* using log directory 'd:/RCompile/CRANincoming/R-devel/epts.Rcheck' * using R Under development (unstable) (2025-04-24 r88177 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'epts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'epts' version '1.1.4' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Mohammad Sayari ' New submission Non-FOSS package license (GNU General Public License (v3.0)) Possibly misspelled words in DESCRIPTION: EPTS (3:47) Multisite (4:53) multisite (16:87) Author field starts with 'Author:'. Package has a VignetteBuilder field but no prebuilt vignette index. The Description field should not start with the package name, 'This package' or similar. * checking package namespace information ... OK * checking package dependencies ... INFO Vignette dependency required without any vignettes: 'knitr' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'epts' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... WARNING Non-standard license specification: GNU General Public License (v3.0) Standardizable: FALSE Author field differs from that derived from Authors@R Author: 'Author: Mohammad Sayari [aut, cre], Akansha Singh [aut], Germaine Uwimpuhwe [aut], Nasima Akhter [aut], Tahani Coolen Maturi [aut], Rashmika Gupta [aut], Jochen Einbeck [aut]' Authors@R: 'Mohammad Sayari [aut, cre], Akansha Singh [aut], Germaine Uwimpuhwe [aut], Nasima Akhter [aut], Tahani Coolen Maturi [aut], Rashmika Gupta [aut], Jochen Einbeck [aut]' * checking top-level files ... NOTE Non-standard file/directory found at top level: 'epts_1.1.4.pdf' * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [20s] NOTE crtAddIntervention: no visible global function definition for 'aggregate' crtAddIntervention: no visible global function definition for 'as.formula' crtAddIntervention: no visible global function definition for 'sd' crtAddIntervention: no visible global function definition for 'rnorm' crtAddIntervention: no visible global function definition for 'model.matrix' crtDataSimulation: no visible global function definition for 'rnorm' forestPlotMultiArms: no visible global function definition for 'is' forestPlotMultiArms : : no visible global function definition for 'is' futilityAnalysis: no visible global function definition for 'as.formula' mstAddIntervention: no visible global function definition for 'aggregate' mstAddIntervention: no visible global function definition for 'as.formula' mstAddIntervention: no visible global function definition for 'rnorm' mstAddIntervention: no visible global function definition for 'na.omit' mstAddIntervention: no visible global function definition for 'rbinom' mstAddIntervention: no visible global function definition for 'sd' mstDataSimulation: no visible global function definition for 'rnorm' mstDataSimulation: no visible global function definition for 'model.matrix' multiArmTrialAnalysis: no visible global function definition for 'as.formula' plotObject: no visible global function definition for 'hist' plotObject: no visible global function definition for 'abline' plotObject: no visible global function definition for 'legend' plotObject: no visible global function definition for 'par' plotObject: no visible global function definition for 'barplot' plotObject: no visible global function definition for 'mtext' plotObject: no visible global function definition for 'title' plotObject: no visible global function definition for 'lines' plotObject: no visible global function definition for 'setNames' plotObject: no visible binding for global variable 'ES' plotObject: no visible binding for global variable 'Name' plotObject: no visible binding for global variable 'LB.95' plotObject: no visible binding for global variable 'UB.95' plotObject: no visible binding for global variable 'Xaxis' plotObject: no visible binding for global variable 'Anot' plotPosteriorProbs: no visible global function definition for 'as.formula' plotPosteriorProbs: no visible binding for global variable 'Threshold' plotPosteriorProbs: no visible binding for global variable 'Probability' plotPosteriorProbs: no visible binding for global variable 'Intervention' srtAddIntervention: no visible global function definition for 'sd' srtAddIntervention: no visible global function definition for 'na.omit' srtAddIntervention: no visible global function definition for 'rbinom' srtAddIntervention: no visible global function definition for 'rnorm' srtDataSimulation: no visible global function definition for 'rnorm' srtDataSimulation: no visible global function definition for 'model.matrix' superiorityAnalysis: no visible global function definition for 'as.formula' Undefined global functions or variables: Anot ES Intervention LB.95 Name Probability Threshold UB.95 Xaxis abline aggregate as.formula barplot hist is legend lines model.matrix mtext na.omit par rbinom rnorm sd setNames title Consider adding importFrom("graphics", "abline", "barplot", "hist", "legend", "lines", "mtext", "par", "title") importFrom("methods", "is") importFrom("stats", "aggregate", "as.formula", "model.matrix", "na.omit", "rbinom", "rnorm", "sd", "setNames") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: crtAddIntervention.Rd: lmer mstAddIntervention.Rd: lmer Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Variables with usage in Rd file 'crt4armSimData.Rd' but not in code: 'crt4armSimData' Variables with usage in Rd file 'mst4armSimData.Rd' but not in code: 'mst4armSimData' Variables with usage in Rd file 'srt4armSimData.Rd' but not in code: 'srt4armSimData' * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [20m] NOTE Examples with CPU (user + system) or elapsed time > 10s user system elapsed plotPosteriorProbs 605.15 1.51 607.23 futilityAnalysis 289.80 0.75 290.76 superiorityAnalysis 185.91 0.44 186.44 multiArmTrialAnalysis 127.82 0.44 128.30 * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... OK * DONE Status: 2 WARNINGs, 5 NOTEs