R Under development (unstable) (2024-06-17 r86768 ucrt) -- "Unsuffered Consequences"
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> library(epigrowthfit)
> options(warn = 2L, error = if (interactive()) recover)
> 
> 
> ## exponential #########################################################
> 
> r <- log(2) / 20
> c0 <- 100
> 
> zz <- simulate(egf_model(curve = "exponential", family = "pois"),
+                nsim = 1L,
+                seed = 412575L,
+                mu = log(c(r, c0)),
+                cstart = 10)
> mm <- egf(zz)
> 
> stopifnot(all.equal(coef(zz), coef(mm), tolerance = 5e-02))
> 
> 
> ## subexponential ######################################################
> 
> alpha <- log(2) / 20
> c0 <- 100
> p <- 0.95
> 
> zz <- simulate(egf_model(curve = "subexponential", family = "pois"),
+                nsim = 1L,
+                seed = 696182L,
+                mu = c(log(alpha), log(c0), qlogis(p)),
+                cstart = 10)
> mm <- egf(zz,
+           formula_priors = list(logit(p) ~ Normal(mu = qlogis(p), sigma = 0.5)))
> 
> stopifnot(all.equal(coef(zz), coef(mm), tolerance = 5e-02))
> 
> 
> ## gompertz ############################################################
> 
> alpha <- log(2) / 20
> tinfl <- 100
> K <- 25000
> 
> zz <- simulate(egf_model(curve = "gompertz", family = "pois"),
+                nsim = 1L,
+                seed = 720748L,
+                mu = log(c(alpha, tinfl, K)),
+                cstart = 10)
> mm <- egf(zz)
> 
> stopifnot(all.equal(coef(zz), coef(mm), tolerance = 5e-02))
> 
> 
> ## logistic ############################################################
> 
> r <- log(2) / 20
> tinfl <- 100
> K <- 25000
> 
> zz <- simulate(egf_model(curve = "logistic", family = "pois"),
+                nsim = 1L,
+                seed = 366465L,
+                mu = log(c(r, tinfl, K)),
+                cstart = 10)
> mm <- egf(zz)
> 
> stopifnot(all.equal(coef(zz), coef(mm), tolerance = 5e-02))
> 
> 
> ## richards ############################################################
> 
> r <- log(2) / 20
> tinfl <- 100
> K <- 25000
> a <- 1.005
> 
> zz <- simulate(egf_model(curve = "richards", family = "pois"),
+                nsim = 1L,
+                seed = 51520L,
+                mu = log(c(r, tinfl, K, a)),
+                cstart = 10)
> mm <- egf(zz,
+           formula_priors = list(log(a) ~ Normal(mu = log(a), sigma = 0.05)))
> 
> stopifnot(all.equal(coef(zz), coef(mm), tolerance = 5e-02))
> 
> proc.time()
   user  system elapsed 
   1.79    0.17    1.95