* installing *source* package ‘epiworldR’ ...
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++-19 -std=gnu++17 accepts -g... yes
checking for clang++-19 -std=gnu++17 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... clang++-19 -std=gnu++17 -E
checking whether the compiler supports GNU C++... (cached) yes
checking whether clang++-19 -std=gnu++17 accepts -g... (cached) yes
checking for clang++-19 -std=gnu++17 option to enable C++11 features... (cached) none needed
checking whether we have a suitable tempdir... /tmp/RtmpRDQZtJ/working_dir
checking whether R CMD SHLIB can already compile programs using OpenMP... no
checking whether g++ version is sufficient... almost
configure: WARNING: Compiler self-identifies as being compliant with GNUC extensions but is not g++.
checking for macOS... no
checking whether to build the dev version... configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating R/epiworldR-package.R
** libs
using C++ compiler: ‘Debian clang version 19.1.5 (1)’
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/  -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c actions.cpp -o actions.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/  -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c agents.cpp -o agents.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/  -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c cpp11.cpp -o cpp11.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/  -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c db.cpp -o db.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/  -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c entities.cpp -o entities.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/  -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c epimodels.cpp -o epimodels.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/  -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c lfmcmc.cpp -o lfmcmc.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/  -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c model.cpp -o model.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/  -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c tool.cpp -o tool.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/  -Dprintf_epiworld=Rprintf -Depiworld_double=double -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c virus.cpp -o virus.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-19/lib -Wl,-O1 -o epiworldR.so actions.o agents.o cpp11.o db.o entities.o epimodels.o lfmcmc.o model.o tool.o virus.o -llapack -L/home/hornik/tmp/R-d-clang-19/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-19/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/epiworldR.Rcheck/00LOCK-epiworldR/00new/epiworldR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (epiworldR)