* using log directory ‘/srv/hornik/tmp/CRAN_pretest/epiR.Rcheck’
* using R Under development (unstable) (2025-11-04 r88984)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (7)
    Debian flang-new version 19.1.7 (7)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘epiR/DESCRIPTION’ ... OK
* this is package ‘epiR’ version ‘2.0.89’
* checking CRAN incoming feasibility ... [4s/5s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘epiR’ can be installed ... [15s/16s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking whether startup messages can be suppressed ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [28s/28s] OK
* checking Rd files ... [1s/1s] NOTE
checkRd: (-1) epi.2by2.Rd:54-63: Only 4 columns allowed in this table (row 1 has 3)
checkRd: (-1) epi.2by2.Rd:54-63: Only 4 columns allowed in this table (row 2 has 3)
checkRd: (-1) epi.2by2.Rd:54-63: Only 4 columns allowed in this table (row 3 has 3)
checkRd: (-1) epi.2by2.Rd:54-63: Only 4 columns allowed in this table (row 4 has 3)
checkRd: (-1) epi.2by2.Rd:54-63: Only 4 columns allowed in this table (row 5 has 3)
checkRd: (-1) epi.2by2.Rd:54-63: Only 4 columns allowed in this table (row 6 has 3)
checkRd: (-1) epi.2by2.Rd:54-63: Only 4 columns allowed in this table (row 7 has 3)
checkRd: (-1) epi.2by2.Rd:54-63: Only 4 columns allowed in this table (row 8 has 3)
checkRd: (-1) rsu.dxtest.Rd:93-103: Only 5 columns allowed in this table (row 1 has 4)
checkRd: (-1) rsu.dxtest.Rd:93-103: Only 5 columns allowed in this table (row 2 has 4)
checkRd: (-1) rsu.dxtest.Rd:93-103: Only 5 columns allowed in this table (row 3 has 4)
checkRd: (-1) rsu.dxtest.Rd:93-103: Only 5 columns allowed in this table (row 4 has 4)
checkRd: (-1) rsu.dxtest.Rd:93-103: Only 5 columns allowed in this table (row 5 has 4)
checkRd: (-1) rsu.dxtest.Rd:93-103: Only 5 columns allowed in this table (row 6 has 4)
checkRd: (-1) rsu.dxtest.Rd:93-103: Only 5 columns allowed in this table (row 7 has 4)
checkRd: (-1) rsu.dxtest.Rd:93-103: Only 5 columns allowed in this table (row 8 has 4)
checkRd: (-1) rsu.dxtest.Rd:93-103: Only 5 columns allowed in this table (row 9 has 4)
checkRd: (-1) rsu.dxtest.Rd:107-117: Only 5 columns allowed in this table (row 1 has 4)
checkRd: (-1) rsu.dxtest.Rd:107-117: Only 5 columns allowed in this table (row 2 has 4)
checkRd: (-1) rsu.dxtest.Rd:107-117: Only 5 columns allowed in this table (row 3 has 4)
checkRd: (-1) rsu.dxtest.Rd:107-117: Only 5 columns allowed in this table (row 4 has 4)
checkRd: (-1) rsu.dxtest.Rd:107-117: Only 5 columns allowed in this table (row 5 has 4)
checkRd: (-1) rsu.dxtest.Rd:107-117: Only 5 columns allowed in this table (row 6 has 4)
checkRd: (-1) rsu.dxtest.Rd:107-117: Only 5 columns allowed in this table (row 7 has 4)
checkRd: (-1) rsu.dxtest.Rd:107-117: Only 5 columns allowed in this table (row 8 has 4)
checkRd: (-1) rsu.dxtest.Rd:107-117: Only 5 columns allowed in this table (row 9 has 4)
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [18s/18s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [52s/52s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘epiR_descriptive_epi.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
! Package fontspec Error: 
(fontspec)                The font "Arial" cannot be found; this may be but
(fontspec)                usually is not a fontspec bug. Either there is a
(fontspec)                typo in the font name/file, the font is not
(fontspec)                installed (correctly), or there is a bug in the
(fontspec)                underlying font loading engine (XeTeX/luaotfload).

! kpathsea: Running mktextfm Arial
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation A for Arial.
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! /usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation A for Arial.
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! kpathsea: Running mktexmf Arial

! ! I can't find file `Arial'.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! Please type another input file name
! ! Emergency stop.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! ! Emergency stop.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! Transcript written on mfput.log.

! grep: Arial.log: No such file or directory

! mktextfm: `mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial' failed to make Arial.tfm.

! kpathsea: Appending font creation commands to missfont.log.

Error: processing vignette 'epiR_descriptive_epi.Rmd' failed with diagnostics:
LaTeX failed to compile /srv/hornik/tmp/CRAN_pretest/epiR.Rcheck/vign_test/epiR/vignettes/epiR_descriptive_epi.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See epiR_descriptive_epi.log for more info.
--- failed re-building ‘epiR_descriptive_epi.Rmd’

--- re-building ‘epiR_diagnostic_tests.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
! Package fontspec Error: 
(fontspec)                The font "Arial" cannot be found; this may be but
(fontspec)                usually is not a fontspec bug. Either there is a
(fontspec)                typo in the font name/file, the font is not
(fontspec)                installed (correctly), or there is a bug in the
(fontspec)                underlying font loading engine (XeTeX/luaotfload).

! kpathsea: Running mktextfm Arial
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation A for Arial.
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! /usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation A for Arial.
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! kpathsea: Running mktexmf Arial

! ! I can't find file `Arial'.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! Please type another input file name
! ! Emergency stop.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! ! Emergency stop.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! Transcript written on mfput.log.

! grep: Arial.log: No such file or directory

! mktextfm: `mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial' failed to make Arial.tfm.

! kpathsea: Appending font creation commands to missfont.log.

Error: processing vignette 'epiR_diagnostic_tests.Rmd' failed with diagnostics:
LaTeX failed to compile /srv/hornik/tmp/CRAN_pretest/epiR.Rcheck/vign_test/epiR/vignettes/epiR_diagnostic_tests.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See epiR_diagnostic_tests.log for more info.
--- failed re-building ‘epiR_diagnostic_tests.Rmd’

--- re-building ‘epiR_measures_of_assoc.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
! Package fontspec Error: 
(fontspec)                The font "Arial" cannot be found; this may be but
(fontspec)                usually is not a fontspec bug. Either there is a
(fontspec)                typo in the font name/file, the font is not
(fontspec)                installed (correctly), or there is a bug in the
(fontspec)                underlying font loading engine (XeTeX/luaotfload).

! kpathsea: Running mktextfm Arial
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation A for Arial.
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! /usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation A for Arial.
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! kpathsea: Running mktexmf Arial

! ! I can't find file `Arial'.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! Please type another input file name
! ! Emergency stop.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! ! Emergency stop.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! Transcript written on mfput.log.

! grep: Arial.log: No such file or directory

! mktextfm: `mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial' failed to make Arial.tfm.

! kpathsea: Appending font creation commands to missfont.log.

Error: processing vignette 'epiR_measures_of_assoc.Rmd' failed with diagnostics:
LaTeX failed to compile /srv/hornik/tmp/CRAN_pretest/epiR.Rcheck/vign_test/epiR/vignettes/epiR_measures_of_assoc.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See epiR_measures_of_assoc.log for more info.
--- failed re-building ‘epiR_measures_of_assoc.Rmd’

--- re-building ‘epiR_sample_size.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
! Package fontspec Error: 
(fontspec)                The font "Arial" cannot be found; this may be but
(fontspec)                usually is not a fontspec bug. Either there is a
(fontspec)                typo in the font name/file, the font is not
(fontspec)                installed (correctly), or there is a bug in the
(fontspec)                underlying font loading engine (XeTeX/luaotfload).

! kpathsea: Running mktextfm Arial
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation A for Arial.
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! /usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation A for Arial.
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! kpathsea: Running mktexmf Arial

! ! I can't find file `Arial'.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! Please type another input file name
! ! Emergency stop.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! ! Emergency stop.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! Transcript written on mfput.log.

! grep: Arial.log: No such file or directory

! mktextfm: `mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial' failed to make Arial.tfm.

! kpathsea: Appending font creation commands to missfont.log.

Error: processing vignette 'epiR_sample_size.Rmd' failed with diagnostics:
LaTeX failed to compile /srv/hornik/tmp/CRAN_pretest/epiR.Rcheck/vign_test/epiR/vignettes/epiR_sample_size.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See epiR_sample_size.log for more info.
--- failed re-building ‘epiR_sample_size.Rmd’

--- re-building ‘epiR_surveillance.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
! Package fontspec Error: 
(fontspec)                The font "Arial" cannot be found; this may be but
(fontspec)                usually is not a fontspec bug. Either there is a
(fontspec)                typo in the font name/file, the font is not
(fontspec)                installed (correctly), or there is a bug in the
(fontspec)                underlying font loading engine (XeTeX/luaotfload).

! kpathsea: Running mktextfm Arial
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation A for Arial.
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! /usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation A for Arial.
! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! /usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update /usr/share/texlive/texmf-dist/fonts/map/fontname/special.map?
! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial
! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf)

! kpathsea: Running mktexmf Arial

! ! I can't find file `Arial'.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! Please type another input file name
! ! Emergency stop.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! ! Emergency stop.
! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! <*> ...=ljfour; mag:=1; ; nonstopmode; input Arial

! Transcript written on mfput.log.

! grep: Arial.log: No such file or directory

! mktextfm: `mf-nowin -progname=mf \mode:=ljfour; mag:=1; ; nonstopmode; input Arial' failed to make Arial.tfm.

! kpathsea: Appending font creation commands to missfont.log.

Error: processing vignette 'epiR_surveillance.Rmd' failed with diagnostics:
LaTeX failed to compile /srv/hornik/tmp/CRAN_pretest/epiR.Rcheck/vign_test/epiR/vignettes/epiR_surveillance.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See epiR_surveillance.log for more info.
--- failed re-building ‘epiR_surveillance.Rmd’

SUMMARY: processing the following files failed:
  ‘epiR_descriptive_epi.Rmd’ ‘epiR_diagnostic_tests.Rmd’
  ‘epiR_measures_of_assoc.Rmd’ ‘epiR_sample_size.Rmd’
  ‘epiR_surveillance.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [9s/9s] OK
* checking HTML version of manual ... [3s/3s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE