* using log directory 'd:/RCompile/CRANincoming/R-devel/epiworldRShiny.Rcheck'
* using R Under development (unstable) (2024-02-07 r85873 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'epiworldRShiny/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'epiworldRShiny' version '0.0-3.9000'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... WARNING
Maintainer: 'Derek Meyer <derekmeyer37@gmail.com>'

New submission

Version contains large components (0.0-3.9000)

Non-FOSS package license (file LICENSE)

Possibly misspelled words in DESCRIPTION:
  Epi (3:25)
  RShiny (3:38)
  SEIR (13:386)
  backend (13:183)

Strong dependencies not in mainstream repositories:
  epiworldR

Package has a VignetteBuilder field but no prebuilt vignette index.

Found the following (possibly) invalid URLs:
  URL: https://uofuepibio.github.io/epiworldRShiny/
    From: DESCRIPTION
    Status: 404
    Message: Not Found
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'epiworldRShiny' can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import 'shiny::dataTableOutput' by 'DT::dataTableOutput' when loading 'epiworldRShiny'
  Warning: replacing previous import 'shiny::renderDataTable' by 'DT::renderDataTable' when loading 'epiworldRShiny'
See 'd:/RCompile/CRANincoming/R-devel/epiworldRShiny.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
'LinkingTo' field is unused: package has no 'src' directory
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'Makefile'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
Missing or unexported objects:
  'epiworldR::add_globalevent' 'epiworldR::globalevent_tool'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s] NOTE
epiworldRShiny: no visible binding for global variable 'epiworldR_env'
epiworldRShiny : server: no visible binding for global variable
  'epiworldR_env'
epiworldRShiny : server : <anonymous>: no visible global function
  definition for 'write.csv'
plot_epi: no visible global function definition for 'reshape'
plot_epi: no visible global function definition for 'as.formula'
plot_reproductive_epi: no visible global function definition for
  'aggregate'
Undefined global functions or variables:
  aggregate as.formula epiworldR_env reshape write.csv
Consider adding
  importFrom("stats", "aggregate", "as.formula", "reshape")
  importFrom("utils", "write.csv")
to your NAMESPACE file.

Found the following assignments to the global environment:
File 'epiworldRShiny/R/app.R':
  assign("epiworldR_env", new.env(parent = .GlobalEnv), envir = .GlobalEnv)
File 'epiworldRShiny/R/functions-ui.R':
  assign(paste0(id, "_panel"), pfun(nam), envir = .GlobalEnv)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'epiworldRShiny'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in Rd file 'network_input.Rd'
  'model_name'

Undocumented arguments in Rd file 'npi_add_all.Rd'
  'input'

Undocumented arguments in Rd file 'npis_input.Rd'
  'model_name'

Undocumented arguments in Rd file 'numeric_input_ndays.Rd'
  'model_name'

Undocumented arguments in Rd file 'population_input.Rd'
  'model_name'

Undocumented arguments in Rd file 'seed_input.Rd'
  'model_name'

Undocumented arguments in Rd file 'simulate_button.Rd'
  'model_name'

Undocumented arguments in Rd file 'slider_input_rate.Rd'
  'model_name' 'rate_name' 'value' 'maxval' 'input_label'

Undocumented arguments in Rd file 'slider_prevalence.Rd'
  'model_name'

Undocumented arguments in Rd file 'text_input_disease_name.Rd'
  'model_name'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking examples ... NONE
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* checking for code which exercises the package ... WARNING
No examples, no tests, no vignettes
* DONE
Status: 6 WARNINGs, 3 NOTEs