Package check result: NOTE Check: dependencies in R code, Result: NOTE H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f7000567191 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f70009339e3 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f7000921faa in H5T__register /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f700090a3da in H5T__register_int /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f700090106d in H5T__init_package /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f70008f9e70 in H5T_init /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f700010ee62 in H5_init_library /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f700011507c in H5open /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f7000093476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7f6fff79ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7f6fff79ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7f701a76329d in call_init elf/dl-init.c:74:3 #12 0x7f701a76329d in call_init elf/dl-init.c:26:1 #13 0x7f701a76338b in _dl_init elf/dl-init.c:121:5 #14 0x7f701a760535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7f701a769f2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7f701a7604a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7f701a76a2a7 in _dl_open elf/dl-open.c:880:17 #18 0x7f7018fb1f97 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7f701a7604a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7f701a7605ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7f7018fb1aa6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7f7018fb2048 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7f7018fb2048 in dlopen dlfcn/dlopen.c:81:12 #24 0x558c9130c2f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7f70199127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7f7019911bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7f7019ced889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7f7019ca1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7f7019ca061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7f7019ca251f in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #31 0x7f7019ca074e in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #32 0x7f7019cf6cc2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #33 0x7f7019ca1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #34 0x7f7019ca061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #35 0x7f7019caad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #36 0x7f7019ca686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #37 0x7f7019ca0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #38 0x7f7019ca0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #39 0x7f7019de4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #40 0x7f7019de7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #41 0x7f7019de75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #42 0x7f7019de785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #43 0x558c9138bdd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #44 0x7f7018f4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #45 0x7f7018f4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #46 0x558c912a8370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f7000562679 in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f70008d9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f7000561dd7 in H5I_clear_type /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f700090c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f700010ff61 in H5_term_library /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f70001151a0 in H5close /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7f7000092fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/Rtmp2EOGSM/R.INSTALL3e57ec441f4029/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7f7018f66260 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7f7018f66319 in exit stdlib/exit.c:138:3 #9 0x7f701a1971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7f701a1a1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7f7019de75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7f7019de75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7f7019de785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x558c9138bdd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7f7018f4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7f7018f4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x558c912a8370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 Post-processing issues found: File: 00check.log H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)'