* using log directory ‘/srv/hornik/tmp/CRAN/espadon.Rcheck’
* using R Under development (unstable) (2024-01-10 r85797)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (3)
    Debian flang-new version 17.0.6 (3)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘espadon/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘espadon’ version ‘1.5.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [6s/7s] Note_to_CRAN_maintainers
Maintainer: ‘Cathy Fontbonne <contact.espadon@lpccaen.in2p3.fr>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘espadon’ can be installed ... [51s/51s] OK
* used C++ compiler: ‘Debian clang version 17.0.6 (3)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [34s/34s] OK
* checking Rd files ... [3s/2s] NOTE
checkRd: (-1) display.DVH.Rd:28: Lost braces; missing escapes or markup?
    28 | if they exist, the quantile zones (Prob = {0, .025, .25, .5, .75, .975, 1})
       |                                           ^
checkRd: (-1) display.DVH.pc.Rd:27: Lost braces; missing escapes or markup?
    27 | displays, if they exist, the quantile zones (Prob = {0, .025, .25, .5, .75, .975, 1})
       |                                                     ^
checkRd: (-1) display.dV_dx.Rd:28: Lost braces; missing escapes or markup?
    28 | if they exist, the quantile zones (Prob = {0, .025, .25, .5, .75, .975, 1})
       |                                           ^
checkRd: (-1) display.histo.Rd:27: Lost braces; missing escapes or markup?
    27 | if they exist, the quantile zones (Prob = {0, .05, .25, .5, .75, .95, 1})
       |                                           ^
checkRd: (-1) espadon.class.Rd:135: Lost braces; missing escapes or markup?
   135 | \item \code{$orientation}: the xyz-coordinates of the two unit vectors of the plane orthogonal to the {$direction}.
       |                                                                                                       ^
checkRd: (-1) espadon.class.Rd:184: Lost braces; missing escapes or markup?
   184 | {- the "rtplan" class also includes :}
       | ^
checkRd: (-1) get.plane.Rd:58: Lost braces; missing escapes or markup?
    58 | \item If \code{xgrid} is not {NULL}, \code{origin + x.grid * plane.orientation[1:3]}
       |                              ^
checkRd: (-1) get.plane.Rd:60: Lost braces; missing escapes or markup?
    60 | \item If \code{ygrid} is not {NULL}, \code{origin + y.grid * plane.orientation[4:6]}
       |                              ^
checkRd: (-1) load.obj.data.Rd:17: Lost braces; missing escapes or markup?
    17 | Returns the \pkg{espadon} object with data \code{$vol3D.data} or {$roi.data}
       |                                                                  ^
checkRd: (-1) mesh.from.bin.Rd:81: Lost braces; missing escapes or markup?
    81 | set to FALSE. If all voxels are equal to FALSE, the function returns the code {NULL}.
       |                                                                               ^
checkRd: (-1) ref.srctodest.add.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{TM}{4x4 tansfert matrix for moving from \code{src.ref} to {dest.ref}.}
       |                                                                 ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [61s/60s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] OK
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [3s/3s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE