# File tests/testthat/test-valued-sim.R in package ergm, part of the # Statnet suite of packages for network analysis, https://statnet.org . # # This software is distributed under the GPL-3 license. It is free, # open source, and has the attribution requirements (GPL Section 7) at # https://statnet.org/attribution . # # Copyright 2003-2023 Statnet Commons ################################################################################ library(statnet.common) load("testnet3d.RData") ## StdNormal-reference run.stdnormal.test <- function() { # Joint distribution of (i,j) and (j,i) mu<-1 sig<-2 rho<-.3 # Naural parameters of bivariate normal # We ought to be able to specify them in a more interpretable way. denom<--2*(1-rho^2)*sig^2 xx.coef<-1/denom+1/2 # 1/2 is from the reference measure x.coef<-2*(-1+rho)*mu/denom xy.coef<--2*rho/denom theta<-c(x.coef,xy.coef,xx.coef) cat("mean=",mu,", var=",sig^2,", corr=",rho,"\neta=(",paste(theta,collapse=","),")\n",sep="") s<-simulate(testnet3d~sum+mutual("product")+sum(pow=2), nsim=1000, reference=~StdNormal, response="w", coef=theta, output="stats", control=control.simulate(MCMC.burnin=10000)) cat("Simulated mean (stats only):",mean(s[,1])/6,"\n",sep="") s.full<-simulate(testnet3d~sum+mutual("product")+sum(pow=2), nsim=1000, reference=~StdNormal, response="w", coef=theta, output='network', control=control.simulate(MCMC.burnin=10000)) s.cells<-sapply(s.full, function(x) as.matrix(x,m="a",a="w"),simplify=FALSE) cat("Simulated means (target=",mu,"):\n",sep="") print(matrix(c(NA, mean(sapply(s.cells,"[",1,2)), mean(sapply(s.cells,"[",1,3)), mean(sapply(s.cells,"[",2,1)), NA, mean(sapply(s.cells,"[",2,3)), mean(sapply(s.cells,"[",3,1)), mean(sapply(s.cells,"[",3,2)), NA),3,3,byrow=TRUE)) cat("Simulated vars (target=",sig^2,"):\n",sep="") print(matrix(c(NA, var(sapply(s.cells,"[",1,2)), var(sapply(s.cells,"[",1,3)), var(sapply(s.cells,"[",2,1)), NA, var(sapply(s.cells,"[",2,3)), var(sapply(s.cells,"[",3,1)), var(sapply(s.cells,"[",3,2)), NA),3,3,byrow=TRUE)) cat("Simulated correlations (1,2) (1,3) (2,3) (target=",rho,"):\n",sep="") print(c(cor(sapply(s.cells,"[",1,2),sapply(s.cells,"[",2,1)), cor(sapply(s.cells,"[",1,3),sapply(s.cells,"[",3,1)), cor(sapply(s.cells,"[",2,3),sapply(s.cells,"[",3,2)))) } test_that("Standard-normal-reference ERGM with mutuality by correlation", { expect_error(run.stdnormal.test(), NA) }) opttest({ set.seed(0) ## DiscUnif-reference test_that("Discrete-uniform-reference ERGM with minimum of -1 and maxium of 5", { f <- function(x, q, a, b) exp(q*x)/sum(exp(q*(a:b))) E <- function(q, a, b) sum((a:b)*exp(q*(a:b))/sum(exp(q*(a:b)))) V <- function(q, a, b) sum(((a:b)-E(q,a,b))^2*exp(q*(a:b))/sum(exp(q*(a:b)))) a <- -1; b <- 5; coefs <- c(runif(1,-3,3),0) for(coef in coefs){ cat("==== output='stats', coef=",coef,"\n",sep="") s <- simulate(testnet3d~sum, nsim=1000, reference=~DiscUnif(a,b), response="w", coef=coef, output='stats', control=control.simulate(MCMC.burnin=100)) test <- approx.hotelling.diff.test(s/6,mu0=E(coef,a,b)) expect_gte(test$p.value, 0.001) test <- approx.hotelling.diff.test((s-E(coef,a,b)*6)^2/6,mu0=V(coef,a,b)) expect_gte(test$p.value, 0.001) cat("==== output='network', coef=",coef,"\n",sep="") s.full<-simulate(testnet3d~sum, nsim=1000, reference=~DiscUnif(a,b), response="w", coef=coef, output='network', control=control.simulate(MCMC.burnin=100)) s <- sapply(s.full, function(x) sum(as.matrix(x,m="a",a="w")),simplify=TRUE) test <- approx.hotelling.diff.test(s/6,mu0=E(coef,a,b)) expect_gte(test$p.value, 0.001) test <- approx.hotelling.diff.test((s-E(coef,a,b)*6)^2/6,mu0=V(coef,a,b)) expect_gte(test$p.value, 0.001) } }) ## Unif-reference test_that("Continuous-uniform-reference ERGM with minimum of -1 and maxium of 5", { E <- function(q, a, b) if(isTRUE(all.equal(q,0))) (b+a)/2 else ((b*q-1)*exp(b*q)-(a*q-1)*exp(a*q))/(q*exp(b*q)-q*exp(a*q)) V <- function(q, a, b) if(isTRUE(all.equal(q,0))) (b-a)^2/12 else (((-b^2+2*a*b-a^2)*q^2-2)*exp(b*q+a*q)+exp(2*b*q)+exp(2*a*q))/(-2*q^2*exp(b*q+a*q)+q^2*exp(2*b*q)+q^2*exp(2*a*q)) a <- -1; b <- 5; coefs <- c(runif(1,-3,3),0) testnet3d %ergmlhs% "response" <- "w" for(coef in coefs){ cat("==== output='stats', coef=",coef,"\n",sep="") s <- simulate(testnet3d~sum, nsim=1000, reference=~Unif(a,b), coef=coef, output='stats', control=control.simulate(MCMC.burnin=100)) test <- approx.hotelling.diff.test(s/6,mu0=E(coef,a,b)) expect_gte(test$p.value, 0.001) test <- approx.hotelling.diff.test((s-E(coef,a,b)*6)^2/6,mu0=V(coef,a,b)) expect_gte(test$p.value, 0.001) cat("==== output='network', coef=",coef,"\n",sep="") s.full<-simulate(testnet3d~sum, nsim=1000, reference=~Unif(a,b), coef=coef, output='network', control=control.simulate(MCMC.burnin=100)) s <- sapply(s.full, function(x) sum(as.matrix(x,m="a",a="w")),simplify=TRUE) test <- approx.hotelling.diff.test(s/6,mu0=E(coef,a,b)) expect_gte(test$p.value, 0.001) test <- approx.hotelling.diff.test((s-E(coef,a,b)*6)^2/6,mu0=V(coef,a,b)) expect_gte(test$p.value, 0.001) } }) }, "continuous uniform reference")