-09-25 r87194) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘evola/DESCRIPTION’ ... OK * this is package ‘evola’ version ‘1.0.2’ * checking CRAN incoming feasibility ... [4s/5s] INFO Maintainer: ‘Giovanny Covarrubias-Pazaran ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘evola’ can be installed ... [4s/4s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s/6s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [3s/3s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [96s/96s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘evola.intro.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN_pretest/evola.Rcheck/vign_test/evola/vignettes/evola.intro_files/figure-html/unnamed-chunk-2-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26317 bytes Input file size = 26431 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21535 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21535 Output IDAT size = 21535 bytes (4782 bytes decrease) Output file size = 21613 bytes (4818 bytes = 18.23% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/evola.Rcheck/vign_test/evola/vignettes/evola.intro_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23307 bytes Input file size = 23409 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18265 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18265 Output IDAT size = 18265 bytes (5042 bytes decrease) Output file size = 18343 bytes (5066 bytes = 21.64% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/evola.Rcheck/vign_test/evola/vignettes/evola.intro_files/figure-html/unnamed-chunk-7-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29652 bytes Input file size = 29766 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21642 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21642 Output IDAT size = 21642 bytes (8010 bytes decrease) Output file size = 21720 bytes (8046 bytes = 27.03% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/evola.Rcheck/vign_test/evola/vignettes/evola.intro_files/figure-html/unnamed-chunk-10-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20124 bytes Input file size = 20226 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15888 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15888 Output IDAT size = 15888 bytes (4236 bytes decrease) Output file size = 15966 bytes (4260 bytes = 21.06% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/evola.Rcheck/vign_test/evola/vignettes/evola.intro_files/figure-html/unnamed-chunk-10-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29223 bytes Input file size = 29337 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22803 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22803 Output IDAT size = 22803 bytes (6420 bytes decrease) Output file size = 22881 bytes (6456 bytes = 22.01% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/evola.Rcheck/vign_test/evola/vignettes/evola.intro_files/figure-html/unnamed-chunk-12-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21822 bytes Input file size = 21924 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17336 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17336 Output IDAT size = 17336 bytes (4486 bytes decrease) Output file size = 17414 bytes (4510 bytes = 20.57% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/evola.Rcheck/vign_test/evola/vignettes/evola.intro_files/figure-html/unnamed-chunk-15-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23194 bytes Input file size = 23296 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18714 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18714 Output IDAT size = 18714 bytes (4480 bytes decrease) Output file size = 18792 bytes (4504 bytes = 19.33% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/evola.Rcheck/vign_test/evola/vignettes/evola.intro_files/figure-html/unnamed-chunk-18-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22379 bytes Input file size = 22481 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17920 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17920 Output IDAT size = 17920 bytes (4459 bytes decrease) Output file size = 17998 bytes (4483 bytes = 19.94% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/evola.Rcheck/vign_test/evola/vignettes/evola.intro_files/figure-html/unnamed-chunk-22-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26667 bytes Input file size = 26781 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20610 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20610 Output IDAT size = 20610 bytes (6057 bytes decrease) Output file size = 20688 bytes (6093 bytes = 22.75% decrease) Quitting from lines 385-447 [unnamed-chunk-23] (evola.intro.Rmd) Error: processing vignette 'evola.intro.Rmd' failed with diagnostics: all(varG > 0) is not TRUE --- failed re-building ‘evola.intro.Rmd’ SUMMARY: processing the following file failed: ‘evola.intro.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR