R Under development (unstable) (2024-04-23 r86473 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(epigrowthfit) > options(warn = 2L, error = if (interactive()) recover) > > o.1 <- egf_cache( "egf-1.rds") > o.1f <- egf_cache("fitted-egf-1.rds") > > > ## object ############################################################## > > o.1f.e <- data.frame(top = gl(2L, 20L, labels = c("log(r)", "log(c0)")), + ts = gl(10L, 2L, 40L, labels = LETTERS[1:10]), + window = gl(20L, 1L, 40L, labels = sprintf("window_%02d", 1:20)), + value = as.double(o.1[["tmb_out"]][["env"]][[".__egf__."]][["adreport"]][["value"]]), + se = as.double(o.1[["tmb_out"]][["env"]][[".__egf__."]][["adreport"]][["sd"]])) > attr(o.1f.e, "se") <- TRUE > attr(o.1f.e, "ns") <- 20L > attr(o.1f.e, "nt") <- 2L > class(o.1f.e) <- c("fitted.egf", "data.frame") > stopifnot(identical(o.1f, o.1f.e)) > > > ## confint ############################################################# > > o.1fc <- confint(o.1f, level = 0.95, class = TRUE) > o.1fc.e <- o.1f[, c("top", "ts", "window", "value")] > o.1fc.e[["ci"]] <- + `dimnames<-`(epigrowthfit:::wald(o.1f[["value"]], o.1f[["se"]], + level = 0.95), + list(NULL, c("2.5 %", "97.5 %"))) > attr(o.1fc.e, "level") <- 0.95 > class(o.1fc.e) <- c("confint.egf", "data.frame") > stopifnot(identical(o.1fc, o.1fc.e)) > > proc.time() user system elapsed 1.34 0.10 1.42