downloading reverse dependencies ... downloading epiworldRShiny_0.1-0.tar.gz ... ok installing dependencies ‘epiworldR’, ‘netplot’ begin installing package ‘netplot’ begin installing package ‘epiworldR’ * installing *source* package ‘netplot’ ... ** this is package ‘netplot’ version ‘0.3-0’ ** package ‘netplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (netplot) * installing *source* package ‘epiworldR’ ... ** this is package ‘epiworldR’ version ‘0.6.1.0’ ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++-14 -std=gnu++17 accepts -g... yes checking for g++-14 -std=gnu++17 option to enable C++11 features... none needed checking how to run the C++ preprocessor... g++-14 -std=gnu++17 -E checking whether the compiler supports GNU C++... (cached) yes checking whether g++-14 -std=gnu++17 accepts -g... (cached) yes checking for g++-14 -std=gnu++17 option to enable C++11 features... (cached) none needed checking whether we have a suitable tempdir... /home/hornik/tmp/scratch checking whether R CMD SHLIB can already compile programs using OpenMP... yes checking whether to build the dev version... configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/epiworldR-package.R ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-12) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTNQckt/R.INSTALL2cd1af53a1905/epiworldR/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c actions.cpp -o actions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c agents.cpp -o agents.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c cpp11.cpp -o cpp11.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c db.cpp -o db.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c entities.cpp -o entities.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c epimodels.cpp -o epimodels.o In file included from ../inst/include/epiworld/epiworld.hpp:40, from epiworld-common.h:4, from epimodels.cpp:5: In member function ‘epiworld::UserData& epiworld::UserData::operator=(epiworld::UserData&&)’, inlined from ‘void epiworld::DataBase::set_user_data(std::vector >) [with TSeq = int]’ at ../inst/include/epiworld/database-meat.hpp:1061:15, inlined from ‘void epiworld::Model::set_user_data(std::vector >) [with TSeq = int]’ at ../inst/include/epiworld/model-meat.hpp:2160:21, inlined from ‘epiworld::epimodels::ModelSURV::ModelSURV(epiworld::epimodels::ModelSURV&, const std::string&, long long unsigned int, double, double, double, double, double, double, double, double, double, double, double) [with TSeq = int]’ at ../inst/include/epiworld/models/surveillance.hpp:335:24: ../inst/include/epiworld/userdata-bones.hpp:16:7: warning: ‘.epiworld::UserData::model’ may be used uninitialized [-Wmaybe-uninitialized] 16 | class UserData | ^~~~~~~~ In file included from ../inst/include/epiworld/epiworld.hpp:46: ../inst/include/epiworld/database-meat.hpp: In constructor ‘epiworld::epimodels::ModelSURV::ModelSURV(epiworld::epimodels::ModelSURV&, const std::string&, long long unsigned int, double, double, double, double, double, double, double, double, double, double, double) [with TSeq = int]’: ../inst/include/epiworld/database-meat.hpp:1061:17: note: ‘’ declared here 1061 | user_data = UserData(names); | ^~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c lfmcmc.cpp -o lfmcmc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c model.cpp -o model.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c tool.cpp -o tool.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c virus.cpp -o virus.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o epiworldR.so actions.o agents.o cpp11.o db.o entities.o epimodels.o lfmcmc.o model.o tool.o virus.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTNQckt/R.INSTALL2cd1af53a1905/epiworldR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-epiworldR/00new/epiworldR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epiworldR) checking epiworldR_0.6.1.0.tar.gz ... checking epiworldRShiny_0.1-0.tar.gz ... Depends: Package: epiworldR Depends: R (>= 4.1.0) Imports: utils LinkingTo: cpp11 Timings: user system elapsed epiworldR 96.905 7.496 109.622 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 0 Check results summary: epiworldR ... OK rdepends_epiworldRShiny ... NOTE * checking DESCRIPTION meta-information ... NOTE