* using log directory 'd:/RCompile/CRANincoming/R-devel/epos.Rcheck' * using R Under development (unstable) (2024-03-14 r86117 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'epos/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'epos' version '1.1' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [10s] NOTE Maintainer: 'Bernd Mueller ' Found the following (possibly) invalid URLs: URL: https://travis-ci.org/bernd-mueller/epos (moved to https://app.travis-ci.com/bernd-mueller/epos) From: README.md Status: 301 Message: Moved Permanently For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'epos' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard file/directory found at top level: 'codemeta.json' * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE customQuad: no visible global function definition for 'flog.error' customQuad: no visible global function definition for 'gList' customQuad: no visible global function definition for 'gpar' customQuad: no visible global function definition for 'ellipse' customQuad: no visible global function definition for 'textGrob' customQuad: no visible global function definition for 'find.cat.pos' customQuad: no visible global function definition for 'grid.draw' drawEllipses: no visible global function definition for 'geom_ellipse' drawEllipses: no visible binding for global variable 'x0' drawEllipses: no visible binding for global variable 'y0' drawEllipses: no visible binding for global variable 'a' drawEllipses: no visible binding for global variable 'b' drawEllipses: no visible binding for global variable 'angle' drawEllipses: no visible binding for global variable 'm1' drawEllipses: no visible binding for global variable 'fill' drawEllipses: no visible global function definition for 'coord_fixed' drawEuler: no visible global function definition for 'plotVenn' drawEuler: no visible global function definition for 'showSVG' Undefined global functions or variables: a angle b coord_fixed ellipse fill find.cat.pos flog.error gList geom_ellipse gpar grid.draw m1 plotVenn showSVG textGrob x0 y0 Found if() conditions comparing class() to string: File 'epos/R/customQuad.R': if (!(class(cat.just) == "list" & length(cat.just) == 4 & length(cat.just[[1]]) == 2 & length(cat.just[[2]]) == 2 & length(cat.just[[3]]) == 2 & length(cat.just[[4]]) == 2)) ... File 'epos/R/customQuad.R': if (class(cex.prop) != "function") ... Use inherits() (or maybe is()) instead. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [10s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK Running 'testthat.R' * checking PDF version of manual ... [14s] OK * checking HTML version of manual ... OK * DONE Status: 3 NOTEs