installing dependencies ‘animation’, ‘BiocParallel’, ‘crosstalk’, ‘data.table’, ‘DT’, ‘igraph’, ‘knitr’, ‘mixtools’, ‘MSnbase’, ‘plotly’, ‘RColorBrewer’, ‘Rdisop’, ‘rmarkdown’, ‘shiny’, ‘testthat’, ‘xcms’ also installing the dependencies ‘BiocBaseUtils’, ‘sys’, ‘formatR’, ‘colorspace’, ‘matrixStats’, ‘XVector’, ‘UCSC.utils’, ‘GenomeInfoDbData’, ‘abind’, ‘SparseArray’, ‘MultiAssayExperiment’, ‘AnnotationFilter’, ‘reshape2’, ‘statmod’, ‘askpass’, ‘stringi’, ‘utf8’, ‘rappdirs’, ‘lambda.r’, ‘futile.options’, ‘curl’, ‘farver’, ‘labeling’, ‘munsell’, ‘fs’, ‘pkgbuild’, ‘rprojroot’, ‘diffobj’, ‘ncdf4’, ‘Rhdf5lib’, ‘MatrixGenerics’, ‘GenomicRanges’, ‘GenomeInfoDb’, ‘S4Arrays’, ‘DelayedArray’, ‘clue’, ‘QFeatures’, ‘DBI’, ‘hms’, ‘prettyunits’, ‘limma’, ‘affyio’, ‘BiocManager’, ‘preprocessCore’, ‘zlibbioc’, ‘XML’, ‘doParallel’, ‘foreach’, ‘iterators’, ‘gtable’, ‘isoband’, ‘openssl’, ‘stringr’, ‘tidyselect’, ‘generics’, ‘pillar’, ‘fansi’, ‘memoise’, ‘sass’, ‘Rcpp’, ‘futile.logger’, ‘snow’, ‘BH’, ‘cpp11’, ‘magick’, ‘kernlab’, ‘scales’, ‘segmented’, ‘cli’, ‘lifecycle’, ‘magrittr’, ‘pkgconfig’, ‘rlang’, ‘vctrs’, ‘evaluate’, ‘highr’, ‘xfun’, ‘yaml’, ‘brio’, ‘callr’, ‘desc’, ‘digest’, ‘jsonlite’, ‘pkgload’, ‘praise’, ‘processx’, ‘ps’, ‘R6’, ‘waldo’, ‘withr’, ‘mzR’, ‘Biobase’, ‘BiocGenerics’, ‘ProtGenerics’, ‘MassSpecWavelet’, ‘S4Vectors’, ‘IRanges’, ‘SummarizedExperiment’, ‘MsCoreUtils’, ‘MsFeatures’, ‘MsExperiment’, ‘Spectra’, ‘progress’, ‘MetaboCoreUtils’, ‘PSMatch’, ‘plyr’, ‘vsn’, ‘affy’, ‘impute’, ‘pcaMethods’, ‘MALDIquant’, ‘mzID’, ‘ggplot2’, ‘httr’, ‘viridisLite’, ‘base64enc’, ‘htmltools’, ‘htmlwidgets’, ‘tidyr’, ‘dplyr’, ‘tibble’, ‘lazyeval’, ‘purrr’, ‘promises’, ‘httpuv’, ‘mime’, ‘xtable’, ‘fontawesome’, ‘sourcetools’, ‘later’, ‘crayon’, ‘fastmap’, ‘commonmark’, ‘glue’, ‘bslib’, ‘cachem’, ‘jquerylib’, ‘tinytex’ begin installing package ‘BiocBaseUtils’ begin installing package ‘sys’ begin installing package ‘formatR’ begin installing package ‘colorspace’ begin installing package ‘matrixStats’ begin installing package ‘GenomeInfoDbData’ begin installing package ‘abind’ begin installing package ‘statmod’ begin installing package ‘stringi’ begin installing package ‘utf8’ begin installing package ‘rappdirs’ begin installing package ‘futile.options’ begin installing package ‘curl’ begin installing package ‘farver’ begin installing package ‘labeling’ begin installing package ‘fs’ begin installing package ‘rprojroot’ begin installing package ‘ncdf4’ begin installing package ‘Rhdf5lib’ begin installing package ‘clue’ begin installing package ‘DBI’ begin installing package ‘prettyunits’ begin installing package ‘BiocManager’ begin installing package ‘preprocessCore’ begin installing package ‘zlibbioc’ begin installing package ‘XML’ begin installing package ‘iterators’ begin installing package ‘isoband’ * installing *source* package ‘futile.options’ ... ** this is package ‘futile.options’ version ‘1.0.1’ ** package ‘futile.options’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (futile.options) begin installing package ‘generics’ * installing *source* package ‘zlibbioc’ ... ** this is package ‘zlibbioc’ version ‘1.52.0’ ** package ‘zlibbioc’ successfully unpacked and MD5 sums checked ** using staged installation configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOqGUrm/R.INSTALL3ba6fa1256b2d7/zlibbioc/src' mkdir -p "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-zlibbioc/00new/zlibbioc/include" clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_zlibbioc.c -o R_init_zlibbioc.o R_init_zlibbioc.c:1:20: warning: ISO C requires a translation unit to contain at least one declaration [-Wempty-translation-unit] 1 | /* do not remove */ | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o zlibbioc.so R_init_zlibbioc.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOqGUrm/R.INSTALL3ba6fa1256b2d7/zlibbioc/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-zlibbioc/00new/zlibbioc/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in fun(libname, pkgname) : Package 'zlibbioc' is deprecated and will be removed from Bioconductor version 3.22 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning in fun(libname, pkgname) : Package 'zlibbioc' is deprecated and will be removed from Bioconductor version 3.22 ** testing if installed package keeps a record of temporary installation path * DONE (zlibbioc) begin installing package ‘fansi’ * installing *source* package ‘GenomeInfoDbData’ ... ** this is package ‘GenomeInfoDbData’ version ‘1.2.13’ ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomeInfoDbData) begin installing package ‘Rcpp’ * installing *source* package ‘rappdirs’ ... ** this is package ‘rappdirs’ version ‘0.3.3’ ** package ‘rappdirs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2A90hL/R.INSTALL3ba6d1440226c7/rappdirs/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c win-path.c -o win-path.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o rappdirs.so init.o win-path.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2A90hL/R.INSTALL3ba6d1440226c7/rappdirs/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-rappdirs/00new/rappdirs/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rappdirs) begin installing package ‘snow’ * installing *source* package ‘BiocBaseUtils’ ... ** this is package ‘BiocBaseUtils’ version ‘1.8.0’ ** package ‘BiocBaseUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocBaseUtils) begin installing package ‘BH’ * installing *source* package ‘sys’ ... ** this is package ‘sys’ version ‘3.4.3’ ** package ‘sys’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpelTbP3/R.INSTALL3ba6a46ceb17e6/sys/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c exec.c -o exec.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sys.so exec.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpelTbP3/R.INSTALL3ba6a46ceb17e6/sys/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sys/00new/sys/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sys) begin installing package ‘cpp11’ * installing *source* package ‘iterators’ ... ** this is package ‘iterators’ version ‘1.0.14’ ** package ‘iterators’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iterators) begin installing package ‘kernlab’ * installing *source* package ‘rprojroot’ ... ** this is package ‘rprojroot’ version ‘2.0.4’ ** package ‘rprojroot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rprojroot) begin installing package ‘segmented’ * installing *source* package ‘formatR’ ... ** this is package ‘formatR’ version ‘1.14’ ** package ‘formatR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (formatR) begin installing package ‘cli’ * installing *source* package ‘labeling’ ... ** this is package ‘labeling’ version ‘0.4.3’ ** package ‘labeling’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (labeling) begin installing package ‘magrittr’ * installing *source* package ‘prettyunits’ ... ** this is package ‘prettyunits’ version ‘1.2.0’ ** package ‘prettyunits’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prettyunits) begin installing package ‘pkgconfig’ * installing *source* package ‘abind’ ... ** this is package ‘abind’ version ‘1.4-8’ ** package ‘abind’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (abind) begin installing package ‘rlang’ * installing *source* package ‘BiocManager’ ... ** this is package ‘BiocManager’ version ‘1.30.25’ ** package ‘BiocManager’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocManager) begin installing package ‘evaluate’ * installing *source* package ‘generics’ ... ** this is package ‘generics’ version ‘0.1.3’ ** package ‘generics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (generics) begin installing package ‘xfun’ * installing *source* package ‘pkgconfig’ ... ** this is package ‘pkgconfig’ version ‘2.0.3’ ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgconfig) begin installing package ‘yaml’ * installing *source* package ‘snow’ ... ** this is package ‘snow’ version ‘0.4-4’ ** package ‘snow’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (snow) begin installing package ‘brio’ * installing *source* package ‘cpp11’ ... ** this is package ‘cpp11’ version ‘0.5.1’ ** package ‘cpp11’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cpp11) begin installing package ‘digest’ * installing *source* package ‘curl’ ... ** this is package ‘curl’ version ‘6.1.0’ ** package ‘curl’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 Using PKG_LIBS=-lcurl Found recent recent version of libcurl ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdVzZzC/R.INSTALL3ba6e35a455a95/curl/src' rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o urlparser.o utils.o version.o winidn.o writer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c callbacks.c -o callbacks.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c curl.c -o curl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c download.c -o download.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c escape.c -o escape.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c fetch.c -o fetch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c findport.c -o findport.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c form.c -o form.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c getdate.c -o getdate.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c handle.c -o handle.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ieproxy.c -o ieproxy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c interrupt.c -o interrupt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c multi.c -o multi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c nslookup.c -o nslookup.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c options.c -o options.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c reflist.c -o reflist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c split.c -o split.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ssl.c -o ssl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c typechecking.c -o typechecking.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c urlparser.c -o urlparser.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c winidn.c -o winidn.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c writer.c -o writer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o curl.so callbacks.o curl.o download.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o urlparser.o utils.o version.o winidn.o writer.o -lcurl -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdVzZzC/R.INSTALL3ba6e35a455a95/curl/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-curl/00new/curl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (curl) begin installing package ‘jsonlite’ * installing *source* package ‘magrittr’ ... ** this is package ‘magrittr’ version ‘2.0.3’ ** package ‘magrittr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpiw3R5p/R.INSTALL3bb81a76036cac/magrittr/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pipe.c -o pipe.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o magrittr.so pipe.o utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpiw3R5p/R.INSTALL3bb81a76036cac/magrittr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-magrittr/00new/magrittr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magrittr) begin installing package ‘praise’ * installing *source* package ‘utf8’ ... ** this is package ‘utf8’ version ‘1.2.4’ ** package ‘utf8’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp84iEyX/R.INSTALL3ba6b7fa29739/utf8/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c as_utf8.c -o as_utf8.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c bytes.c -o bytes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c context.c -o context.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c render.c -o render.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c render_table.c -o render_table.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c string.c -o string.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c text.c -o text.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_encode.c -o utf8_encode.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_format.c -o utf8_format.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_normalize.c -o utf8_normalize.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_valid.c -o utf8_valid.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_width.c -o utf8_width.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c util.c -o util.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/array.c -o utf8lite/src/array.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/char.c -o utf8lite/src/char.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/encode.c -o utf8lite/src/encode.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/error.c -o utf8lite/src/error.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/escape.c -o utf8lite/src/escape.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/graph.c -o utf8lite/src/graph.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/render.c -o utf8lite/src/render.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/text.c -o utf8lite/src/text.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp84iEyX/R.INSTALL3ba6b7fa29739/utf8/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-utf8/00new/utf8/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (utf8) begin installing package ‘ps’ * installing *source* package ‘statmod’ ... ** this is package ‘statmod’ version ‘1.5.0’ ** package ‘statmod’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using Fortran compiler: ‘Debian flang-new version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyTgiz0/R.INSTALL3ba6b2614e8cd/statmod/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c expectedDeviance.c -o expectedDeviance.o flang-new-19 -fpic -g -O2 -c gaussq2.f -o gaussq2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o statmod.so expectedDeviance.o gaussq2.o init.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyTgiz0/R.INSTALL3ba6b2614e8cd/statmod/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-statmod/00new/statmod/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (statmod) begin installing package ‘R6’ * installing *source* package ‘evaluate’ ... ** this is package ‘evaluate’ version ‘1.0.3’ ** package ‘evaluate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (evaluate) begin installing package ‘withr’ * installing *source* package ‘praise’ ... ** this is package ‘praise’ version ‘1.0.0’ ** package ‘praise’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (praise) begin installing package ‘BiocGenerics’ * installing *source* package ‘brio’ ... ** this is package ‘brio’ version ‘1.1.5’ ** package ‘brio’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBJkuEk/R.INSTALL3bbfc340605654/brio/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c brio.c -o brio.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c file_line_endings.c -o file_line_endings.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_file.c -o read_file.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_file_raw.c -o read_file_raw.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_lines.c -o read_lines.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_file.c -o write_file.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_file_raw.c -o write_file_raw.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_lines.c -o write_lines.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_file_raw.o write_lines.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBJkuEk/R.INSTALL3bbfc340605654/brio/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-brio/00new/brio/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brio) begin installing package ‘ProtGenerics’ * installing *source* package ‘ncdf4’ ... ** this is package ‘ncdf4’ version ‘1.23’ ** package ‘ncdf4’ successfully unpacked and MD5 sums checked ** using staged installation configure.ac: starting checking for nc-config... yes Using nc-config: nc-config Output of nc-config --all: This netCDF 4.9.2 has been built with the following features: --cc -> /usr/bin/cc --cflags -> -I/usr/include -I/usr/include/hdf5/serial --libs -> -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf --static -> -lhdf5_hl -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lzstd -lxml2 --has-dap -> yes --has-dap2 -> yes --has-dap4 -> yes --has-nc2 -> yes --has-nc4 -> yes --has-hdf5 -> yes --has-hdf4 -> no --has-logging -> no --has-pnetcdf -> no --has-szlib -> no --has-cdf5 -> yes --has-parallel4 -> no --has-parallel -> no --has-nczarr -> yes --has-zstd -> yes --has-benchmarks -> no --has-multifilters -> no --has-stdfilters -> deflate szip zstd bz2 --has-quantize -> no --prefix -> /usr --includedir -> /usr/include --libdir -> /usr/lib/x86_64-linux-gnu --plugindir -> --version -> netCDF 4.9.2 --- netcdf.m4: about to set rpath, here is source string: >-L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf< netcdf.m4: final rpath: -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial Netcdf library version: netCDF 4.9.2 Netcdf library has version 4 interface present: yes Netcdf library was compiled with C compiler: /usr/bin/cc configure: creating ./config.status config.status: creating src/Makevars ********************** Results of ncdf4 package configure ******************* netCDF v4 CPP flags = -I/usr/include -I/usr/include/hdf5/serial netCDF v4 LD flags = -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-O1 netCDF v4 runtime path = -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial netCDF C compiler used = /usr/bin/cc R C compiler used = clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic ****************************************************************************** checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to accept ISO C89... none needed checking whether we are using the GNU C compiler... (cached) yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... (cached) yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to accept ISO C89... (cached) none needed netcdf cc arg1: /usr/bin/cc R cc arg1: clang-19 R_IS_GCC: 1 R_IS_CLANG: 1 NETCDF_IS_GCC: 1 NETCDF_IS_CLANG: 0 emit_warning: 0 ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpbq9fbd/R.INSTALL3ba6ea18e19d17/ncdf4/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ncdf.c -o ncdf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o ncdf4.so ncdf.o -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-O1 -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpbq9fbd/R.INSTALL3ba6ea18e19d17/ncdf4/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-ncdf4/00new/ncdf4/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ncdf4) begin installing package ‘MassSpecWavelet’ * installing *source* package ‘isoband’ ... ** this is package ‘isoband’ version ‘0.2.7’ ** package ‘isoband’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpyo4WQu/R.INSTALL3ba7024ea9efcc/isoband/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c clip-lines.cpp -o clip-lines.o clip-lines.cpp:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cpp -o init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c isoband.cpp -o isoband.o isoband.cpp:6:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 6 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c polygon.cpp -o polygon.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c separate-polygons.cpp -o separate-polygons.o separate-polygons.cpp:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c test-clip-lines.cpp -o test-clip-lines.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c test-runner.cpp -o test-runner.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c test-separate-polygons.cpp -o test-separate-polygons.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o isoband.so clip-lines.o init.o isoband.o polygon.o separate-polygons.o test-clip-lines.o test-runner.o test-separate-polygons.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpyo4WQu/R.INSTALL3ba7024ea9efcc/isoband/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-isoband/00new/isoband/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (isoband) begin installing package ‘impute’ * installing *source* package ‘fansi’ ... ** this is package ‘fansi’ version ‘1.0.6’ ** package ‘fansi’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMmE1hj/R.INSTALL3bb6333ac720ba/fansi/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c assumptions.c -o assumptions.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c carry.c -o carry.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c has.c -o has.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c nchar.c -o nchar.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c normalize.c -o normalize.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c read.c -o read.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rnchar.c -o rnchar.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c state.c -o state.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c strip.c -o strip.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c substr.c -o substr.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c tabs.c -o tabs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c tohtml.c -o tohtml.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c trimws.c -o trimws.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c unhandled.c -o unhandled.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c wrap.c -o wrap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c write.c -o write.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o fansi.so assumptions.o carry.o has.o init.o nchar.o normalize.o read.o rnchar.o state.o strip.o substr.o tabs.o tohtml.o trimws.o unhandled.o utf8.o utils.o wrap.o write.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMmE1hj/R.INSTALL3bb6333ac720ba/fansi/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-fansi/00new/fansi/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fansi) begin installing package ‘MALDIquant’ * installing *source* package ‘R6’ ... ** this is package ‘R6’ version ‘2.5.1’ ** package ‘R6’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R6) begin installing package ‘viridisLite’ * installing *source* package ‘withr’ ... ** this is package ‘withr’ version ‘3.0.2’ ** package ‘withr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (withr) begin installing package ‘base64enc’ * installing *source* package ‘DBI’ ... ** this is package ‘DBI’ version ‘1.2.3’ ** package ‘DBI’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DBI) begin installing package ‘lazyeval’ * installing *source* package ‘impute’ ... ** this is package ‘impute’ version ‘1.80.0’ ** package ‘impute’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘Debian flang-new version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7d4GCR/R.INSTALL3bc8bb59fd9122/impute/src' flang-new-19 -fpic -g -O2 -c knnimpute.f -o knnimpute.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o impute.so knnimpute.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7d4GCR/R.INSTALL3bc8bb59fd9122/impute/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-impute/00new/impute/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (impute) begin installing package ‘mime’ * installing *source* package ‘clue’ ... ** this is package ‘clue’ version ‘0.3-66’ ** package ‘clue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpV6TUfp/R.INSTALL3ba6ec61947784/clue/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c assignment.c -o assignment.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c clue.c -o clue.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lsap.c -o lsap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c trees.c -o trees.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o clue.so assignment.o clue.o init.o lsap.o trees.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpV6TUfp/R.INSTALL3ba6ec61947784/clue/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-clue/00new/clue/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clue) begin installing package ‘xtable’ * installing *source* package ‘viridisLite’ ... ** this is package ‘viridisLite’ version ‘0.4.2’ ** package ‘viridisLite’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (viridisLite) begin installing package ‘sourcetools’ * installing *source* package ‘preprocessCore’ ... ** this is package ‘preprocessCore’ version ‘1.68.0’ ** package ‘preprocessCore’ successfully unpacked and MD5 sums checked ** using staged installation 'config' variable 'CPP' is defunct checking for gcc... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to accept ISO C89... none needed checking how to run the C preprocessor... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -E checking for library containing pthread_create... none required checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking if PTHREAD_STACK_MIN is defined... yes checking if R is using flexiblas... flexiblas not found. preprocessCore threading will not be disabled configure: Enabling threading for preprocessCore configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpaOK5l6/R.INSTALL3ba6fc6e139f37/preprocessCore/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c R_colSummarize.c -o R_colSummarize.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c R_plmd_interfaces.c -o R_plmd_interfaces.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c R_plmr_interfaces.c -o R_plmr_interfaces.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c R_rlm_interfaces.c -o R_rlm_interfaces.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c R_subColSummarize.c -o R_subColSummarize.o R_subColSummarize.c:109:21: warning: unused variable 'buffer' [-Wunused-variable] 109 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:111:8: warning: unused variable 'cur_rows' [-Wunused-variable] 111 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:115:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 115 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:117:9: warning: unused variable 'j' [-Wunused-variable] 117 | int i,j; | ^ R_subColSummarize.c:282:21: warning: unused variable 'buffer' [-Wunused-variable] 282 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:284:8: warning: unused variable 'cur_rows' [-Wunused-variable] 284 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:288:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 288 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:290:9: warning: unused variable 'j' [-Wunused-variable] 290 | int i,j; | ^ R_subColSummarize.c:458:21: warning: unused variable 'buffer' [-Wunused-variable] 458 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:460:8: warning: unused variable 'cur_rows' [-Wunused-variable] 460 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:464:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 464 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:466:9: warning: unused variable 'j' [-Wunused-variable] 466 | int i,j; | ^ R_subColSummarize.c:635:21: warning: unused variable 'buffer' [-Wunused-variable] 635 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:637:8: warning: unused variable 'cur_rows' [-Wunused-variable] 637 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:641:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 641 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:643:9: warning: unused variable 'j' [-Wunused-variable] 643 | int i,j; | ^ R_subColSummarize.c:811:21: warning: unused variable 'buffer' [-Wunused-variable] 811 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:813:8: warning: unused variable 'cur_rows' [-Wunused-variable] 813 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:817:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 817 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:819:9: warning: unused variable 'j' [-Wunused-variable] 819 | int i,j; | ^ R_subColSummarize.c:988:21: warning: unused variable 'buffer' [-Wunused-variable] 988 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:990:8: warning: unused variable 'cur_rows' [-Wunused-variable] 990 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:994:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 994 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:996:9: warning: unused variable 'j' [-Wunused-variable] 996 | int i,j; | ^ R_subColSummarize.c:1163:21: warning: unused variable 'buffer' [-Wunused-variable] 1163 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:1165:8: warning: unused variable 'cur_rows' [-Wunused-variable] 1165 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:1169:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 1169 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:1171:9: warning: unused variable 'j' [-Wunused-variable] 1171 | int i,j; | ^ R_subColSummarize.c:1337:21: warning: unused variable 'buffer' [-Wunused-variable] 1337 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:1339:8: warning: unused variable 'cur_rows' [-Wunused-variable] 1339 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:1343:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 1343 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:1345:9: warning: unused variable 'j' [-Wunused-variable] 1345 | int i,j; | ^ R_subColSummarize.c:1516:21: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] 1516 | double *results, *buffer, *buffer2; | ^ R_subColSummarize.c:1516:30: warning: variable 'buffer2' set but not used [-Wunused-but-set-variable] 1516 | double *results, *buffer, *buffer2; | ^ R_subColSummarize.c:1518:8: warning: unused variable 'cur_rows' [-Wunused-variable] 1518 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:1522:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 1522 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:1524:9: warning: unused variable 'j' [-Wunused-variable] 1524 | int i,j; | ^ R_subColSummarize.c:1696:21: warning: unused variable 'buffer' [-Wunused-variable] 1696 | double *results, *buffer, *buffer2; | ^~~~~~ R_subColSummarize.c:1696:30: warning: unused variable 'buffer2' [-Wunused-variable] 1696 | double *results, *buffer, *buffer2; | ^~~~~~~ R_subColSummarize.c:1698:8: warning: unused variable 'cur_rows' [-Wunused-variable] 1698 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:1702:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 1702 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:1704:9: warning: unused variable 'j' [-Wunused-variable] 1704 | int i,j; | ^ R_subColSummarize.c:1660:14: warning: unused function 'subColSummarize_medianpolish_group' [-Wunused-function] 1660 | static void *subColSummarize_medianpolish_group(void *data){ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c R_subrcModel_interfaces.c -o R_subrcModel_interfaces.o R_subrcModel_interfaces.c:75:11: warning: unused variable 'buffer' [-Wunused-variable] 75 | double *buffer, *buffer2; | ^~~~~~ R_subrcModel_interfaces.c:75:20: warning: unused variable 'buffer2' [-Wunused-variable] 75 | double *buffer, *buffer2; | ^~~~~~~ R_subrcModel_interfaces.c:90:11: warning: unused variable 'weights' [-Wunused-variable] 90 | double *weights; | ^~~~~~~ R_subrcModel_interfaces.c:91:11: warning: unused variable 'se' [-Wunused-variable] 91 | double *se; | ^~ R_subrcModel_interfaces.c:165:11: warning: unused variable 'results' [-Wunused-variable] 165 | double *results, *buffer, *buffer2; | ^~~~~~~ R_subrcModel_interfaces.c:165:21: warning: unused variable 'buffer' [-Wunused-variable] 165 | double *results, *buffer, *buffer2; | ^~~~~~ R_subrcModel_interfaces.c:165:30: warning: unused variable 'buffer2' [-Wunused-variable] 165 | double *results, *buffer, *buffer2; | ^~~~~~~ R_subrcModel_interfaces.c:167:8: warning: unused variable 'cur_rows' [-Wunused-variable] 167 | int *cur_rows; | ^~~~~~~~ R_subrcModel_interfaces.c:171:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 171 | int ncur_rows; | ^~~~~~~~~ R_subrcModel_interfaces.c:173:9: warning: unused variable 'j' [-Wunused-variable] 173 | int i,j; | ^ R_subrcModel_interfaces.c:377:11: warning: unused variable 'buffer' [-Wunused-variable] 377 | double *buffer, *buffer2; | ^~~~~~ R_subrcModel_interfaces.c:377:20: warning: unused variable 'buffer2' [-Wunused-variable] 377 | double *buffer, *buffer2; | ^~~~~~~ R_subrcModel_interfaces.c:398:10: warning: unused variable 'scale' [-Wunused-variable] 398 | double scale=-1.0; | ^~~~~ R_subrcModel_interfaces.c:485:11: warning: unused variable 'results' [-Wunused-variable] 485 | double *results, *buffer, *buffer2; | ^~~~~~~ R_subrcModel_interfaces.c:485:21: warning: unused variable 'buffer' [-Wunused-variable] 485 | double *results, *buffer, *buffer2; | ^~~~~~ R_subrcModel_interfaces.c:485:30: warning: unused variable 'buffer2' [-Wunused-variable] 485 | double *results, *buffer, *buffer2; | ^~~~~~~ R_subrcModel_interfaces.c:487:8: warning: unused variable 'cur_rows' [-Wunused-variable] 487 | int *cur_rows; | ^~~~~~~~ R_subrcModel_interfaces.c:491:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 491 | int ncur_rows; | ^~~~~~~~~ R_subrcModel_interfaces.c:493:9: warning: unused variable 'j' [-Wunused-variable] 493 | int i,j; | ^ 19 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c avg.c -o avg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c avg_log.c -o avg_log.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c biweight.c -o biweight.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c init_package.c -o init_package.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c lm.c -o lm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c log_avg.c -o log_avg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c log_median.c -o log_median.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c matrix_functions.c -o matrix_functions.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c median.c -o median.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c median_log.c -o median_log.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c medianpolish.c -o medianpolish.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c plmd.c -o plmd.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c plmr.c -o plmr.o plmr.c:82:13: warning: unused function 'XTWY_R' [-Wunused-function] 82 | static void XTWY_R(int *rows, int *cols, double *out_weights, double *y,double *xtwy){ | ^~~~~~ plmr.c:152:13: warning: unused function 'XTWX_R' [-Wunused-function] 152 | static void XTWX_R(int *rows, int *cols, double *out_weights, double *xtwx){ | ^~~~~~ plmr.c:279:13: warning: unused function 'XTWX_R_inv' [-Wunused-function] 279 | static void XTWX_R_inv(int *rows, int *cols, double *xtwx){ | ^~~~~~~~~~ 3 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c psi_fns.c -o psi_fns.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c qnorm.c -o qnorm.o qnorm.c:596:9: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 595 | error("ERROR; return code from pthread_join(thread #%d) is %d, exit status for thread was %d\n", | ~~ | %zu 596 | i, returnCode, *((int *) status)); | ^ qnorm.c:617:9: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 616 | error("ERROR; return code from pthread_join(thread #%d) is %d, exit status for thread was %d\n", | ~~ | %zu 617 | i, returnCode, *((int *) status)); | ^ qnorm.c:2005:9: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 2004 | error("ERROR; return code from pthread_join(thread #%d) is %d, exit status for thread was %d\n", | ~~ | %zu 2005 | i, returnCode, *((int *) status)); | ^ qnorm.c:1905:12: warning: unused variable 'j' [-Wunused-variable] 1905 | size_t i,j,row_mean_ind; | ^ qnorm.c:1910:7: warning: unused variable 'non_na' [-Wunused-variable] 1910 | int non_na; | ^~~~~~ qnorm.c:2102:14: warning: variable 'target_rows' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 2102 | } else if (isMatrix(target)){ | ^~~~~~~~~~~~~~~~ /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:970:19: note: expanded from macro 'isMatrix' 970 | #define isMatrix Rf_isMatrix | ^ qnorm.c:2115:55: note: uninitialized use occurs here 2115 | qnorm_c_using_target_l(Xptr, rows, cols ,targetptr, target_rows); | ^~~~~~~~~~~ qnorm.c:2102:10: note: remove the 'if' if its condition is always true 2102 | } else if (isMatrix(target)){ | ^~~~~~~~~~~~~~~~~~~~~ qnorm.c:2083:21: note: initialize the variable 'target_rows' to silence this warning 2083 | size_t target_rows, target_cols; | ^ | = 0 qnorm.c:2605:9: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 2604 | error("ERROR; return code from pthread_join(thread #%d) is %d, exit status for thread was %d\n", | ~~ | %zu 2605 | i, returnCode, *((int *) status)); | ^ qnorm.c:2504:12: warning: unused variable 'j' [-Wunused-variable] 2504 | size_t i,j,row_mean_ind; | ^ qnorm.c:2509:7: warning: unused variable 'non_na' [-Wunused-variable] 2509 | int non_na; | ^~~~~~ qnorm.c:2725:14: warning: variable 'ind' set but not used [-Wunused-but-set-variable] 2725 | size_t i,j,ind,target_ind; | ^ qnorm.c:2823:11: warning: unused variable 'sample_percentiles' [-Wunused-variable] 2823 | double *sample_percentiles; | ^~~~~~~~~~~~~~~~~~ qnorm.c:2824:11: warning: unused variable 'datvec' [-Wunused-variable] 2824 | double *datvec; | ^~~~~~ qnorm.c:2957:12: warning: unused variable 'j' [-Wunused-variable] 2957 | size_t i,j,ind,target_ind; | ^ qnorm.c:2957:14: warning: unused variable 'ind' [-Wunused-variable] 2957 | size_t i,j,ind,target_ind; | ^~~ qnorm.c:2957:18: warning: unused variable 'target_ind' [-Wunused-variable] 2957 | size_t i,j,ind,target_ind; | ^~~~~~~~~~ qnorm.c:2959:14: warning: unused variable 'dimat' [-Wunused-variable] 2959 | dataitem **dimat; | ^~~~~ qnorm.c:2961:11: warning: unused variable 'row_mean' [-Wunused-variable] 2961 | double *row_mean = target; | ^~~~~~~~ qnorm.c:2963:11: warning: unused variable 'ranks' [-Wunused-variable] 2963 | double *ranks = (double *)R_Calloc((rows),double); | ^~~~~ qnorm.c:2964:10: warning: unused variable 'samplepercentile' [-Wunused-variable] 2964 | double samplepercentile; | ^~~~~~~~~~~~~~~~ qnorm.c:2965:10: warning: unused variable 'target_ind_double' [-Wunused-variable] 2965 | double target_ind_double,target_ind_double_floor; | ^~~~~~~~~~~~~~~~~ qnorm.c:2965:28: warning: unused variable 'target_ind_double_floor' [-Wunused-variable] 2965 | double target_ind_double,target_ind_double_floor; | ^~~~~~~~~~~~~~~~~~~~~~~ qnorm.c:2967:7: warning: unused variable 'targetnon_na' [-Wunused-variable] 2967 | int targetnon_na = targetrows; | ^~~~~~~~~~~~ qnorm.c:2968:7: warning: unused variable 'non_na' [-Wunused-variable] 2968 | int non_na = 0; | ^~~~~~ qnorm.c:2972:11: warning: unused variable 'sample_percentiles' [-Wunused-variable] 2972 | double *sample_percentiles; | ^~~~~~~~~~~~~~~~~~ qnorm.c:2973:11: warning: unused variable 'datvec' [-Wunused-variable] 2973 | double *datvec; | ^~~~~~ qnorm.c:3228:14: warning: variable 'target_rows' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 3228 | } else if (isMatrix(target)){ | ^~~~~~~~~~~~~~~~ /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:970:19: note: expanded from macro 'isMatrix' 970 | #define isMatrix Rf_isMatrix | ^ qnorm.c:3242:77: note: uninitialized use occurs here 3242 | qnorm_c_using_target_via_subset_l(Xptr, rows, cols, subsetptr, targetptr, target_rows); | ^~~~~~~~~~~ qnorm.c:3228:10: note: remove the 'if' if its condition is always true 3228 | } else if (isMatrix(target)){ | ^~~~~~~~~~~~~~~~~~~~~ qnorm.c:3209:21: note: initialize the variable 'target_rows' to silence this warning 3209 | size_t target_rows, target_cols; | ^ | = 0 26 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c rlm.c -o rlm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c rlm_anova.c -o rlm_anova.o rlm_anova.c:1235:10: warning: unused variable 'endprobe' [-Wunused-variable] 1235 | double endprobe; | ^~~~~~~~ rlm_anova.c:1414:10: warning: unused variable 'k1' [-Wunused-variable] 1414 | double k1 = psi_k; /* was 1.345; */ | ^~ rlm_anova.c:1415:10: warning: unused variable 'sumpsi2' [-Wunused-variable] 1415 | double sumpsi2=0.0; /* sum of psi(r_i)^2 */ | ^~~~~~~ rlm_anova.c:1417:10: warning: unused variable 'sumderivpsi' [-Wunused-variable] 1417 | double sumderivpsi=0.0; /* sum of psi'(r_i) */ | ^~~~~~~~~~~ rlm_anova.c:1418:10: warning: unused variable 'Kappa' [-Wunused-variable] 1418 | double Kappa=0.0; /* A correction factor */ | ^~~~~ rlm_anova.c:1419:10: warning: unused variable 'scale' [-Wunused-variable] 1419 | double scale=0.0; | ^~~~~ rlm_anova.c:1426:10: warning: unused variable 'vs' [-Wunused-variable] 1426 | double vs=0.0,m,varderivpsi=0.0; | ^~ rlm_anova.c:1426:17: warning: unused variable 'm' [-Wunused-variable] 1426 | double vs=0.0,m,varderivpsi=0.0; | ^ rlm_anova.c:1426:19: warning: unused variable 'varderivpsi' [-Wunused-variable] 1426 | double vs=0.0,m,varderivpsi=0.0; | ^~~~~~~~~~~ rlm_anova.c:1505:10: warning: unused variable 'endprobe' [-Wunused-variable] 1505 | double endprobe; | ^~~~~~~~ 10 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c rlm_se.c -o rlm_se.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c rma_background4.c -o rma_background4.o rma_background4.c:354:10: warning: unused variable 'j' [-Wunused-variable] 354 | size_t j; | ^ rma_background4.c:355:10: warning: unused variable 'param' [-Wunused-variable] 355 | double param[3]; | ^~~~~ 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c rma_common.c -o rma_common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c weightedkerneldensity.c -o weightedkerneldensity.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o preprocessCore.so R_colSummarize.o R_plmd_interfaces.o R_plmr_interfaces.o R_rlm_interfaces.o R_subColSummarize.o R_subrcModel_interfaces.o avg.o avg_log.o biweight.o init_package.o lm.o log_avg.o log_median.o matrix_functions.o median.o median_log.o medianpolish.o plmd.o plmr.o psi_fns.o qnorm.o rlm.o rlm_anova.o rlm_se.o rma_background4.o rma_common.o weightedkerneldensity.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpaOK5l6/R.INSTALL3ba6fc6e139f37/preprocessCore/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-preprocessCore/00new/preprocessCore/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (preprocessCore) begin installing package ‘crayon’ * installing *source* package ‘jsonlite’ ... ** this is package ‘jsonlite’ version ‘1.8.9’ ** package ‘jsonlite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpx5KOP0/R.INSTALL3bc02d79140d10/jsonlite/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_array.c -o collapse_array.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_object.c -o collapse_object.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_pretty.c -o collapse_pretty.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c escape_chars.c -o escape_chars.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c integer64_to_na.c -o integer64_to_na.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_datelist.c -o is_datelist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_recordlist.c -o is_recordlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_scalarlist.c -o is_scalarlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c modp_numtoa.c -o modp_numtoa.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c null_to_na.c -o null_to_na.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c num_to_char.c -o num_to_char.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c parse.c -o parse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c prettify.c -o prettify.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c push_parser.c -o push_parser.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c r-base64.c -o r-base64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c register.c -o register.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c row_collapse.c -o row_collapse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c transpose_list.c -o transpose_list.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c validate.c -o validate.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl.c -o yajl/yajl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_buf.c -o yajl/yajl_buf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_encode.c -o yajl/yajl_encode.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_gen.c -o yajl/yajl_gen.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_lex.c -o yajl/yajl_lex.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_parser.c -o yajl/yajl_parser.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_tree.c -o yajl/yajl_tree.o ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx5KOP0/R.INSTALL3bc02d79140d10/jsonlite/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-jsonlite/00new/jsonlite/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘asJSON’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘asJSON’ with signature ‘"ITime"’: no definition for class “ITime” in method for ‘asJSON’ with signature ‘"hms"’: no definition for class “hms” in method for ‘asJSON’ with signature ‘"json"’: no definition for class “json” in method for ‘asJSON’ with signature ‘"integer64"’: no definition for class “integer64” in method for ‘asJSON’ with signature ‘"pairlist"’: no definition for class “pairlist” in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” in method for ‘asJSON’ with signature ‘"scalar"’: no definition for class “scalar” in method for ‘asJSON’ with signature ‘"sf"’: no definition for class “sf” in method for ‘asJSON’ with signature ‘"sfc"’: no definition for class “sfc” in method for ‘asJSON’ with signature ‘"vctrs_vctr"’: no definition for class “vctrs_vctr” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jsonlite) begin installing package ‘fastmap’ * installing *source* package ‘MassSpecWavelet’ ... ** this is package ‘MassSpecWavelet’ version ‘1.72.1’ ** package ‘MassSpecWavelet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplPgNjP/R.INSTALL3bc7febdbfa04/MassSpecWavelet/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c find_local_maximum.c -o find_local_maximum.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o MassSpecWavelet.so find_local_maximum.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplPgNjP/R.INSTALL3bc7febdbfa04/MassSpecWavelet/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-MassSpecWavelet/00new/MassSpecWavelet/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MassSpecWavelet) begin installing package ‘commonmark’ * installing *source* package ‘ProtGenerics’ ... ** this is package ‘ProtGenerics’ version ‘1.38.0’ ** package ‘ProtGenerics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘smooth’ in package ‘ProtGenerics’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ProtGenerics) begin installing package ‘glue’ * installing *source* package ‘base64enc’ ... ** this is package ‘base64enc’ version ‘0.1-3’ ** package ‘base64enc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3SZ1wS/R.INSTALL3bd25950d1e16b/base64enc/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c uriencode.c -o uriencode.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o base64enc.so base64.o uriencode.o utf8.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3SZ1wS/R.INSTALL3bd25950d1e16b/base64enc/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-base64enc/00new/base64enc/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (base64enc) begin installing package ‘RColorBrewer’ * installing *source* package ‘mime’ ... ** this is package ‘mime’ version ‘0.12’ ** package ‘mime’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2IWnpt/R.INSTALL3bd367223cbea3/mime/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rawmatch.c -o rawmatch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o mime.so init.o rawmatch.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2IWnpt/R.INSTALL3bd367223cbea3/mime/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-mime/00new/mime/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mime) begin installing package ‘data.table’ * installing *source* package ‘xfun’ ... ** this is package ‘xfun’ version ‘0.50’ ** package ‘xfun’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVzWNVI/R.INSTALL3bbe0a59f1df2e/xfun/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o xfun.so base64.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVzWNVI/R.INSTALL3bbe0a59f1df2e/xfun/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-xfun/00new/xfun/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xfun) begin installing package ‘askpass’ * installing *source* package ‘ps’ ... ** this is package ‘ps’ version ‘1.8.1’ ** package ‘ps’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpzx4kXD/R.INSTALL3bc040239c89cb/ps/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 -Wall px.c -o px clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api-common.c -o api-common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c common.c -o common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c extra.c -o extra.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dummy.c -o dummy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c error-codes.c -o error-codes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c posix.c -o posix.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api-posix.c -o api-posix.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c linux.c -o linux.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api-linux.c -o api-linux.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o cleancall.o posix.o api-posix.o linux.o api-linux.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpzx4kXD/R.INSTALL3bc040239c89cb/ps/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-ps/00new/ps ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ps) begin installing package ‘lambda.r’ * installing *source* package ‘lazyeval’ ... ** this is package ‘lazyeval’ version ‘0.2.2’ ** package ‘lazyeval’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpaB0hZs/R.INSTALL3bd271764c9c1f/lazyeval/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c expr.c -o expr.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c interp.c -o interp.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lazy.c -o lazy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c name.c -o name.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpaB0hZs/R.INSTALL3bd271764c9c1f/lazyeval/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-lazyeval/00new/lazyeval/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lazyeval) begin installing package ‘limma’ * installing *source* package ‘colorspace’ ... ** this is package ‘colorspace’ version ‘2.1-1’ ** package ‘colorspace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpF3E7UB/R.INSTALL3ba6a324dac114/colorspace/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colorspace.c -o colorspace.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o colorspace.so colorspace.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpF3E7UB/R.INSTALL3ba6a324dac114/colorspace/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-colorspace/00new/colorspace/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colorspace) begin installing package ‘affyio’ * installing *source* package ‘sourcetools’ ... ** this is package ‘sourcetools’ version ‘0.1.7-1’ ** package ‘sourcetools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpH1nQBu/R.INSTALL3bd45d4416c43f/sourcetools/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c Reader.cpp -o Reader.o In file included from Reader.cpp:3: In file included from ../inst/include/sourcetools/read/read.h:7: In file included from ../inst/include/sourcetools/read/MemoryMappedReader.h:10: ../inst/include/sourcetools/r/RHeaders.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c Tokenizer.cpp -o Tokenizer.o In file included from Tokenizer.cpp:1: In file included from ../inst/include/sourcetools.h:9: In file included from ../inst/include/sourcetools/read/read.h:7: In file included from ../inst/include/sourcetools/read/MemoryMappedReader.h:10: ../inst/include/sourcetools/r/RHeaders.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sourcetools-init.c -o sourcetools-init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sourcetools.so Reader.o Tokenizer.o sourcetools-init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpH1nQBu/R.INSTALL3bd45d4416c43f/sourcetools/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sourcetools/00new/sourcetools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sourcetools) begin installing package ‘foreach’ * installing *source* package ‘RColorBrewer’ ... ** this is package ‘RColorBrewer’ version ‘1.1-3’ ** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RColorBrewer) begin installing package ‘highr’ * installing *source* package ‘xtable’ ... ** this is package ‘xtable’ version ‘1.8-4’ ** package ‘xtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xtable) begin installing package ‘processx’ * installing *source* package ‘BiocGenerics’ ... ** this is package ‘BiocGenerics’ version ‘0.52.0’ ** package ‘BiocGenerics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘aperm’ in package ‘BiocGenerics’ Creating a new generic function for ‘append’ in package ‘BiocGenerics’ Creating a new generic function for ‘as.data.frame’ in package ‘BiocGenerics’ Creating a new generic function for ‘cbind’ in package ‘BiocGenerics’ Creating a new generic function for ‘rbind’ in package ‘BiocGenerics’ Creating a new generic function for ‘do.call’ in package ‘BiocGenerics’ Creating a new generic function for ‘duplicated’ in package ‘BiocGenerics’ Creating a new generic function for ‘anyDuplicated’ in package ‘BiocGenerics’ Creating a new generic function for ‘eval’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmax’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmin’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmax.int’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmin.int’ in package ‘BiocGenerics’ Creating a new generic function for ‘Reduce’ in package ‘BiocGenerics’ Creating a new generic function for ‘Filter’ in package ‘BiocGenerics’ Creating a new generic function for ‘Find’ in package ‘BiocGenerics’ Creating a new generic function for ‘Map’ in package ‘BiocGenerics’ Creating a new generic function for ‘Position’ in package ‘BiocGenerics’ Creating a new generic function for ‘get’ in package ‘BiocGenerics’ Creating a new generic function for ‘mget’ in package ‘BiocGenerics’ Creating a new generic function for ‘grep’ in package ‘BiocGenerics’ Creating a new generic function for ‘grepl’ in package ‘BiocGenerics’ Creating a new generic function for ‘is.unsorted’ in package ‘BiocGenerics’ Creating a new generic function for ‘lapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘sapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘mapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘match’ in package ‘BiocGenerics’ Creating a new generic function for ‘order’ in package ‘BiocGenerics’ Creating a new generic function for ‘paste’ in package ‘BiocGenerics’ Creating a new generic function for ‘rank’ in package ‘BiocGenerics’ Creating a new generic function for ‘rownames’ in package ‘BiocGenerics’ Creating a new generic function for ‘colnames’ in package ‘BiocGenerics’ Creating a new generic function for ‘saveRDS’ in package ‘BiocGenerics’ Creating a new generic function for ‘union’ in package ‘BiocGenerics’ Creating a new generic function for ‘intersect’ in package ‘BiocGenerics’ Creating a new generic function for ‘setdiff’ in package ‘BiocGenerics’ Creating a new generic function for ‘table’ in package ‘BiocGenerics’ Creating a new generic function for ‘tapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘unique’ in package ‘BiocGenerics’ Creating a new generic function for ‘unsplit’ in package ‘BiocGenerics’ Creating a new generic function for ‘var’ in package ‘BiocGenerics’ Creating a new generic function for ‘sd’ in package ‘BiocGenerics’ Creating a new generic function for ‘which.min’ in package ‘BiocGenerics’ Creating a new generic function for ‘which.max’ in package ‘BiocGenerics’ Creating a new generic function for ‘IQR’ in package ‘BiocGenerics’ Creating a new generic function for ‘mad’ in package ‘BiocGenerics’ Creating a new generic function for ‘xtabs’ in package ‘BiocGenerics’ Creating a new generic function for ‘basename’ in package ‘BiocGenerics’ Creating a new generic function for ‘dirname’ in package ‘BiocGenerics’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocGenerics) begin installing package ‘tinytex’ * installing *source* package ‘crayon’ ... ** this is package ‘crayon’ version ‘1.5.3’ ** package ‘crayon’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crayon) begin installing package ‘munsell’ * installing *source* package ‘glue’ ... ** this is package ‘glue’ version ‘1.8.0’ ** package ‘glue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8HVxGN/R.INSTALL3bd67654d91388/glue/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c glue.c -o glue.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c trim.c -o trim.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o glue.so glue.o init.o trim.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8HVxGN/R.INSTALL3bd67654d91388/glue/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-glue/00new/glue/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glue) begin installing package ‘diffobj’ * installing *source* package ‘askpass’ ... ** this is package ‘askpass’ version ‘1.2.1’ ** package ‘askpass’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTKpxXW/R.INSTALL3bd8ae5b8207b1/askpass/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c askpass.c -o askpass.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o askpass.so askpass.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTKpxXW/R.INSTALL3bd8ae5b8207b1/askpass/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-askpass/00new/askpass/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (askpass) begin installing package ‘Biobase’ * installing *source* package ‘fastmap’ ... ** this is package ‘fastmap’ version ‘1.2.0’ ** package ‘fastmap’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpf0o5SE/R.INSTALL3bd5874f487ab8/fastmap/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Ilib/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c fastmap.cpp -o fastmap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Ilib/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o fastmap.so fastmap.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpf0o5SE/R.INSTALL3bd5874f487ab8/fastmap/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-fastmap/00new/fastmap/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastmap) begin installing package ‘S4Vectors’ * installing *source* package ‘highr’ ... ** this is package ‘highr’ version ‘0.11’ ** package ‘highr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (highr) begin installing package ‘openssl’ * installing *source* package ‘lambda.r’ ... ** this is package ‘lambda.r’ version ‘1.2.4’ ** package ‘lambda.r’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lambda.r) begin installing package ‘futile.logger’ * installing *source* package ‘foreach’ ... ** this is package ‘foreach’ version ‘1.5.2’ ** package ‘foreach’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (foreach) begin installing package ‘doParallel’ * installing *source* package ‘MALDIquant’ ... ** this is package ‘MALDIquant’ version ‘1.22.3’ ** package ‘MALDIquant’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvcTBsa/R.INSTALL3bcb4b21138ffd/MALDIquant/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colMedians.c -o colMedians.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c localMaxima.c -o localMaxima.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lowerConvexHull.c -o lowerConvexHull.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c morphologicalFilters.c -o morphologicalFilters.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c snip.c -o snip.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o MALDIquant.so colMedians.o init.o localMaxima.o lowerConvexHull.o morphologicalFilters.o snip.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvcTBsa/R.INSTALL3bcb4b21138ffd/MALDIquant/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-MALDIquant/00new/MALDIquant/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘approxfun’ from package ‘stats’ in package ‘MALDIquant’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MALDIquant) * installing *source* package ‘tinytex’ ... ** this is package ‘tinytex’ version ‘0.54’ ** package ‘tinytex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinytex) * installing *source* package ‘munsell’ ... ** this is package ‘munsell’ version ‘0.5.1’ ** package ‘munsell’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (munsell) * installing *source* package ‘yaml’ ... ** this is package ‘yaml’ version ‘2.3.10’ ** package ‘yaml’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3EZ7wV/R.INSTALL3bbf394c0e1b5f/yaml/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api.c -o api.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dumper.c -o dumper.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c emitter.c -o emitter.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c implicit.c -o implicit.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c loader.c -o loader.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c parser.c -o parser.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c r_emit.c -o r_emit.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c r_ext.c -o r_ext.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c r_parse.c -o r_parse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reader.c -o reader.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c scanner.c -o scanner.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c writer.c -o writer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3EZ7wV/R.INSTALL3bbf394c0e1b5f/yaml/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-yaml/00new/yaml/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yaml) begin installing package ‘knitr’ * installing *source* package ‘matrixStats’ ... ** this is package ‘matrixStats’ version ‘1.5.0’ ** package ‘matrixStats’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8z8RKO/R.INSTALL3ba6d011b9b822/matrixStats/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c 000.init.c -o 000.init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c allocMatrix2.c -o allocMatrix2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c anyMissing.c -o anyMissing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c binCounts.c -o binCounts.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c binMeans.c -o binMeans.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colCounts.c -o colCounts.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colOrderStats.c -o colOrderStats.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colRanges.c -o colRanges.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diff2.c -o diff2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c indexByRow.c -o indexByRow.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c logSumExp.c -o logSumExp.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mean2.c -o mean2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c naming.c -o naming.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c productExpSumLog.c -o productExpSumLog.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c psortKM.c -o psortKM.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCounts.c -o rowCounts.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCummaxs.c -o rowCummaxs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCummins.c -o rowCummins.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCumprods.c -o rowCumprods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCumsums.c -o rowCumsums.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowDiffs.c -o rowDiffs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowLogSumExp.c -o rowLogSumExp.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMads.c -o rowMads.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMeans2.c -o rowMeans2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMedians.c -o rowMedians.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowOrderStats.c -o rowOrderStats.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowRanges.c -o rowRanges.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowRanksWithTies.c -o rowRanksWithTies.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowSums2.c -o rowSums2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowVars.c -o rowVars.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c signTabulate.c -o signTabulate.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sum2.c -o sum2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c validateIndices.c -o validateIndices.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c weightedMean.c -o weightedMean.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c weightedMedian.c -o weightedMedian.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c x_OP_y.c -o x_OP_y.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o naming.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8z8RKO/R.INSTALL3ba6d011b9b822/matrixStats/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-matrixStats/00new/matrixStats/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matrixStats) begin installing package ‘MatrixGenerics’ * installing *source* package ‘digest’ ... ** this is package ‘digest’ version ‘0.6.37’ ** package ‘digest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp189ELQ/R.INSTALL3bbfcb76d27f1e/digest/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c SpookyV2.cpp -o SpookyV2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c aes.c -o aes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3.c -o blake3.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3_dispatch.c -o blake3_dispatch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3_portable.c -o blake3_portable.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c crc32.c -o crc32.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c crc32c.cpp -o crc32c.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c crc32c_portable.cpp -o crc32c_portable.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c digest.c -o digest.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c digest2int.c -o digest2int.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pmurhash.c -o pmurhash.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raes.c -o raes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha1.c -o sha1.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha2.c -o sha2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha256.c -o sha256.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c spooky_serialize.cpp -o spooky_serialize.o spooky_serialize.cpp:25:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 25 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c xxhash.c -o xxhash.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o crc32c.o crc32c_portable.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp189ELQ/R.INSTALL3bbfcb76d27f1e/digest/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-digest/00new/digest/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (digest) * installing *source* package ‘doParallel’ ... ** this is package ‘doParallel’ version ‘1.0.17’ ** package ‘doParallel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (doParallel) * installing *source* package ‘futile.logger’ ... ** this is package ‘futile.logger’ version ‘1.4.3’ ** package ‘futile.logger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (futile.logger) * installing *source* package ‘commonmark’ ... ** this is package ‘commonmark’ version ‘1.9.2’ ** package ‘commonmark’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpy9F8Tz/R.INSTALL3bd5cc5644e38b/commonmark/src' rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions.c -o extensions.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c wrapper.c -o wrapper.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/cmark.c -o cmark/cmark.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/node.c -o cmark/node.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/iterator.c -o cmark/iterator.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/blocks.c -o cmark/blocks.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/inlines.c -o cmark/inlines.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/scanners.c -o cmark/scanners.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/utf8.c -o cmark/utf8.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/buffer.c -o cmark/buffer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/references.c -o cmark/references.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/render.c -o cmark/render.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/man.c -o cmark/man.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/xml.c -o cmark/xml.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/html.c -o cmark/html.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/commonmark.c -o cmark/commonmark.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/latex.c -o cmark/latex.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/arena.c -o cmark/arena.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/linked_list.c -o cmark/linked_list.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/plugin.c -o cmark/plugin.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/registry.c -o cmark/registry.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/syntax_extension.c -o cmark/syntax_extension.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/plaintext.c -o cmark/plaintext.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/footnotes.c -o cmark/footnotes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/map.c -o cmark/map.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/autolink.c -o extensions/autolink.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/core-extensions.c -o extensions/core-extensions.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/ext_scanners.c -o extensions/ext_scanners.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/strikethrough.c -o extensions/strikethrough.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/table.c -o extensions/table.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/tagfilter.c -o extensions/tagfilter.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/tasklist.c -o extensions/tasklist.o ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpy9F8Tz/R.INSTALL3bd5cc5644e38b/commonmark/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-commonmark/00new/commonmark/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (commonmark) * installing *source* package ‘cli’ ... ** this is package ‘cli’ version ‘3.6.3’ ** package ‘cli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQjHb8i/R.INSTALL3bb78b242f1bec/cli/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c ansi.c -o ansi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c diff.c -o diff.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c errors.c -o errors.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c glue.c -o glue.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c inst.c -o inst.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress-unix.c -o keypress-unix.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress-win.c -o keypress-win.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress.c -o keypress.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c progress-altrep.c -o progress-altrep.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c progress.c -o progress.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c sha1.c -o sha1.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c sha256.c -o sha256.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c thread.c -o thread.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c tty.c -o tty.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vt.c -o vt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vtparse.c -o vtparse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vtparse_table.c -o vtparse_table.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c win-utf8.c -o win-utf8.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c winfiles.c -o winfiles.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o cli.so ansi.o cleancall.o diff.o errors.o glue.o init.o inst.o keypress-unix.o keypress-win.o keypress.o md5.o progress-altrep.o progress.o sha1.o sha256.o thread.o tty.o utf8.o utils.o vt.o vtparse.o vtparse_table.o win-utf8.o winfiles.o -lpthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQjHb8i/R.INSTALL3bb78b242f1bec/cli/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-cli/00new/cli/libs ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cli) begin installing package ‘desc’ * installing *source* package ‘XML’ ... ** this is package ‘XML’ version ‘3.99-0.18’ ** package ‘XML’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to enable C11 features... none needed checking how to run the C preprocessor... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -E checking for sed... /usr/bin/sed checking for pkg-config... /usr/bin/pkg-config checking for xml2-config... /usr/bin/xml2-config USE_XML2 = yes SED_EXTENDED_ARG: -E Minor 9, Patch 14 for 2.9.14 Located parser file -I/usr/include/libxml2/parser.h Checking for 1.8: -I/usr/include/libxml2 Using libxml2.* checking for gzopen in -lz... yes checking for xmlParseFile in -lxml2... yes checking for xmlHashSize in -lxml2... yes Using built-in xmlHashSize Checking DTD parsing (presence of externalSubset)... checking for xmlHashSize in -lxml2... (cached) yes Found xmlHashSize checking for xmlOutputBufferCreateBuffer in -lxml2... yes have xmlOutputBufferCreateBuffer() checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes checking for libxml/xmlversion.h... yes Expat: FALSE Checking for return type of xmlHashScan element routine. No return value for xmlHashScan xmlNs has a context field Checking for cetype_t enumeration Using recent version of R with cetype_t enumeration type for encoding checking for xmlsec1-config... no nodegc default xml-debug default Version has XML_WITH_ZLIB Version has xmlHasFeature() **************************************** Configuration information: Libxml settings libxml include directory: -I/usr/include/libxml2 libxml library directory: -lxml2 -lz -lxml2 libxml 2: -DLIBXML2=1 Compilation flags: -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 Link flags: -lxml2 -lz -lxml2 **************************************** configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/supports.R config.status: creating inst/scripts/RSXML.csh config.status: creating inst/scripts/RSXML.bsh ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0RZY78/R.INSTALL3ba6ff120a9681/XML/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c DocParse.c -o DocParse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c EventParse.c -o EventParse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ExpatParse.c -o ExpatParse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c HTMLParse.c -o HTMLParse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c NodeGC.c -o NodeGC.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RSDTD.c -o RSDTD.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RUtils.c -o RUtils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rcatalog.c -o Rcatalog.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Utils.c -o Utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XMLEventParse.c -o XMLEventParse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XMLHashTree.c -o XMLHashTree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XMLTree.c -o XMLTree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fixNS.c -o fixNS.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libxmlFeatures.c -o libxmlFeatures.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c schema.c -o schema.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c xmlsecurity.c -o xmlsecurity.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c xpath.c -o xpath.o xpath.c:255:15: warning: assigning to 'xmlXPathFunction' (aka 'void (*)(struct _xmlXPathParserContext *, int)') from 'void *' converts between void pointer and function pointer [-Wpedantic] 255 | routine = R_ExternalPtrAddr(el); | ^ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -lxml2 -lz -lxml2 -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0RZY78/R.INSTALL3ba6ff120a9681/XML/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-XML/00new/XML/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘source’ from package ‘base’ in package ‘XML’ in method for ‘xmlAttrsToDataFrame’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘readKeyValueDB’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘readSolrDoc’ with signature ‘"AsIs"’: no definition for class “AsIs” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (XML) * installing *source* package ‘processx’ ... ** this is package ‘processx’ version ‘3.8.5’ ** package ‘processx’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpe3nZoi/R.INSTALL3bdc3741df822e/processx/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 -Wall tools/px.c -o tools/px clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 -I../inst/include -Wall tools/sock.c -o tools/sock clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 supervisor/supervisor.c \ supervisor/utils.c -o supervisor/supervisor clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c client.c -o client.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c errors.c -o errors.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L"/home/hornik/tmp/R-d-clang-xtra/lib" -Wl,-O1 -o client.so base64.o client.o errors.o \ -L"/home/hornik/tmp/R-d-clang-xtra/lib" -lR clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c poll.c -o poll.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c processx-connection.c -o processx-connection.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c processx-vector.c -o processx-vector.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c create-time.c -o create-time.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/childlist.c -o unix/childlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/connection.c -o unix/connection.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/processx.c -o unix/processx.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/sigchld.c -o unix/sigchld.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/utils.c -o unix/utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/named_pipe.c -o unix/named_pipe.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpe3nZoi/R.INSTALL3bdc3741df822e/processx/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-processx/00new/processx ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (processx) begin installing package ‘callr’ * installing *source* package ‘rlang’ ... ** this is package ‘rlang’ version ‘1.1.4’ ** package ‘rlang’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8DdqTQ/R.INSTALL3bb8e71b10d6f9/rlang/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c capture.c -o capture.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c internal.c -o internal.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang.c -o rlang.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o rlang.so capture.o internal.o rlang.o version.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8DdqTQ/R.INSTALL3bb8e71b10d6f9/rlang/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-rlang/00new/rlang/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlang) begin installing package ‘lifecycle’ begin installing package ‘htmltools’ begin installing package ‘cachem’ * installing *source* package ‘affyio’ ... ** this is package ‘affyio’ version ‘1.76.0’ ** package ‘affyio’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to accept ISO C89... none needed checking how to run the C preprocessor... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for main in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes checking for pthread_create in -lpthread... yes checking if we can use pthreads... yes checking if PTHREAD_STACK_MIN is defined... yes configure: Enabling threading for affyio configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2gXISb/R.INSTALL3bd9bd7f807215/affyio/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c fread_functions.c -o fread_functions.o fread_functions.c:728:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 728 | void test_parsers_le(){ | ^ | void fread_functions.c:801:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 801 | void test_parsers_be(){ | ^ | void 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c init_package.c -o init_package.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_abatch.c -o read_abatch.o read_abatch.c:656:207: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 656 | Rprintf("Warning: found an empty line where not expected in %s.\nThis means that there is a cel intensity missing from the cel file.\nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~~ ^~~ | %zu read_abatch.c:656:212: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 656 | Rprintf("Warning: found an empty line where not expected in %s.\nThis means that there is a cel intensity missing from the cel file.\nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~~ ^ | %zu read_abatch.c:665:177: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:665:182: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:677:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:677:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:689:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:689:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:764:209: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 764 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~~ ^~~ | %zu read_abatch.c:764:214: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 764 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~~ ^ | %zu read_abatch.c:774:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 774 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:774:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 774 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:785:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 785 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:785:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 785 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:795:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 795 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:795:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 795 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:805:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 805 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:805:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 805 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:870:209: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 870 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~~ ^~~ | %zu read_abatch.c:870:214: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 870 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~~ ^ | %zu read_abatch.c:879:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 879 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:879:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 879 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:890:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 890 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:890:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 890 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:901:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 901 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:901:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 901 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:913:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 913 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:913:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 913 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:924:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 924 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:924:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 924 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1567:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1567 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1567:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1567 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1578:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1578 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1578:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1578 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1589:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1589 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1589:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1589 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1665:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1665:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1677:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1677:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1689:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1689:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1701:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1701 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1701:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1701 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1769:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1769 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1769:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1769 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1780:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1780 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1780:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1780 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1791:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1791 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1791:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1791 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1801:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1801 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1801:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1801 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1811:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1811 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1811:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1811 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu 54 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_bpmap.c -o read_bpmap.o read_bpmap.c:849:42: warning: format specifies type 'char *' but the argument has type 'SEXP' (aka 'struct SEXPREC *') [-Wformat] 849 | error("Unable to open the file %s",filename); | ~~ ^~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_cdf_xda.c -o read_cdf_xda.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_cdffile2.c -o read_cdffile2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_celfile_generic.c -o read_celfile_generic.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_clf.c -o read_clf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_generic.c -o read_generic.o read_generic.c:1293:42: warning: format specifies type 'double' but the argument has type 'int' [-Wformat] 1293 | Rprintf("Its a float value is %f\n",temp32); | ~~ ^~~~~~ | %d read_generic.c:1293:42: warning: variable 'temp32' is uninitialized when used here [-Wuninitialized] 1293 | Rprintf("Its a float value is %f\n",temp32); | ^~~~~~ read_generic.c:1283:13: note: initialize the variable 'temp32' to silence this warning 1283 | int temp32; | ^ | = 0 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_multichannel_celfile_generic.c -o read_multichannel_celfile_generic.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_pgf.c -o read_pgf.o read_pgf.c:363:12: warning: unused function 'token_ends_with' [-Wunused-function] 363 | static int token_ends_with(char *token, char *ends_in){ | ^~~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o affyio.so fread_functions.o init_package.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_multichannel_celfile_generic.o read_pgf.o -lpthread -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2gXISb/R.INSTALL3bd9bd7f807215/affyio/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-affyio/00new/affyio/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affyio) * installing *source* package ‘openssl’ ... ** this is package ‘openssl’ version ‘2.3.1’ ** package ‘openssl’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-l:libssl.so.3 -l:libcrypto.so.3 ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkQ0f71/R.INSTALL3be26d3d1e7604/openssl/src' rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c aes.c -o aes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bignum.c -o bignum.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cert.c -o cert.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c compatibility.c -o compatibility.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diffie.c -o diffie.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c envelope.c -o envelope.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c error.c -o error.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hash.c -o hash.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c info.c -o info.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c keygen.c -o keygen.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c keys.c -o keys.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c onload.c -o onload.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c openssh.c -o openssh.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c password.c -o password.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pbkdf.c -o pbkdf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pem.c -o pem.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pkcs12.c -o pkcs12.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pkcs7.c -o pkcs7.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rand.c -o rand.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rsa.c -o rsa.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c signing.c -o signing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ssl.c -o ssl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stream.c -o stream.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write.c -o write.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c x25519.c -o x25519.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bcrypt/blowfish.c -o bcrypt/blowfish.o ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.3 -l:libcrypto.so.3 -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkQ0f71/R.INSTALL3be26d3d1e7604/openssl/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-openssl/00new/openssl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (openssl) begin installing package ‘httr’ * installing *source* package ‘MatrixGenerics’ ... ** this is package ‘MatrixGenerics’ version ‘1.18.0’ ** package ‘MatrixGenerics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘rowAlls’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colAlls’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowAnyNAs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colAnyNAs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowAnys’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colAnys’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowAvgsPerColSet’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colAvgsPerRowSet’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCollapse’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCollapse’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCounts’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCounts’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCummaxs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCummaxs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCummins’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCummins’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCumprods’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCumprods’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCumsums’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCumsums’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowIQRDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colIQRDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowIQRs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colIQRs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowLogSumExps’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colLogSumExps’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMadDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMadDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMads’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMads’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMaxs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMaxs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMeans2’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMeans2’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMedians’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMedians’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMins’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMins’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowOrderStats’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colOrderStats’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowProds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colProds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowQuantiles’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colQuantiles’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowRanges’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colRanges’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowRanks’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colRanks’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowSdDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colSdDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowSds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colSds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowSums2’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colSums2’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowTabulates’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colTabulates’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowVarDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colVarDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowVars’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colVars’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedMads’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedMads’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedMeans’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedMeans’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedMedians’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedMedians’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedSds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedSds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedVars’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedVars’ in package ‘MatrixGenerics’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatrixGenerics) * installing *source* package ‘desc’ ... ** this is package ‘desc’ version ‘1.4.3’ ** package ‘desc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (desc) * installing *source* package ‘fs’ ... ** this is package ‘fs’ version ‘1.6.5’ ** package ‘fs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWa2eNs/R.INSTALL3ba6e87d6b29fc/fs/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c dir.cc -o dir.o In file included from dir.cc:6: ./getmode.h:3:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 3 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c error.cc -o error.o In file included from error.cc:1: ./error.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c file.cc -o file.o In file included from file.cc:10: ./error.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c fs.cc -o fs.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c getmode.cc -o getmode.o In file included from getmode.cc:1: ./getmode.h:3:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 3 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c id.cc -o id.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cc -o init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c link.cc -o link.o In file included from link.cc:6: ./error.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c path.cc -o path.o In file included from path.cc:9: ./error.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c utils.cc -o utils.o In file included from utils.cc:6: ./error.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c unix/getmode.cc -o unix/getmode.o In file included from unix/getmode.cc:1: ./getmode.h:3:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 3 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/setmode.c -o bsd/setmode.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/strmode.c -o bsd/strmode.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/reallocarray.c -o bsd/reallocarray.o touch libuv-1.44.2/aclocal.m4 && touch libuv-1.44.2/configure && touch libuv-1.44.2/Makefile.in (cd libuv-1.44.2 \ && CC="clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer" CPPFLAGS="-I/usr/local/include" CFLAGS="-g -O3 -Wall -pedantic -fpic -fvisibility=hidden -std=c99" AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-O1" ./configure --quiet) make --directory=libuv-1.44.2 \ HAVE_DTRACE=0 make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpWa2eNs/R.INSTALL3ba6e87d6b29fc/fs/src/libuv-1.44.2' CC src/libuv_la-fs-poll.lo CC src/libuv_la-idna.lo CC src/libuv_la-inet.lo CC src/libuv_la-random.lo CC src/libuv_la-strscpy.lo CC src/libuv_la-threadpool.lo CC src/libuv_la-timer.lo CC src/libuv_la-uv-data-getter-setters.lo CC src/libuv_la-uv-common.lo CC src/libuv_la-version.lo CC src/libuv_la-strtok.lo CC src/unix/libuv_la-async.lo CC src/unix/libuv_la-core.lo CC src/unix/libuv_la-dl.lo CC src/unix/libuv_la-fs.lo CC src/unix/libuv_la-getaddrinfo.lo CC src/unix/libuv_la-getnameinfo.lo CC src/unix/libuv_la-loop-watcher.lo CC src/unix/libuv_la-loop.lo CC src/unix/libuv_la-pipe.lo CC src/unix/libuv_la-poll.lo CC src/unix/libuv_la-process.lo CC src/unix/libuv_la-random-devurandom.lo CC src/unix/libuv_la-signal.lo CC src/unix/libuv_la-stream.lo CC src/unix/libuv_la-tcp.lo CC src/unix/libuv_la-thread.lo CC src/unix/libuv_la-tty.lo CC src/unix/libuv_la-udp.lo CC src/unix/libuv_la-linux-core.lo CC src/unix/libuv_la-linux-inotify.lo CC src/unix/libuv_la-linux-syscalls.lo CC src/unix/libuv_la-procfs-exepath.lo CC src/unix/libuv_la-proctitle.lo CC src/unix/libuv_la-random-getrandom.lo CC src/unix/libuv_la-random-sysctl-linux.lo CC src/unix/libuv_la-epoll.lo CCLD libuv.la make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpWa2eNs/R.INSTALL3ba6e87d6b29fc/fs/src/libuv-1.44.2' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o fs.so dir.o error.o file.o fs.o getmode.o id.o init.o link.o path.o utils.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.44.2/.libs/libuv.a -pthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWa2eNs/R.INSTALL3ba6e87d6b29fc/fs/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-fs/00new/fs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fs) * installing *source* package ‘Rcpp’ ... ** this is package ‘Rcpp’ version ‘1.0.14’ ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvZuWvk/R.INSTALL3bb645214e63ad/Rcpp/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c api.cpp -o api.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c attributes.cpp -o attributes.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c barrier.cpp -o barrier.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c date.cpp -o date.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c module.cpp -o module.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c rcpp_init.cpp -o rcpp_init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvZuWvk/R.INSTALL3bb645214e63ad/Rcpp/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) begin installing package ‘magick’ begin installing package ‘plyr’ begin installing package ‘Rdisop’ begin installing package ‘later’ * installing *source* package ‘cachem’ ... ** this is package ‘cachem’ version ‘1.1.0’ ** package ‘cachem’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmptufe0H/R.INSTALL3bf907462006fb/cachem/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cache.c -o cache.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o cachem.so cache.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmptufe0H/R.INSTALL3bf907462006fb/cachem/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-cachem/00new/cachem/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cachem) begin installing package ‘memoise’ * installing *source* package ‘lifecycle’ ... ** this is package ‘lifecycle’ version ‘1.0.4’ ** package ‘lifecycle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lifecycle) begin installing package ‘gtable’ begin installing package ‘vctrs’ * installing *source* package ‘knitr’ ... ** this is package ‘knitr’ version ‘1.49’ ** package ‘knitr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitr) * installing *source* package ‘Biobase’ ... ** this is package ‘Biobase’ version ‘2.66.0’ ** package ‘Biobase’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpThDeGd/R.INSTALL3bdf1430989614/Biobase/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rinit.c -o Rinit.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c anyMissing.c -o anyMissing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c envir.c -o envir.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c matchpt.c -o matchpt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMedians.c -o rowMedians.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sublist_extract.c -o sublist_extract.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpThDeGd/R.INSTALL3bdf1430989614/Biobase/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Biobase/00new/Biobase/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Biobase) begin installing package ‘affy’ begin installing package ‘pcaMethods’ * installing *source* package ‘memoise’ ... ** this is package ‘memoise’ version ‘2.0.1’ ** package ‘memoise’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (memoise) * installing *source* package ‘callr’ ... ** this is package ‘callr’ version ‘3.7.6’ ** package ‘callr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (callr) begin installing package ‘pkgbuild’ * installing *source* package ‘farver’ ... ** this is package ‘farver’ version ‘2.1.2’ ** package ‘farver’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpu9bfFf/R.INSTALL3ba6ce49eafef1/farver/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c ColorSpace.cpp -o ColorSpace.o ColorSpace.cpp:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c Comparison.cpp -o Comparison.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c Conversion.cpp -o Conversion.o Conversion.cpp:8:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 8 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c encode.cpp -o encode.o In file included from encode.cpp:1: ./encode.h:8:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 8 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c farver.cpp -o farver.o In file included from farver.cpp:1: ./farver.h:6:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 6 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cpp -o init.o In file included from init.cpp:1: ./farver.h:6:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 6 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o farver.so ColorSpace.o Comparison.o Conversion.o encode.o farver.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpu9bfFf/R.INSTALL3ba6ce49eafef1/farver/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-farver/00new/farver/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (farver) begin installing package ‘scales’ * installing *source* package ‘gtable’ ... ** this is package ‘gtable’ version ‘0.3.6’ ** package ‘gtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtable) * installing *source* package ‘httr’ ... ** this is package ‘httr’ version ‘1.4.7’ ** package ‘httr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httr) * installing *source* package ‘htmltools’ ... ** this is package ‘htmltools’ version ‘0.5.8.1’ ** package ‘htmltools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXwEbJz/R.INSTALL3bf909d27f8d4/htmltools/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c template.c -o template.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o htmltools.so init.o template.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXwEbJz/R.INSTALL3bf909d27f8d4/htmltools/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-htmltools/00new/htmltools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmltools) begin installing package ‘sass’ begin installing package ‘fontawesome’ begin installing package ‘jquerylib’ begin installing package ‘crosstalk’ * installing *source* package ‘diffobj’ ... ** this is package ‘diffobj’ version ‘0.3.5’ ** package ‘diffobj’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyXhcY9/R.INSTALL3bde3478fa2d8a/diffobj/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diff.c -o diff.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diffobj.c -o diffobj.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o diffobj.so diff.o diffobj.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyXhcY9/R.INSTALL3bde3478fa2d8a/diffobj/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-diffobj/00new/diffobj/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diffobj) begin installing package ‘waldo’ * installing *source* package ‘segmented’ ... ** this is package ‘segmented’ version ‘2.1-3’ ** package ‘segmented’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (segmented) * installing *source* package ‘fontawesome’ ... ** this is package ‘fontawesome’ version ‘0.5.3’ ** package ‘fontawesome’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fontawesome) * installing *source* package ‘jquerylib’ ... ** this is package ‘jquerylib’ version ‘0.1.4’ ** package ‘jquerylib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jquerylib) * installing *source* package ‘pkgbuild’ ... ** this is package ‘pkgbuild’ version ‘1.4.5’ ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgbuild) begin installing package ‘pkgload’ * installing *source* package ‘crosstalk’ ... ** this is package ‘crosstalk’ version ‘1.2.1’ ** package ‘crosstalk’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crosstalk) * installing *source* package ‘plyr’ ... ** this is package ‘plyr’ version ‘1.8.9’ ** package ‘plyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQxNzvR/R.INSTALL3bfab44270bae7/plyr/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c loop_apply.c -o loop_apply.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c split-numeric.cpp -o split-numeric.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o plyr.so RcppExports.o loop_apply.o split-numeric.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQxNzvR/R.INSTALL3bfab44270bae7/plyr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-plyr/00new/plyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plyr) begin installing package ‘mzID’ * installing *source* package ‘limma’ ... ** this is package ‘limma’ version ‘3.62.1’ ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkNI716/R.INSTALL3bd90f10609b3d/limma/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c normexp.c -o normexp.o normexp.c:18:8: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 18 | void ex(){} | ^ | void normexp.c:154:10: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 154 | void ex(); | ^ | void normexp.c:166:78: warning: passing 'void (*)()' to parameter of type 'void *' converts between void pointer and function pointer [-Wpedantic] 166 | nmmin(3, par, parsOut, Fmin, normexp_m2loglik_saddle, fail, abstol, intol, &ex, alpha, beta, gamma, trace, fncount, maxit); | ^~~ /home/hornik/tmp/R-d-clang-xtra/include/R_ext/Applic.h:72:51: note: passing argument to parameter 'ex' here 72 | int *fail, double abstol, double intol, void *ex, | ^ 3 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c weighted_lowess.c -o weighted_lowess.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o limma.so init.o normexp.o weighted_lowess.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkNI716/R.INSTALL3bd90f10609b3d/limma/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-limma/00new/limma/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (limma) * installing *source* package ‘waldo’ ... ** this is package ‘waldo’ version ‘0.6.1’ ** package ‘waldo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (waldo) * installing *source* package ‘BH’ ... ** this is package ‘BH’ version ‘1.87.0-1’ ** package ‘BH’ successfully unpacked and MD5 sums checked ** using staged installation ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BH) begin installing package ‘BiocParallel’ * installing *source* package ‘scales’ ... ** this is package ‘scales’ version ‘1.3.0’ ** package ‘scales’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scales) * installing *source* package ‘affy’ ... ** this is package ‘affy’ version ‘1.84.0’ ** package ‘affy’ successfully unpacked and MD5 sums checked ** using staged installation creating cache ./config.cache checking how to run the C preprocessor... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -E checking for main in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes updating cache ./config.cache creating ./config.status creating src/Makevars ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2T1rxC/R.INSTALL3bfe1f2f97228e/affy/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c chipbackground.c -o chipbackground.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c getall_locations.c -o getall_locations.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c mas5calls.c -o mas5calls.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c rma2.c -o rma2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c rma_common.c -o rma_common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2T1rxC/R.INSTALL3bfe1f2f97228e/affy/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-affy/00new/affy/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affy) * installing *source* package ‘pkgload’ ... ** this is package ‘pkgload’ version ‘1.4.0’ ** package ‘pkgload’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgload) begin installing package ‘testthat’ * installing *source* package ‘later’ ... ** this is package ‘later’ version ‘1.4.1’ ** package ‘later’ successfully unpacked and MD5 sums checked ** using staged installation Running configure script -latomic linker flag not needed. Found UBSAN. Will skip tests that raise false positives. ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDiVC3f/R.INSTALL3bfab86fd412f1/later/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c callback_registry.cpp -o callback_registry.o In file included from callback_registry.cpp:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c debug.cpp -o debug.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c fd.cpp -o fd.o In file included from fd.cpp:7: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c later.cpp -o later.o In file included from later.cpp:1: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c later_posix.cpp -o later_posix.o In file included from later_posix.cpp:9: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c later_win32.cpp -o later_win32.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c timer_posix.cpp -o timer_posix.o In file included from timer_posix.cpp:6: In file included from ./timer_posix.h:8: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c timestamp_unix.cpp -o timestamp_unix.o In file included from timestamp_unix.cpp:5: In file included from ./timeconv.h:9: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c timestamp_win32.cpp -o timestamp_win32.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tinycthread.c -o tinycthread.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c wref.c -o wref.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o later.so RcppExports.o callback_registry.o debug.o fd.o init.o later.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o tinycthread.o wref.o -pthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDiVC3f/R.INSTALL3bfab86fd412f1/later/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-later/00new/later/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (later) begin installing package ‘promises’ * installing *source* package ‘mzID’ ... ** this is package ‘mzID’ version ‘1.44.0’ ** package ‘mzID’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mzID) * installing *source* package ‘pcaMethods’ ... ** this is package ‘pcaMethods’ version ‘1.98.0’ ** package ‘pcaMethods’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpl25bjp/R.INSTALL3bfe21555e075f/pcaMethods/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c nipals.cpp -o nipals.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o pcaMethods.so RcppExports.o nipals.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpl25bjp/R.INSTALL3bfe21555e075f/pcaMethods/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-pcaMethods/00new/pcaMethods/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘loadings’ in package ‘pcaMethods’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcaMethods) * installing *source* package ‘data.table’ ... ** this is package ‘data.table’ version ‘1.16.4’ ** package ‘data.table’ successfully unpacked and MD5 sums checked ** using staged installation zlib 1.3.1 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp655ORw/R.INSTALL3bd7d42d727432/data.table/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c assign.c -o assign.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c between.c -o between.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c bmerge.c -o bmerge.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c chmatch.c -o chmatch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c cj.c -o cj.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c coalesce.c -o coalesce.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c dogroups.c -o dogroups.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fastmean.c -o fastmean.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fcast.c -o fcast.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fifelse.c -o fifelse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fmelt.c -o fmelt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c forder.c -o forder.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c frank.c -o frank.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fread.c -o fread.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c freadR.c -o freadR.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c froll.c -o froll.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c frollR.c -o frollR.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c frolladaptive.c -o frolladaptive.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fsort.c -o fsort.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fwrite.c -o fwrite.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fwriteR.c -o fwriteR.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c gsumm.c -o gsumm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c idatetime.c -o idatetime.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ijoin.c -o ijoin.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c inrange.c -o inrange.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c nafill.c -o nafill.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c negate.c -o negate.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c nqrecreateindices.c -o nqrecreateindices.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c openmp-utils.c -o openmp-utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c programming.c -o programming.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c quickselect.c -o quickselect.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c rbindlist.c -o rbindlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c reorder.c -o reorder.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c shift.c -o shift.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c snprintf.c -o snprintf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c subset.c -o subset.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c transpose.c -o transpose.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c types.c -o types.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c uniqlist.c -o uniqlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c vecseq.c -o vecseq.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c wrappers.c -o wrappers.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR PKG_CFLAGS = -fopenmp PKG_LIBS = -fopenmp -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp655ORw/R.INSTALL3bd7d42d727432/data.table/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) * installing *source* package ‘Rdisop’ ... ** this is package ‘Rdisop’ version ‘1.66.0’ ** package ‘Rdisop’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4NbGw7/R.INSTALL3bfab65d55954a/Rdisop/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c disop.cpp -o disop.o disop.cpp:106:8: warning: unused variable 'parityeven' [-Wunused-variable] 106 | bool parityeven = !parityodd; | ^~~~~~~~~~ disop.cpp:191:6: warning: unused variable 'number_molecules_shown' [-Wunused-variable] 191 | int number_molecules_shown = 100; | ^~~~~~~~~~~~~~~~~~~~~~ In file included from disop.cpp:28: ./imslib/src/ims/decomp/decomputils.h:92:53: warning: unused typedef 'weight_type' [-Wunused-local-typedef] 92 | typedef typename DecompositionWeights::weight_type weight_type; | ^ disop.cpp:174:42: warning: unused typedef 'decomposition_type' [-Wunused-local-typedef] 174 | typedef decompositions_t::value_type decomposition_type; | ^ disop.cpp:169:39: warning: unused typedef 'mass_type' [-Wunused-local-typedef] 169 | typedef distribution_t::mass_type mass_type; | ^ disop.cpp:171:47: warning: unused typedef 'nominal_mass_type' [-Wunused-local-typedef] 171 | typedef distribution_t::nominal_mass_type nominal_mass_type; | ^ disop.cpp:377:40: warning: unused typedef 'mass_type' [-Wunused-local-typedef] 377 | typedef distribution_t::mass_type mass_type; | ^ disop.cpp:626:43: warning: unused typedef 'scorer_type' [-Wunused-local-typedef] 626 | typedef DistributionProbabilityScorer scorer_type; | ^ disop.cpp:709:32: warning: unused typedef 'elements_type' [-Wunused-local-typedef] 709 | typedef alphabet_t::container elements_type; | ^ disop.cpp:814:33: warning: unused typedef 'elements_type' [-Wunused-local-typedef] 814 | typedef alphabet_t::container elements_type; | ^ 10 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/element.cpp -o imslib/src/ims/element.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/composedelement.cpp -o imslib/src/ims/composedelement.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/isotopedistribution.cpp -o imslib/src/ims/isotopedistribution.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/alphabet.cpp -o imslib/src/ims/alphabet.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/weights.cpp -o imslib/src/ims/weights.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/distributedalphabet.cpp -o imslib/src/ims/distributedalphabet.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/transformation.cpp -o imslib/src/ims/transformation.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/isotopespecies.cpp -o imslib/src/ims/isotopespecies.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/alphabettextparser.cpp -o imslib/src/ims/base/parser/alphabettextparser.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/distributedalphabettextparser.cpp -o imslib/src/ims/base/parser/distributedalphabettextparser.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/massestextparser.cpp -o imslib/src/ims/base/parser/massestextparser.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/moleculesequenceparser.cpp -o imslib/src/ims/base/parser/moleculesequenceparser.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/standardmoleculesequenceparser.cpp -o imslib/src/ims/base/parser/standardmoleculesequenceparser.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/keggligandcompoundsparser.cpp -o imslib/src/ims/base/parser/keggligandcompoundsparser.o imslib/src/ims/base/parser/keggligandcompoundsparser.cpp:53:31: warning: '&&' within '||' [-Wlogical-op-parentheses] 53 | for (; letter_pos < last_pos && | ~~~~~~~~~~~~~~~~~~~~~~^~ 54 | ( std::isalpha(sequence[letter_pos]) && std::isupper(sequence[letter_pos])) || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ imslib/src/ims/base/parser/keggligandcompoundsparser.cpp:53:31: note: place parentheses around the '&&' expression to silence this warning 53 | for (; letter_pos < last_pos && | ^ | ( 54 | ( std::isalpha(sequence[letter_pos]) && std::isupper(sequence[letter_pos])) || | ) 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/moleculeionchargemodificationparser.cpp -o imslib/src/ims/base/parser/moleculeionchargemodificationparser.o imslib/src/ims/base/parser/moleculeionchargemodificationparser.cpp:102:18: warning: variable 'i' set but not used [-Wunused-but-set-variable] 102 | for (size_type i = 0; letter_pos < len && | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/calib/linepairstabber.cpp -o imslib/src/ims/calib/linepairstabber.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/calib/matchmatrix.cpp -o imslib/src/ims/calib/matchmatrix.o imslib/src/ims/calib/matchmatrix.cpp:84:6: warning: variable 'score' set but not used [-Wunused-but-set-variable] 84 | int score = 0; | ^ imslib/src/ims/calib/matchmatrix.cpp:106:6: warning: variable 'score' set but not used [-Wunused-but-set-variable] 106 | int score = 0; | ^ 2 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/calib/linearpointsetmatcher.cpp -o imslib/src/ims/calib/linearpointsetmatcher.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/decomp/realmassdecomposer.cpp -o imslib/src/ims/decomp/realmassdecomposer.o In file included from imslib/src/ims/decomp/realmassdecomposer.cpp:9: ./imslib/src/ims/decomp/decomputils.h:92:53: warning: unused typedef 'weight_type' [-Wunused-local-typedef] 92 | typedef typename DecompositionWeights::weight_type weight_type; | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/utils/distribution.cpp -o imslib/src/ims/utils/distribution.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/distributionprobabilityscorer.cpp -o imslib/src/ims/distributionprobabilityscorer.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/characteralphabet.cpp -o imslib/src/ims/characteralphabet.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/nitrogenrulefilter.cpp -o imslib/src/ims/nitrogenrulefilter.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Rdisop.so disop.o imslib/src/ims/element.o imslib/src/ims/composedelement.o imslib/src/ims/isotopedistribution.o imslib/src/ims/alphabet.o imslib/src/ims/weights.o imslib/src/ims/distributedalphabet.o imslib/src/ims/transformation.o imslib/src/ims/isotopespecies.o imslib/src/ims/base/parser/alphabettextparser.o imslib/src/ims/base/parser/distributedalphabettextparser.o imslib/src/ims/base/parser/massestextparser.o imslib/src/ims/base/parser/moleculesequenceparser.o imslib/src/ims/base/parser/standardmoleculesequenceparser.o imslib/src/ims/base/parser/keggligandcompoundsparser.o imslib/src/ims/base/parser/moleculeionchargemodificationparser.o imslib/src/ims/calib/linepairstabber.o imslib/src/ims/calib/matchmatrix.o imslib/src/ims/calib/linearpointsetmatcher.o imslib/src/ims/decomp/realmassdecomposer.o imslib/src/ims/utils/distribution.o imslib/src/ims/distributionprobabilityscorer.o imslib/src/ims/characteralphabet.o imslib/src/ims/nitrogenrulefilter.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4NbGw7/R.INSTALL3bfab65d55954a/Rdisop/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rdisop/00new/Rdisop/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rdisop) * installing *source* package ‘kernlab’ ... ** this is package ‘kernlab’ version ‘0.9-33’ ** package ‘kernlab’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplIpFeg/R.INSTALL3bb7614163948b/kernlab/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c brweight.cpp -o brweight.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c ctable.cpp -o ctable.o ctable.cpp:60:9: warning: variable 'lcp_idx' set but not used [-Wunused-but-set-variable] 60 | UInt32 lcp_idx = 0, lcp_prev_idx = 0; | ^ ctable.cpp:60:22: warning: variable 'lcp_prev_idx' set but not used [-Wunused-but-set-variable] 60 | UInt32 lcp_idx = 0, lcp_prev_idx = 0; | ^ 2 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c cweight.cpp -o cweight.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dbreakpt.c -o dbreakpt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dcauchy.c -o dcauchy.o dcauchy.c:91:29: warning: variable 'nsteps' set but not used [-Wunused-but-set-variable] 91 | int search, interp, nbrpt, nsteps = 1, i, inc = 1; | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dgpnrm.c -o dgpnrm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dgpstep.c -o dgpstep.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dprecond.c -o dprecond.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dprsrch.c -o dprsrch.o dprsrch.c:93:25: warning: variable 'nsteps' set but not used [-Wunused-but-set-variable] 93 | int search = 1, nbrpt, nsteps = 0, i, inc = 1; | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dspcg.c -o dspcg.o dspcg.c:115:44: warning: variable 'iters' set but not used [-Wunused-but-set-variable] 115 | int i, j, nfaces, nfree, inc = 1, infotr, iters = 0, itertr; | ^ dspcg.c:116:40: warning: variable 'alpha' set but not used [-Wunused-but-set-variable] 116 | double gfnorm, gfnormf, stol = 1e-16, alpha; | ^ 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dtron.c -o dtron.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dtrpcg.c -o dtrpcg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dtrqsol.c -o dtrqsol.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c esa.cpp -o esa.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c expdecayweight.cpp -o expdecayweight.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c inductionsort.cpp -o inductionsort.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c kspectrumweight.cpp -o kspectrumweight.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c lcp.cpp -o lcp.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c misc.c -o misc.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c msufsort.cpp -o msufsort.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c solvebqp.c -o solvebqp.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stringk.c -o stringk.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stringkernel.cpp -o stringkernel.o In file included from stringkernel.cpp:53: ./stringkernel.h:106:7: warning: private field '_verb' is not used [-Wunused-private-field] 106 | int _verb; | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c svm.cpp -o svm.o svm.cpp:1474:6: warning: variable 'iter' set but not used [-Wunused-but-set-variable] 1474 | int iter = 0, counter = min(l*2, 2000) + 1; | ^ svm.cpp:1549:9: warning: variable 'obj' set but not used [-Wunused-but-set-variable] 1549 | double obj = 0; | ^ svm.cpp:1556:6: warning: variable 'nSV' set but not used [-Wunused-but-set-variable] 1556 | int nSV = 0, nFREE = 0; | ^ svm.cpp:1556:15: warning: variable 'nFREE' set but not used [-Wunused-but-set-variable] 1556 | int nSV = 0, nFREE = 0; | ^ svm.cpp:1857:6: warning: variable 'iter' set but not used [-Wunused-but-set-variable] 1857 | int iter = 0; | ^ svm.cpp:2152:6: warning: 'Solver_B_linear::Solve' hides overloaded virtual function [-Woverloaded-virtual] 2152 | int Solve(int l, svm_node * const * x_, double *b_, schar *y_, | ^ svm.cpp:1709:15: note: hidden overloaded virtual function 'Solver_B::Solve' declared here: different number of parameters (11 vs 12) 1709 | virtual void Solve(int l, const Kernel& Q, double *b_, schar *y_, | ^ svm.cpp:2431:7: warning: 'Solver_MB::Solve' hides overloaded virtual function [-Woverloaded-virtual] 2431 | void Solve(int l, const Kernel& Q, double lin, double *alpha_, | ^ svm.cpp:1709:15: note: hidden overloaded virtual function 'Solver_B::Solve' declared here: different number of parameters (11 vs 12) 1709 | virtual void Solve(int l, const Kernel& Q, double *b_, schar *y_, | ^ svm.cpp:2665:6: warning: variable 'iter' set but not used [-Wunused-but-set-variable] 2665 | int iter = 0; | ^ svm.cpp:3626:7: warning: variable 'totaliter' set but not used [-Wunused-but-set-variable] 3626 | int totaliter = 0; | ^ svm.cpp:3715:7: warning: variable 'totaliter' set but not used [-Wunused-but-set-variable] 3715 | int totaliter = 0; | ^ svm.cpp:3758:9: warning: variable 'sum_alpha' set but not used [-Wunused-but-set-variable] 3758 | double sum_alpha = 0; | ^ svm.cpp:3888:17: warning: variable 's' set but not used [-Wunused-but-set-variable] 3888 | const char* s; | ^ svm.cpp:4110:11: warning: variable 'sum_alpha' set but not used [-Wunused-but-set-variable] 4110 | double sum_alpha = 0; | ^ svm.cpp:4189:17: warning: variable 's' set but not used [-Wunused-but-set-variable] 4189 | const char* s; | ^ 14 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wkasailcp.cpp -o wkasailcp.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wmsufsort.cpp -o wmsufsort.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o kernlab.so brweight.o ctable.o cweight.o dbreakpt.o dcauchy.o dgpnrm.o dgpstep.o dprecond.o dprsrch.o dspcg.o dtron.o dtrpcg.o dtrqsol.o esa.o expdecayweight.o inductionsort.o init.o kspectrumweight.o lcp.o misc.o msufsort.o solvebqp.o stringk.o stringkernel.o svm.o wkasailcp.o wmsufsort.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplIpFeg/R.INSTALL3bb7614163948b/kernlab/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-kernlab/00new/kernlab/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘pattern’ in package ‘kernlab’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kernlab) * installing *source* package ‘promises’ ... ** this is package ‘promises’ version ‘1.3.2’ ** package ‘promises’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTS31Kt/R.INSTALL3c08527360dbf3/promises/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c promise_task.cpp -o promise_task.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o promises.so RcppExports.o promise_task.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTS31Kt/R.INSTALL3c08527360dbf3/promises/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-promises/00new/promises/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (promises) begin installing package ‘httpuv’ * installing *source* package ‘S4Vectors’ ... ** this is package ‘S4Vectors’ version ‘0.44.0’ ** package ‘S4Vectors’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFySic0/R.INSTALL3bdf891812f99b/S4Vectors/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c AEbufs.c -o AEbufs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c DataFrame_class.c -o DataFrame_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Hits_class.c -o Hits_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c LLint_class.c -o LLint_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c List_class.c -o List_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_S4Vectors.c -o R_init_S4Vectors.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rle_class.c -o Rle_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rle_utils.c -o Rle_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SEXP_utils.c -o SEXP_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SimpleList_class.c -o SimpleList_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c anyMissing.c -o anyMissing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c character_utils.c -o character_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c eval_utils.c -o eval_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hash_utils.c -o hash_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c integer_utils.c -o integer_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c logical_utils.c -o logical_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c map_ranges_to_runs.c -o map_ranges_to_runs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raw_utils.c -o raw_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c safe_arithm.c -o safe_arithm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sort_utils.c -o sort_utils.o sort_utils.c:263:13: warning: unused function 'sort_uchar_array' [-Wunused-function] 263 | static void sort_uchar_array(unsigned char *x, int nelt, int desc) | ^~~~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c subsetting_utils.c -o subsetting_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vector_utils.c -o vector_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o S4Vectors.so AEbufs.o DataFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o raw_utils.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFySic0/R.INSTALL3bdf891812f99b/S4Vectors/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-S4Vectors/00new/S4Vectors/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘normalizeSingleBracketReplacementValue’ with signature ‘"List"’: no definition for class “List” Creating a new generic function for ‘unname’ in package ‘S4Vectors’ Creating a new generic function for ‘expand.grid’ in package ‘S4Vectors’ Creating a new generic function for ‘findMatches’ in package ‘S4Vectors’ Creating a generic function for ‘setequal’ from package ‘base’ in package ‘S4Vectors’ in method for ‘coerce’ with signature ‘"Hits","DFrame"’: no definition for class “DFrame” Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘tabulate’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘cov’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘cor’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘substr’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘substring’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘chartr’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘tolower’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘toupper’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘sub’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘gsub’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘nlevels’ from package ‘base’ in package ‘S4Vectors’ in method for ‘coerce’ with signature ‘"data.table","DFrame"’: no definition for class “data.table” Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘S4Vectors’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (S4Vectors) begin installing package ‘IRanges’ begin installing package ‘MsCoreUtils’ begin installing package ‘UCSC.utils’ * installing *source* package ‘vctrs’ ... ** this is package ‘vctrs’ version ‘0.6.5’ ** package ‘vctrs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFe7zS3/R.INSTALL3bfd713b69d2d1/vctrs/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c altrep-lazy-character.c -o altrep-lazy-character.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c altrep-rle.c -o altrep-rle.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c altrep.c -o altrep.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c arg-counter.c -o arg-counter.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c arg.c -o arg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c assert.c -o assert.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c bind.c -o bind.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c c-unchop.c -o c-unchop.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c c.c -o c.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c callables.c -o callables.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cast-bare.c -o cast-bare.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cast-dispatch.c -o cast-dispatch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cast.c -o cast.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c compare.c -o compare.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c complete.c -o complete.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c conditions.c -o conditions.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c dictionary.c -o dictionary.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c dim.c -o dim.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c empty.c -o empty.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c equal.c -o equal.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c expand.c -o expand.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c fields.c -o fields.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c fill.c -o fill.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c globals.c -o globals.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c group.c -o group.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c growable.c -o growable.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c hash.c -o hash.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c interval.c -o interval.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c match-joint.c -o match-joint.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c match.c -o match.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c missing.c -o missing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c names.c -o names.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-collate.c -o order-collate.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-groups.c -o order-groups.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-sortedness.c -o order-sortedness.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-truelength.c -o order-truelength.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order.c -o order.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c poly-op.c -o poly-op.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c proxy-restore.c -o proxy-restore.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c proxy.c -o proxy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype-common.c -o ptype-common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype.c -o ptype.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype2-dispatch.c -o ptype2-dispatch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype2.c -o ptype2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rank.c -o rank.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rep.c -o rep.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang-dev.c -o rlang-dev.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang.c -o rlang.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c runs.c -o runs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c set.c -o set.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c shape.c -o shape.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c size-common.c -o size-common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c size.c -o size.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-array.c -o slice-array.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-assign-array.c -o slice-assign-array.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-assign.c -o slice-assign.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-chop.c -o slice-chop.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-interleave.c -o slice-interleave.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice.c -o slice.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c split.c -o split.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c subscript-loc.c -o subscript-loc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c subscript.c -o subscript.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c translate.c -o translate.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-data-frame.c -o type-data-frame.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-date-time.c -o type-date-time.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-factor.c -o type-factor.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-info.c -o type-info.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-integer64.c -o type-integer64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-tibble.c -o type-tibble.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c typeof2-s3.c -o typeof2-s3.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c typeof2.c -o typeof2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c unspecified.c -o unspecified.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils-dispatch.c -o utils-dispatch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vctrs-core.c -o vctrs-core.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o vctrs.so altrep-lazy-character.o altrep-rle.o altrep.o arg-counter.o arg.o assert.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o empty.o equal.o expand.o fields.o fill.o globals.o group.o growable.o hash.o init.o interval.o match-joint.o match.o missing.o names.o order-collate.o order-groups.o order-sortedness.o order-truelength.o order.o poly-op.o proxy-restore.o proxy.o ptype-common.o ptype.o ptype2-dispatch.o ptype2.o rank.o rep.o rlang-dev.o rlang.o runs.o set.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice-interleave.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-integer64.o type-tibble.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils.o vctrs-core.o version.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFe7zS3/R.INSTALL3bfd713b69d2d1/vctrs/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-vctrs/00new/vctrs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vctrs) begin installing package ‘hms’ begin installing package ‘tidyselect’ begin installing package ‘pillar’ begin installing package ‘purrr’ begin installing package ‘igraph’ * installing *source* package ‘BiocParallel’ ... ** this is package ‘BiocParallel’ version ‘1.40.0’ ** package ‘BiocParallel’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes checking for clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... none needed checking for library containing shm_open... none required checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/mman.h... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWYMNG4/R.INSTALL3c045f2652ecf8/BiocParallel/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c cpp11.cpp -o cpp11.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c ipcmutex.cpp -o ipcmutex.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o BiocParallel.so cpp11.o ipcmutex.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWYMNG4/R.INSTALL3c045f2652ecf8/BiocParallel/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-BiocParallel/00new/BiocParallel/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocParallel) * installing *source* package ‘hms’ ... ** this is package ‘hms’ version ‘1.1.3’ ** package ‘hms’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hms) begin installing package ‘progress’ * installing *source* package ‘tidyselect’ ... ** this is package ‘tidyselect’ version ‘1.2.1’ ** package ‘tidyselect’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyselect) * installing *source* package ‘UCSC.utils’ ... ** this is package ‘UCSC.utils’ version ‘1.2.0’ ** package ‘UCSC.utils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UCSC.utils) * installing *source* package ‘progress’ ... ** this is package ‘progress’ version ‘1.2.3’ ** package ‘progress’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (progress) * installing *source* package ‘purrr’ ... ** this is package ‘purrr’ version ‘1.0.2’ ** package ‘purrr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppeWMze/R.INSTALL3c0ec1785811d1/purrr/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c backports.c -o backports.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c coerce.c -o coerce.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c conditions.c -o conditions.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c flatten.c -o flatten.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c map.c -o map.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c pluck.c -o pluck.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c transpose.c -o transpose.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o purrr.so backports.o cleancall.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppeWMze/R.INSTALL3c0ec1785811d1/purrr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-purrr/00new/purrr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (purrr) * installing *source* package ‘pillar’ ... ** this is package ‘pillar’ version ‘1.10.1’ ** package ‘pillar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pillar) begin installing package ‘tibble’ * installing *source* package ‘MsCoreUtils’ ... ** this is package ‘MsCoreUtils’ version ‘1.18.0’ ** package ‘MsCoreUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0d5tl8/R.INSTALL3c0da54deb6b81/MsCoreUtils/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c between.c -o between.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c closest.c -o closest.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c impNeighbourAvg.c -o impNeighbourAvg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c join.c -o join.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c localMaxima.c -o localMaxima.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lowerConvexHull.c -o lowerConvexHull.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c maxi.c -o maxi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c morphologicalFilters.c -o morphologicalFilters.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c snip.c -o snip.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sumi.c -o sumi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c which.c -o which.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o MsCoreUtils.so between.o closest.o impNeighbourAvg.o init.o join.o localMaxima.o lowerConvexHull.o maxi.o morphologicalFilters.o snip.o sumi.o which.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0d5tl8/R.INSTALL3c0da54deb6b81/MsCoreUtils/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-MsCoreUtils/00new/MsCoreUtils/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MsCoreUtils) begin installing package ‘MetaboCoreUtils’ * installing *source* package ‘magick’ ... ** this is package ‘magick’ version ‘2.8.5’ ** package ‘magick’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 Using PKG_LIBS=-lMagick++-7.Q16 -lMagickWand-7.Q16 -lMagickCore-7.Q16 ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp992rHt/R.INSTALL3bfab3444d0527/magick/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c animation.cpp -o animation.o In file included from animation.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c attributes.cpp -o attributes.o In file included from attributes.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c base.cpp -o base.o In file included from base.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c color.cpp -o color.o In file included from color.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c composite.cpp -o composite.o In file included from composite.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c config.cc -o config.o In file included from config.cc:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c convolve.cpp -o convolve.o In file included from convolve.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c device.cpp -o device.o In file included from device.cpp:9: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c edges.cpp -o edges.o In file included from edges.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c edit.cpp -o edit.o In file included from edit.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c fonts.cpp -o fonts.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c options.cpp -o options.o In file included from options.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c properties.cpp -o properties.o In file included from properties.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c resize.cpp -o resize.o In file included from resize.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c segment.cpp -o segment.o In file included from segment.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c transformations.cpp -o transformations.o In file included from transformations.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o magick.so RcppExports.o animation.o attributes.o base.o color.o composite.o config.o convolve.o device.o edges.o edit.o fonts.o options.o properties.o resize.o segment.o transformations.o -lMagick++-7.Q16 -lMagickWand-7.Q16 -lMagickCore-7.Q16 -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp992rHt/R.INSTALL3bfab3444d0527/magick/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-magick/00new/magick/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magick) begin installing package ‘animation’ * installing *source* package ‘tibble’ ... ** this is package ‘tibble’ version ‘3.2.1’ ** package ‘tibble’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEzm2kP/R.INSTALL3c14e81f378458/tibble/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c attributes.c -o attributes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c coerce.c -o coerce.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c matrixToDataFrame.c -o matrixToDataFrame.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEzm2kP/R.INSTALL3c14e81f378458/tibble/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-tibble/00new/tibble/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tibble) begin installing package ‘ggplot2’ begin installing package ‘dplyr’ * installing *source* package ‘MetaboCoreUtils’ ... ** this is package ‘MetaboCoreUtils’ version ‘1.14.0’ ** package ‘MetaboCoreUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MetaboCoreUtils) * installing *source* package ‘stringi’ ... ** this is package ‘stringi’ version ‘1.8.4’ ** package ‘stringi’ successfully unpacked and MD5 sums checked ** using staged installation checking for R_HOME... /home/hornik/tmp/R-d-clang-xtra checking for R... /home/hornik/tmp/R-d-clang-xtra/bin/R checking for endianness... little checking for cat... /usr/bin/cat checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes checking for clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... none needed checking whether the C++ compiler supports the 'long long' type... yes checking whether the compiler implements namespaces... yes checking whether the compiler supports the Standard Template Library... yes checking whether std::map is available... yes checking for pkg-config... /usr/bin/pkg-config checking with 'pkg-config' for the system ICU4C (icu-i18n icu-uc)... 72.1 checking for ICU4C >= 61... yes checking for additional CPPFLAGS, LDFLAGS, and LIBS required... done checking whether an ICU4C-based project can be built... yes checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes checking the capabilities of the ICU data library (ucol)... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for elf.h... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/uconfig_local.h config.status: creating src/install.libs.R *** stringi configure summary: ICU_FOUND=1 STRINGI_CXXSTD= STRINGI_CXXFLAGS= -fpic STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H STRINGI_LDFLAGS= -L/usr/lib/x86_64-linux-gnu STRINGI_LIBS= -licui18n -licuuc -licudata *** Compiler settings used: CXX=clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 LD=clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 CXXFLAGS=-g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw CPPFLAGS=-I/usr/local/include LDFLAGS= LIBS= ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxKYHe7/R.INSTALL3ba6db5712f668/stringi/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_brkiter.cpp -o stri_brkiter.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_collator.cpp -o stri_collator.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_common.cpp -o stri_common.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_compare.cpp -o stri_compare.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_base.cpp -o stri_container_base.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_listint.cpp -o stri_container_listint.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_listraw.cpp -o stri_container_listraw.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_listutf8.cpp -o stri_container_listutf8.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_regex.cpp -o stri_container_regex.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_usearch.cpp -o stri_container_usearch.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_utf16.cpp -o stri_container_utf16.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_utf8.cpp -o stri_container_utf8.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_encoding_detection.cpp -o stri_encoding_detection.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_encoding_management.cpp -o stri_encoding_management.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_escape.cpp -o stri_escape.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_exception.cpp -o stri_exception.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_ICU_settings.cpp -o stri_ICU_settings.o In file included from stri_ICU_settings.cpp:37: ./uconfig_local.h:42:9: warning: 'UCONFIG_USE_WINDOWS_LCID_MAPPING_API' macro redefined [-Wmacro-redefined] 42 | #define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 0 | ^ /usr/include/unicode/uconfig.h:381:12: note: previous definition is here 381 | # define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_join.cpp -o stri_join.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_length.cpp -o stri_length.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_pad.cpp -o stri_pad.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_prepare_arg.cpp -o stri_prepare_arg.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_random.cpp -o stri_random.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_reverse.cpp -o stri_reverse.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_count.cpp -o stri_search_class_count.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_detect.cpp -o stri_search_class_detect.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_extract.cpp -o stri_search_class_extract.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_locate.cpp -o stri_search_class_locate.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_replace.cpp -o stri_search_class_replace.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_split.cpp -o stri_search_class_split.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_subset.cpp -o stri_search_class_subset.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_trim.cpp -o stri_search_class_trim.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_common.cpp -o stri_search_common.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_count.cpp -o stri_search_coll_count.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_split.cpp -o stri_search_coll_split.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_in.cpp -o stri_search_in.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_other_split.cpp -o stri_search_other_split.o stri_search_other_split.cpp:202:24: warning: variable 'k' set but not used [-Wunused-but-set-variable] 202 | R_len_t jlast, k=1; | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_count.cpp -o stri_search_regex_count.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_match.cpp -o stri_search_regex_match.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_split.cpp -o stri_search_regex_split.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_sort.cpp -o stri_sort.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_sprintf.cpp -o stri_sprintf.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_stats.cpp -o stri_stats.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_string8.cpp -o stri_string8.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_stringi.cpp -o stri_stringi.o In file included from stri_stringi.cpp:39: ./uconfig_local.h:42:9: warning: 'UCONFIG_USE_WINDOWS_LCID_MAPPING_API' macro redefined [-Wmacro-redefined] 42 | #define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 0 | ^ /usr/include/unicode/uconfig.h:381:12: note: previous definition is here 381 | # define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_sub.cpp -o stri_sub.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_test.cpp -o stri_test.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_time_zone.cpp -o stri_time_zone.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_time_calendar.cpp -o stri_time_calendar.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_time_symbols.cpp -o stri_time_symbols.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_time_format.cpp -o stri_time_format.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_trans_casemap.cpp -o stri_trans_casemap.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_trans_other.cpp -o stri_trans_other.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_trans_normalization.cpp -o stri_trans_normalization.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_ucnv.cpp -o stri_ucnv.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_uloc.cpp -o stri_uloc.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_utils.cpp -o stri_utils.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_wrap.cpp -o stri_wrap.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_sprintf.o stri_stats.o stri_string8.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxKYHe7/R.INSTALL3ba6db5712f668/stringi/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-stringi/00new/stringi ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stringi) begin installing package ‘stringr’ * installing *source* package ‘animation’ ... ** this is package ‘animation’ version ‘2.7’ ** package ‘animation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (animation) * installing *source* package ‘stringr’ ... ** this is package ‘stringr’ version ‘1.5.1’ ** package ‘stringr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stringr) begin installing package ‘reshape2’ * installing *source* package ‘testthat’ ... ** this is package ‘testthat’ version ‘3.2.3’ ** package ‘testthat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7JQmUS/R.INSTALL3c0840108b9f60/testthat/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reassign.c -o reassign.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c test-catch.cpp -o test-catch.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c test-example.cpp -o test-example.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c test-runner.cpp -o test-runner.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7JQmUS/R.INSTALL3c0840108b9f60/testthat/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-testthat/00new/testthat/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (testthat) * installing *source* package ‘reshape2’ ... ** this is package ‘reshape2’ version ‘1.4.4’ ** package ‘reshape2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxhgT7Q/R.INSTALL3c1c76566a5a2d/reshape2/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c melt.cpp -o melt.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o reshape2.so RcppExports.o melt.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxhgT7Q/R.INSTALL3c1c76566a5a2d/reshape2/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-reshape2/00new/reshape2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reshape2) * installing *source* package ‘dplyr’ ... ** this is package ‘dplyr’ version ‘1.1.4’ ** package ‘dplyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzxmevP/R.INSTALL3c1a1c64341cb7/dplyr/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c chop.cpp -o chop.o In file included from chop.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c filter.cpp -o filter.o In file included from filter.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c funs.cpp -o funs.o In file included from funs.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c group_by.cpp -o group_by.o In file included from group_by.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c group_data.cpp -o group_data.o In file included from group_data.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imports.cpp -o imports.o In file included from imports.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cpp -o init.o In file included from init.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c mask.cpp -o mask.o In file included from mask.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c mutate.cpp -o mutate.o In file included from mutate.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c reconstruct.cpp -o reconstruct.o In file included from reconstruct.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c slice.cpp -o slice.o In file included from slice.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c summarise.cpp -o summarise.o In file included from summarise.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o reconstruct.o slice.o summarise.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzxmevP/R.INSTALL3c1a1c64341cb7/dplyr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-dplyr/00new/dplyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dplyr) begin installing package ‘tidyr’ * installing *source* package ‘tidyr’ ... ** this is package ‘tidyr’ version ‘1.3.1’ ** package ‘tidyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZEV61D/R.INSTALL3c20fb5cd0c237/tidyr/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c cpp11.cpp -o cpp11.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c melt.cpp -o melt.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c simplifyPieces.cpp -o simplifyPieces.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o tidyr.so cpp11.o melt.o simplifyPieces.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZEV61D/R.INSTALL3c20fb5cd0c237/tidyr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-tidyr/00new/tidyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyr) * installing *source* package ‘ggplot2’ ... ** this is package ‘ggplot2’ version ‘3.5.1’ ** package ‘ggplot2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggplot2) begin installing package ‘vsn’ * installing *source* package ‘httpuv’ ... ** this is package ‘httpuv’ version ‘1.6.15’ ** package ‘httpuv’ successfully unpacked and MD5 sums checked ** using staged installation ** Using libuv found by pkg-config in /usr ** PKG_CFLAGS= ** PKG_LIBS=-luv -lpthread -ldl -lrt ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpftgIzC/R.INSTALL3c0d06225429e3/httpuv/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c callback.cpp -o callback.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c callbackqueue.cpp -o callbackqueue.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c filedatasource-unix.cpp -o filedatasource-unix.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c filedatasource-win.cpp -o filedatasource-win.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c fs.cpp -o fs.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c gzipdatasource.cpp -o gzipdatasource.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c http.cpp -o http.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c httprequest.cpp -o httprequest.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c httpresponse.cpp -o httpresponse.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c httpuv.cpp -o httpuv.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c mime.cpp -o mime.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c socket.cpp -o socket.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c staticpath.cpp -o staticpath.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c thread.cpp -o thread.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c timegm.cpp -o timegm.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c utils.cpp -o utils.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c uvutil.cpp -o uvutil.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c webapplication.cpp -o webapplication.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c websockets-base.cpp -o websockets-base.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c websockets-hixie76.cpp -o websockets-hixie76.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c websockets-hybi03.cpp -o websockets-hybi03.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c websockets-ietf.cpp -o websockets-ietf.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c websockets.cpp -o websockets.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c winutils.cpp -o winutils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c http-parser/http_parser.c -o http-parser/http_parser.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c sha1/sha1.c -o sha1/sha1.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c base64/base64.cpp -o base64/base64.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o httpuv.so RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o fs.o gzipdatasource.o http.o httprequest.o httpresponse.o httpuv.o md5.o mime.o socket.o staticpath.o thread.o timegm.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o winutils.o -luv -lpthread -ldl -lrt ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -pthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpftgIzC/R.INSTALL3c0d06225429e3/httpuv/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-httpuv/00new/httpuv/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httpuv) * installing *source* package ‘vsn’ ... ** this is package ‘vsn’ version ‘3.74.0’ ** package ‘vsn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYjEqd0/R.INSTALL3c24532e473fba/vsn/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vsn.c -o vsn.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vsn2.c -o vsn2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o vsn.so init.o vsn.o vsn2.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYjEqd0/R.INSTALL3c24532e473fba/vsn/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-vsn/00new/vsn/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vsn) * installing *source* package ‘sass’ ... ** this is package ‘sass’ version ‘0.4.9’ ** package ‘sass’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /home/hornik/tmp/R-d-clang-xtra/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpenVbCG/R.INSTALL3c011c39c298bd/sass/src' /home/hornik/tmp/R-d-clang-xtra/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libsass/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c compile.c -o compile.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libsass/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cpp -o init.o MAKEFLAGS= CC="clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer" CFLAGS="-g -O3 -Wall -pedantic" CXX="clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17" AR="ar" LDFLAGS="-Wl,-O1" make -C libsass make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpenVbCG/R.INSTALL3c011c39c298bd/sass/src/libsass' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -O2 -I ./include -fPIC -c -o src/cencode.o src/cencode.c clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast.o src/ast.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_values.o src/ast_values.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_supports.o src/ast_supports.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_cmp.o src/ast_sel_cmp.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_unify.o src/ast_sel_unify.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_super.o src/ast_sel_super.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_weave.o src/ast_sel_weave.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_selectors.o src/ast_selectors.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/context.o src/context.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/constants.o src/constants.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_utils.o src/fn_utils.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_miscs.o src/fn_miscs.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_maps.o src/fn_maps.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_lists.o src/fn_lists.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_colors.o src/fn_colors.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_numbers.o src/fn_numbers.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_strings.o src/fn_strings.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_selectors.o src/fn_selectors.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/color_maps.o src/color_maps.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/environment.o src/environment.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_fwd_decl.o src/ast_fwd_decl.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/bind.o src/bind.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/file.o src/file.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/util.o src/util.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/util_string.o src/util_string.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/json.o src/json.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/units.o src/units.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/values.o src/values.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/plugins.o src/plugins.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/source.o src/source.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/position.o src/position.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/lexer.o src/lexer.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/parser.o src/parser.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/parser_selectors.o src/parser_selectors.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/prelexer.o src/prelexer.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/eval.o src/eval.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/eval_selectors.o src/eval_selectors.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/expand.o src/expand.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/listize.o src/listize.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/cssize.o src/cssize.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/extender.o src/extender.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/extension.o src/extension.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/stylesheet.o src/stylesheet.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/output.o src/output.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/inspect.o src/inspect.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/emitter.o src/emitter.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/check_nesting.o src/check_nesting.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/remove_placeholders.o src/remove_placeholders.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass.o src/sass.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_values.o src/sass_values.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_context.o src/sass_context.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_functions.o src/sass_functions.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass2scss.o src/sass2scss.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/backtrace.o src/backtrace.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/operators.o src/operators.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast2c.o src/ast2c.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/c2ast.o src/c2ast.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/to_value.o src/to_value.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/source_map.o src/source_map.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/error_handling.o src/error_handling.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/memory/allocator.o src/memory/allocator.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/memory/shared_ptr.o src/memory/shared_ptr.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/utf8_string.o src/utf8_string.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/base64vlq.o src/base64vlq.cpp mkdir lib ar rcvs lib/libsass.a src/cencode.o src/ast.o src/ast_values.o src/ast_supports.o src/ast_sel_cmp.o src/ast_sel_unify.o src/ast_sel_super.o src/ast_sel_weave.o src/ast_selectors.o src/context.o src/constants.o src/fn_utils.o src/fn_miscs.o src/fn_maps.o src/fn_lists.o src/fn_colors.o src/fn_numbers.o src/fn_strings.o src/fn_selectors.o src/color_maps.o src/environment.o src/ast_fwd_decl.o src/bind.o src/file.o src/util.o src/util_string.o src/json.o src/units.o src/values.o src/plugins.o src/source.o src/position.o src/lexer.o src/parser.o src/parser_selectors.o src/prelexer.o src/eval.o src/eval_selectors.o src/expand.o src/listize.o src/cssize.o src/extender.o src/extension.o src/stylesheet.o src/output.o src/inspect.o src/emitter.o src/check_nesting.o src/remove_placeholders.o src/sass.o src/sass_values.o src/sass_context.o src/sass_functions.o src/sass2scss.o src/backtrace.o src/operators.o src/ast2c.o src/c2ast.o src/to_value.o src/source_map.o src/error_handling.o src/memory/allocator.o src/memory/shared_ptr.o src/utf8_string.o src/base64vlq.o a - src/cencode.o a - src/ast.o a - src/ast_values.o a - src/ast_supports.o a - src/ast_sel_cmp.o a - src/ast_sel_unify.o a - src/ast_sel_super.o a - src/ast_sel_weave.o a - src/ast_selectors.o a - src/context.o a - src/constants.o a - src/fn_utils.o a - src/fn_miscs.o a - src/fn_maps.o a - src/fn_lists.o a - src/fn_colors.o a - src/fn_numbers.o a - src/fn_strings.o a - src/fn_selectors.o a - src/color_maps.o a - src/environment.o a - src/ast_fwd_decl.o a - src/bind.o a - src/file.o a - src/util.o a - src/util_string.o a - src/json.o a - src/units.o a - src/values.o a - src/plugins.o a - src/source.o a - src/position.o a - src/lexer.o a - src/parser.o a - src/parser_selectors.o a - src/prelexer.o a - src/eval.o a - src/eval_selectors.o a - src/expand.o a - src/listize.o a - src/cssize.o a - src/extender.o a - src/extension.o a - src/stylesheet.o a - src/output.o a - src/inspect.o a - src/emitter.o a - src/check_nesting.o a - src/remove_placeholders.o a - src/sass.o a - src/sass_values.o a - src/sass_context.o a - src/sass_functions.o a - src/sass2scss.o a - src/backtrace.o a - src/operators.o a - src/ast2c.o a - src/c2ast.o a - src/to_value.o a - src/source_map.o a - src/error_handling.o a - src/memory/allocator.o a - src/memory/shared_ptr.o a - src/utf8_string.o a - src/base64vlq.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpenVbCG/R.INSTALL3c011c39c298bd/sass/src/libsass' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sass.so compile.o init.o ./libsass/lib/libsass.a -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpenVbCG/R.INSTALL3c011c39c298bd/sass/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sass/00new/sass/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sass) begin installing package ‘bslib’ * installing *source* package ‘IRanges’ ... ** this is package ‘IRanges’ version ‘2.40.1’ ** package ‘IRanges’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuYqXEH/R.INSTALL3c0da4295120c1/IRanges/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c CompressedAtomicList_utils.c -o CompressedAtomicList_utils.o In file included from CompressedAtomicList_utils.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o In file included from CompressedIRangesList_class.c:4: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c CompressedList_class.c -o CompressedList_class.o In file included from CompressedList_class.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Grouping_class.c -o Grouping_class.o In file included from Grouping_class.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IPosRanges_comparison.c -o IPosRanges_comparison.o In file included from IPosRanges_comparison.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_class.c -o IRanges_class.o In file included from IRanges_class.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_constructor.c -o IRanges_constructor.o In file included from IRanges_constructor.c:4: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c NCList.c -o NCList.o In file included from NCList.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void NCList.c:114:56: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 114 | static NCListWalkingStackElt *pop_NCListWalkingStackElt() | ^ | void NCList.c:122:57: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 122 | static NCListWalkingStackElt *peek_NCListWalkingStackElt() | ^ | void NCList.c:127:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 127 | static void extend_NCList_walking_stack() | ^ | void NCList.c:172:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 172 | static const NCList *move_to_right_uncle() | ^ | void NCList.c:225:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 225 | static const NCList *next_bottom_up() | ^ | void NCList.c:356:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 356 | SEXP C_new_NCList() | ^ | void NCList.c:446:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 446 | static void extend_NCList_building_stack() | ^ | void NCList.c:202:22: warning: unused function 'next_top_down' [-Wunused-function] 202 | static const NCList *next_top_down(const NCList *nclist) | ^~~~~~~~~~~~~ NCList.c:1173:13: warning: function 'NCList_get_y_overlaps_rec' is not needed and will not be emitted [-Wunneeded-internal-declaration] 1173 | static void NCList_get_y_overlaps_rec(const NCList *x_nclist, | ^~~~~~~~~~~~~~~~~~~~~~~~~ 10 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_IRanges.c -o R_init_IRanges.o In file included from R_init_IRanges.c:1: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Ranges_class.c -o Ranges_class.o In file included from Ranges_class.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RleViews_utils.c -o RleViews_utils.o In file included from RleViews_utils.c:1: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SimpleIRangesList_class.c -o SimpleIRangesList_class.o In file included from SimpleIRangesList_class.c:4: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c coverage_methods.c -o coverage_methods.o In file included from coverage_methods.c:11: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c extractListFragments.c -o extractListFragments.o In file included from extractListFragments.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c inter_range_methods.c -o inter_range_methods.o In file included from inter_range_methods.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o IRanges.so CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IPosRanges_comparison.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o RleViews_utils.o S4Vectors_stubs.o SimpleIRangesList_class.o coverage_methods.o extractListFragments.o inter_range_methods.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuYqXEH/R.INSTALL3c0da4295120c1/IRanges/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-IRanges/00new/IRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘drop’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘IRanges’ Creating a generic function for ‘chartr’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘toupper’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘tolower’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘sub’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘gsub’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘startsWith’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘endsWith’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘IRanges’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRanges) begin installing package ‘XVector’ begin installing package ‘S4Arrays’ begin installing package ‘GenomeInfoDb’ begin installing package ‘Spectra’ * installing *source* package ‘bslib’ ... ** this is package ‘bslib’ version ‘0.8.0’ ** package ‘bslib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bslib) begin installing package ‘shiny’ begin installing package ‘rmarkdown’ * installing *source* package ‘GenomeInfoDb’ ... ** this is package ‘GenomeInfoDb’ version ‘1.42.1’ ** package ‘GenomeInfoDb’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomeInfoDb) * installing *source* package ‘rmarkdown’ ... ** this is package ‘rmarkdown’ version ‘2.29’ ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmarkdown) begin installing package ‘htmlwidgets’ * installing *source* package ‘XVector’ ... ** this is package ‘XVector’ version ‘0.46.0’ ** package ‘XVector’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppAKDmv/R.INSTALL3c296c3feede8a/XVector/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_stubs.c -o IRanges_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o In file included from Ocopy_byteblocks.c:1: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RDS_random_access.c -o RDS_random_access.o In file included from RDS_random_access.c:7: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void RDS_random_access.c:793:11: warning: variable 'x_type' set but not used [-Wunused-but-set-variable] 793 | SEXPTYPE x_type; | ^ RDS_random_access.c:796:18: warning: unused variable 'ans' [-Wunused-variable] 796 | SEXP subscript, ans; | ^~~ 3 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_XVector.c -o R_init_XVector.o In file included from R_init_XVector.c:1: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SharedDouble_class.c -o SharedDouble_class.o In file included from SharedDouble_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SharedInteger_class.c -o SharedInteger_class.o In file included from SharedInteger_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SharedRaw_class.c -o SharedRaw_class.o In file included from SharedRaw_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void SharedRaw_class.c:396:13: warning: variable 'src_tag' set but not used [-Wunused-but-set-variable] 396 | SEXP dest, src_tag; | ^ 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SharedVector_class.c -o SharedVector_class.o In file included from SharedVector_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void SharedVector_class.c:69:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 69 | SEXP externalptr_new() | ^ | void SharedVector_class.c:110:31: warning: format specifies type 'void *' but the argument has type 'SEXP' (aka 'struct SEXPREC *') [-Wformat-pedantic] 110 | Rprintf(" x address: %p\n", x); | ~~ ^ SharedVector_class.c:114:41: warning: format specifies type 'void *' but the argument has type 'SEXP' (aka 'struct SEXPREC *') [-Wformat-pedantic] 114 | Rprintf(" R_ExternalPtrTag(x): %p\n", s); | ~~ ^ SharedVector_class.c:118:47: warning: format specifies type 'void *' but the argument has type 'SEXP' (aka 'struct SEXPREC *') [-Wformat-pedantic] 118 | Rprintf(" R_ExternalPtrProtected(x): %p\n", s); | ~~ ^ 5 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XDouble_class.c -o XDouble_class.o In file included from XDouble_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XInteger_class.c -o XInteger_class.o In file included from XInteger_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XRawList_comparison.c -o XRawList_comparison.o In file included from XRawList_comparison.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XRaw_class.c -o XRaw_class.o In file included from XRaw_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XVectorList_class.c -o XVectorList_class.o In file included from XVectorList_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XVector_class.c -o XVector_class.o In file included from XVector_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c io_utils.c -o io_utils.o In file included from io_utils.c:7: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c slice_methods.c -o slice_methods.o In file included from slice_methods.c:1: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vector_copy.c -o vector_copy.o In file included from vector_copy.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c view_summarization_methods.c -o view_summarization_methods.o In file included from view_summarization_methods.c:1: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o XVector.so IRanges_stubs.o Ocopy_byteblocks.o RDS_random_access.o R_init_XVector.o S4Vectors_stubs.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XDouble_class.o XInteger_class.o XRawList_comparison.o XRaw_class.o XVectorList_class.o XVector_class.o io_utils.o slice_methods.o vector_copy.o view_summarization_methods.o -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppAKDmv/R.INSTALL3c296c3feede8a/XVector/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-XVector/00new/XVector/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (XVector) begin installing package ‘GenomicRanges’ * installing *source* package ‘S4Arrays’ ... ** this is package ‘S4Arrays’ version ‘1.6.0’ ** package ‘S4Arrays’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphuC9Io/R.INSTALL3c296f292da59e/S4Arrays/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_S4Arrays.c -o R_init_S4Arrays.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c abind.c -o abind.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c array_selection.c -o array_selection.o array_selection.c:91:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 91 | static char *errmsg_buf() | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dim_tuning_utils.c -o dim_tuning_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowsum.c -o rowsum.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o S4Arrays.so R_init_S4Arrays.o S4Vectors_stubs.o abind.o array_selection.o dim_tuning_utils.o rowsum.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphuC9Io/R.INSTALL3c296f292da59e/S4Arrays/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-S4Arrays/00new/S4Arrays/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘rowsum’ in package ‘S4Arrays’ Creating a new generic function for ‘abind’ in package ‘S4Arrays’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (S4Arrays) begin installing package ‘SparseArray’ * installing *source* package ‘Spectra’ ... ** this is package ‘Spectra’ version ‘1.16.0’ ** package ‘Spectra’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘entropy’ in package ‘Spectra’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Spectra) * installing *source* package ‘htmlwidgets’ ... ** this is package ‘htmlwidgets’ version ‘1.6.4’ ** package ‘htmlwidgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmlwidgets) begin installing package ‘DT’ begin installing package ‘plotly’ * installing *source* package ‘DT’ ... ** this is package ‘DT’ version ‘0.33’ ** package ‘DT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DT) * installing *source* package ‘Rhdf5lib’ ... ** this is package ‘Rhdf5lib’ version ‘1.28.0’ ** package ‘Rhdf5lib’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to enable C11 features... none needed checking whether the compiler supports GNU C++... yes checking whether clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes checking for clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... none needed COMPILER = clang-19 checking whether C compiler accepts -w... yes checking whether to use -Wl,-rpath setting... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for zlib.h... yes ON_BUILDER=false ON_BUILDER=false checking for szlib.h... yes checking for libaec.h... yes checking for SZ_BufftoBuffCompress in -lsz... yes checking for aec_buffer_encode in -lsz... yes checking for curl/curl.h... yes checking for openssl/evp.h... yes checking for openssl/hmac.h... yes checking for openssl/sha.h... yes checking for curl_global_init in -lcurl... yes checking for EVP_sha256 in -lcrypto... yes S3_VFD=--enable-ros3-vfd configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src' gunzip -dc hdf5small_cxx_hl_1.10.7.tar.gz | tar xf -; cd hdf5; \ ./configure --with-pic --enable-shared=no --enable-cxx --enable-hl \ --enable-tests=no --enable-tools=no \ --with-szlib=yes --with-zlib=yes \ --enable-ros3-vfd \ --enable-sharedlib-rpath \ CC='clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer' CXX='clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17' \ CPPFLAGS='-I/usr/local/include' \ CFLAGS='-g -O3 -Wall -pedantic -w -fpic' \ CXXFLAGS='-w -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -fpic' \ AR='ar' RANLIB='ranlib' \ LDFLAGS='-Wl,-O1'; \ make lib checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking shell variables initial values... done checking if basename works... yes checking if xargs works... yes checking for cached host... none checking for config x86_64-pc-linux-gnu... no checking for config x86_64-pc-linux-gnu... no checking for config pc-linux-gnu... no checking for config pc-linux-gnu... no checking for config x86_64-linux-gnu... no checking for config x86_64-linux-gnu... no checking for config x86_64-pc... no checking for config linux-gnu... found compiler 'clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer' is clang-19.1.6 compiler 'gfortran' is GNU gfortran-14.2.0 compiler 'clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17' is clang-19.1.6 checking for config ./config/site-specific/host-anduin2... no checking for clang sanitizer checks... checking build mode... production checking for gcc... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to enable C11 features... none needed checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer... gcc3 checking if unsupported combinations of configure options are allowed... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for off_t... yes checking for size_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking whether byte ordering is bigendian... no checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of unsigned... 4 checking size of long... 8 checking size of long long... 8 checking size of __int64... 0 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of __float128... 16 checking size of _Quad... 0 checking for quadmath.h... no checking maximum decimal precision for C... 21 checking if Fortran interface enabled... no checking whether the compiler supports GNU C++... yes checking whether clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes checking for clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... none needed checking dependency style of clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17... gcc3 checking how to run the C++ preprocessor... clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -E checking if c++ interface enabled... yes checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 needs old style header files in includes... no checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 can handle namespaces... yes checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 can handle static cast... yes checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 has offsetof extension... yes checking if the high-level library is enabled... yes checking whether make sets $(MAKE)... (cached) yes checking for tr... /usr/bin/tr checking if srcdir= and time commands work together... yes checking if Java JNI interface enabled... no checking if building tests is disabled... Building HDF5 tests is disabled checking if building tools is disabled... Building HDF5 tools is disabled checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3145728 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer supports -fno-rtti -fno-exceptions... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to produce PIC... -fPIC -DPIC checking if clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer PIC flag -fPIC -DPIC works... yes checking if clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer static flag -static works... no checking if clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer supports -c -o file.o... yes checking if clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer supports -c -o file.o... (cached) yes checking whether the clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... yes checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -E checking for ld used by clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to produce PIC... -fPIC -DPIC checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 PIC flag -fPIC -DPIC works... yes checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 static flag -static works... no checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 supports -c -o file.o... yes checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 supports -c -o file.o... (cached) yes checking whether the clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if we should install only statically linked executables... no checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes checking for ceil in -lm... yes checking for dlopen in -ldl... yes checking for egrep... (cached) /usr/bin/grep -E checking for sys/resource.h... yes checking for sys/time.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/ioctl.h... yes checking for sys/stat.h... (cached) yes checking for sys/socket.h... yes checking for sys/types.h... 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checking size of uint_least64_t... 8 checking size of int_fast64_t... 8 checking size of uint_fast64_t... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of off_t... 8 checking size of bool... 1 checking size of time_t... 8 checking if dev_t is scalar... yes checking for dmalloc library... suppressed checking for zlib.h... yes checking for compress2 in -lz... yes checking for compress2... yes checking for szlib.h... yes checking for libaec.h... yes checking for aec_encode in -laec... yes checking for SZ_BufftoBuffCompress in -lsz... yes checking for szlib encoder... no checking for thread safe support... no checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer options needed to detect all undeclared functions... none needed checking whether CLOCK_MONOTONIC is declared... yes checking for tm_gmtoff in struct tm... yes checking for global timezone variable... yes checking for st_blocks in struct stat... no checking for _getvideoconfig... no checking for gettextinfo... no checking for GetConsoleScreenBufferInfo... no checking for getpwuid... yes checking for _scrsize... no checking for ioctl... yes checking for struct videoconfig... no checking for struct text_info... no checking for TIOCGWINSZ... yes checking for TIOCGETD... yes checking for library containing clock_gettime... none required checking for alarm... yes checking for clock_gettime... yes checking for difftime... yes checking for fcntl... yes checking for flock... yes checking for fork... yes checking for frexpf... yes checking for frexpl... yes checking for gethostname... yes checking for getrusage... yes checking for gettimeofday... yes checking for lstat... yes checking for rand_r... yes checking for random... yes checking for setsysinfo... no checking for signal... yes checking for longjmp... yes checking for setjmp... yes checking for siglongjmp... yes checking for sigsetjmp... no checking for sigprocmask... yes checking for snprintf... yes checking for srandom... yes checking for strdup... yes checking for symlink... yes checking for system... yes checking for strtoll... yes checking for strtoull... yes checking for tmpfile... yes checking for asprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for waitpid... yes checking for roundf... yes checking for lroundf... yes checking for llroundf... yes checking for round... yes checking for lround... yes checking for llround... yes checking for an ANSI C-conforming const... yes checking if the compiler understands __inline__... yes checking if the compiler understands __inline... yes checking if the compiler understands inline... yes checking for __attribute__ extension... yes checking for __func__ extension... yes checking for __FUNCTION__ extension... yes checking for C99 designated initialization support... yes checking how to print long long... %ld and %lu checking enable debugging symbols... no checking enable asserts... no checking enable developer warnings... no checking profiling... no checking optimization level... high checking enable file locking... best-effort checking for internal debug output... none checking whether function stack tracking is enabled... no checking for API tracing... no checking whether a memory checking tool will be used... no checking whether internal memory allocation sanity checking is used... no checking for parallel support files... skipped checking whether O_DIRECT is declared... yes checking for posix_memalign... yes checking if the direct I/O virtual file driver (VFD) is enabled... no checking if the Mirror virtual file driver (VFD) is enabled... no checking for curl/curl.h... yes checking for openssl/evp.h... yes checking for openssl/hmac.h... yes checking for openssl/sha.h... yes checking for curl_global_init in -lcurl... yes checking for EVP_sha256 in -lcrypto... yes checking if the Read-Only S3 virtual file driver (VFD) is enabled... yes checking for libhdfs... suppressed checking for custom examples path definition... ${prefix}/share/hdf5_examples checking for custom plugin default path definition... /usr/local/hdf5/lib/plugin checking whether exception handling functions is checked during data conversions... yes checking whether data accuracy is guaranteed during data conversions... yes checking if the machine has window style path name... no checking if using special algorithm to convert long double to (unsigned) long values... no checking if using special algorithm to convert (unsigned) long to long double values... no checking if correctly converting long double to (unsigned) long long values... yes checking if correctly converting (unsigned) long long to long double values... yes checking if the system is IBM ppc64le and cannot correctly convert some long double values... no checking additional programs should be built... no checking if deprecated public symbols are available... yes checking which version of public symbols to use by default... v110 checking whether to perform strict file format checks... no checking for pread... yes checking for pwrite... yes checking whether to use pread/pwrite instead of read/write in certain VFDs... yes checking whether to have library information embedded in the executables... yes checking if alignment restrictions are strictly enforced... no configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/libhdf5.settings config.status: creating Makefile config.status: creating src/Makefile config.status: creating utils/Makefile config.status: creating utils/mirror_vfd/Makefile config.status: creating bin/h5cc config.status: creating bin/Makefile config.status: creating c++/Makefile config.status: creating c++/src/Makefile config.status: creating c++/src/h5c++ config.status: creating hl/Makefile config.status: creating hl/src/Makefile config.status: creating hl/c++/Makefile config.status: creating hl/c++/src/Makefile config.status: creating src/H5config.h config.status: executing pubconf commands creating src/H5pubconf.h Post process src/libhdf5.settings config.status: executing depfiles commands config.status: executing libtool commands config.status: executing .classes commands SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.10.7 Configured on: Mon Jan 13 16:13:56 CET 2025 Configured by: hornik@anduin2 Host system: x86_64-pc-linux-gnu Uname information: Linux anduin2 6.11.10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1 (2024-11-23) x86_64 GNU/Linux Byte sex: little-endian Installation point: /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hdf5 Compiling Options: ------------------ Build Mode: production Debugging Symbols: no Asserts: no Profiling: no Optimization Level: high Linking Options: ---------------- Libraries: static Statically Linked Executables: LDFLAGS: -Wl,-O1 H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lcrypto -lcurl -lsz -laec -lz -ldl -lm Archiver: ar AR_FLAGS: cr Ranlib: ranlib Languages: ---------- C: yes C Compiler: /usr/bin/clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer ( 19.1.6) CPPFLAGS: -I/usr/local/include H5_CPPFLAGS: -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -DNDEBUG -UH5_DEBUG_API AM_CPPFLAGS: C Flags: -g -O3 -Wall -pedantic -w -fpic H5 C Flags: -std=c99 -Warray-bounds -Wcast-qual -Wconversion -Wdouble-promotion -Wformat=2 -Wframe-larger-than=16384 -Wimplicit-fallthrough -Wno-c++-compat -Wno-format-nonliteral -Wnull-dereference -Wunused-const-variable -Wwrite-strings -Wvolatile-register-var -Wno-self-assign-overloaded -Wno-unknown-warning-option -Wno-missing-noreturn -O3 -Werror=bad-function-cast -Werror=implicit-function-declaration -Werror=incompatible-pointer-types -Werror=missing-declarations -Werror=packed -Werror=shadow -Werror=switch -Wno-error=incompatible-pointer-types-discards-qualifiers -Wunused-function -Wunused-variable -Wunused-parameter -Wcast-align -Wformat AM C Flags: Shared C Library: no Static C Library: yes Fortran: no C++: yes C++ Compiler: /usr/bin/clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 C++ Flags: -w -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -fpic H5 C++ Flags: -std=c++11 -Warray-bounds -Wcast-qual -Wconversion -Wdouble-promotion -Wformat=2 -Wframe-larger-than=16384 -Wimplicit-fallthrough -Wno-c++-compat -Wno-format-nonliteral -Wnull-dereference -Wunused-const-variable -Wwrite-strings -Wvolatile-register-var -Wno-self-assign-overloaded -Wno-unknown-warning-option -O3 -Werror=bad-function-cast -Werror=implicit-function-declaration -Werror=incompatible-pointer-types -Werror=missing-declarations -Werror=packed -Werror=shadow -Werror=switch -Wno-error=incompatible-pointer-types-discards-qualifiers -Wunused-function -Wunused-variable -Wunused-parameter -Wcast-align -Wformat AM C++ Flags: Shared C++ Library: no Static C++ Library: yes Java: no Features: --------- Parallel HDF5: no Parallel Filtered Dataset Writes: no Large Parallel I/O: no High-level library: yes Build HDF5 Tests: no Build HDF5 Tools: no Threadsafety: no Default API mapping: v110 With deprecated public symbols: yes I/O filters (external): deflate(zlib),szip(no encoder) MPE: no Direct VFD: no Mirror VFD: no (Read-Only) S3 VFD: yes (Read-Only) HDFS VFD: no dmalloc: no Packages w/ extra debug output: none API tracing: no Using memory checker: no Memory allocation sanity checks: no Function stack tracing: no Use file locking: best-effort Strict file format checks: no Optimization instrumentation: no make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5' for d in src . c++ hl; do \ if test $d != .; then \ (cd $d && make lib) || exit 1; \ fi; \ done make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src' make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src' CC H5.lo CC H5checksum.lo CC H5dbg.lo CC H5system.lo CC H5timer.lo CC H5trace.lo CC H5A.lo CC H5Abtree2.lo CC H5Adense.lo CC H5Adeprec.lo CC H5Aint.lo CC H5Atest.lo CC H5AC.lo CC H5ACdbg.lo CC H5ACproxy_entry.lo CC H5B.lo CC H5Bcache.lo CC H5Bdbg.lo CC H5B2.lo CC H5B2cache.lo CC H5B2dbg.lo CC H5B2hdr.lo CC H5B2int.lo CC H5B2internal.lo CC H5B2leaf.lo CC H5B2stat.lo CC H5B2test.lo CC H5C.lo CC H5Cdbg.lo CC H5Cepoch.lo CC H5Cimage.lo CC H5Clog.lo CC H5Clog_json.lo CC H5Clog_trace.lo CC H5Cprefetched.lo CC H5Cquery.lo CC H5Ctag.lo CC H5Ctest.lo CC H5CS.lo CC H5CX.lo CC H5D.lo CC H5Dbtree.lo CC H5Dbtree2.lo CC H5Dchunk.lo CC H5Dcompact.lo CC H5Dcontig.lo CC H5Ddbg.lo CC H5Ddeprec.lo CC H5Dearray.lo CC H5Defl.lo CC H5Dfarray.lo CC H5Dfill.lo CC H5Dint.lo CC H5Dio.lo CC H5Dlayout.lo CC H5Dnone.lo CC H5Doh.lo CC H5Dscatgath.lo CC H5Dselect.lo CC H5Dsingle.lo CC H5Dtest.lo CC H5Dvirtual.lo CC H5E.lo CC H5Edeprec.lo CC H5Eint.lo CC H5EA.lo CC H5EAcache.lo CC H5EAdbg.lo CC H5EAdblkpage.lo CC H5EAdblock.lo CC H5EAhdr.lo CC H5EAiblock.lo CC H5EAint.lo CC H5EAsblock.lo CC H5EAstat.lo CC H5EAtest.lo CC H5F.lo CC H5Faccum.lo CC H5Fcwfs.lo CC H5Fdbg.lo CC H5Fdeprec.lo CC H5Fefc.lo CC H5Ffake.lo CC H5Fint.lo CC H5Fio.lo CC H5Fmount.lo CC H5Fquery.lo CC H5Fsfile.lo CC H5Fspace.lo CC H5Fsuper.lo CC H5Fsuper_cache.lo CC H5Ftest.lo CC H5FA.lo CC H5FAcache.lo CC H5FAdbg.lo CC H5FAdblock.lo CC H5FAdblkpage.lo CC H5FAhdr.lo CC H5FAint.lo CC H5FAstat.lo CC H5FAtest.lo CC H5FD.lo CC H5FDcore.lo CC H5FDfamily.lo CC H5FDhdfs.lo CC H5FDint.lo CC H5FDlog.lo CC H5FDmulti.lo CC H5FDsec2.lo CC H5FDspace.lo CC H5FDsplitter.lo CC H5FDstdio.lo CC H5FDtest.lo CC H5FL.lo CC H5FO.lo CC H5FS.lo CC H5FScache.lo CC H5FSdbg.lo CC H5FSint.lo CC H5FSsection.lo CC H5FSstat.lo CC H5FStest.lo CC H5G.lo CC H5Gbtree2.lo CC H5Gcache.lo CC H5Gcompact.lo CC H5Gdense.lo CC H5Gdeprec.lo CC H5Gent.lo CC H5Gint.lo CC H5Glink.lo CC H5Gloc.lo CC H5Gname.lo CC H5Gnode.lo CC H5Gobj.lo CC H5Goh.lo CC H5Groot.lo CC H5Gstab.lo CC H5Gtest.lo CC H5Gtraverse.lo CC H5HF.lo CC H5HFbtree2.lo CC H5HFcache.lo CC H5HFdbg.lo CC H5HFdblock.lo CC H5HFdtable.lo CC H5HFhdr.lo CC H5HFhuge.lo CC H5HFiblock.lo CC H5HFiter.lo CC H5HFman.lo CC H5HFsection.lo CC H5HFspace.lo CC H5HFstat.lo CC H5HFtest.lo CC H5HFtiny.lo CC H5HG.lo CC H5HGcache.lo CC H5HGdbg.lo CC H5HGquery.lo CC H5HL.lo CC H5HLcache.lo CC H5HLdbg.lo CC H5HLint.lo CC H5HLprfx.lo CC H5HLdblk.lo CC H5HP.lo CC H5I.lo CC H5Itest.lo CC H5L.lo CC H5Lexternal.lo CC H5make_libsettings.o CCLD H5make_libsettings LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo -Wl,-O1 | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5make_libsettings > H5lib_settings.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5lib_settings.c ; exit 1) CC H5lib_settings.lo CC H5MF.lo CC H5MFaggr.lo CC H5MFdbg.lo CC H5MFsection.lo CC H5MM.lo CC H5MP.lo CC H5MPtest.lo CC H5O.lo CC H5Odeprec.lo CC H5Oainfo.lo CC H5Oalloc.lo CC H5Oattr.lo CC H5Oattribute.lo CC H5Obogus.lo CC H5Obtreek.lo CC H5Ocache.lo CC H5Ocache_image.lo CC H5Ochunk.lo CC H5Ocont.lo CC H5Ocopy.lo CC H5Odbg.lo CC H5Odrvinfo.lo CC H5Odtype.lo CC H5Oefl.lo CC H5Ofill.lo CC H5Oflush.lo CC H5Ofsinfo.lo CC H5Oginfo.lo CC H5Oint.lo CC H5Olayout.lo CC H5Olinfo.lo CC H5Olink.lo CC H5Omessage.lo CC H5Omtime.lo CC H5Oname.lo CC H5Onull.lo CC H5Opline.lo CC H5Orefcount.lo CC H5Osdspace.lo CC H5Oshared.lo CC H5Oshmesg.lo CC H5Ostab.lo CC H5Otest.lo CC H5Ounknown.lo CC H5P.lo CC H5Pacpl.lo CC H5Pdapl.lo CC H5Pdcpl.lo CC H5Pdeprec.lo CC H5Pdxpl.lo CC H5Pencdec.lo CC H5Pfapl.lo CC H5Pfcpl.lo CC H5Pfmpl.lo CC H5Pgcpl.lo CC H5Pint.lo CC H5Plapl.lo CC H5Plcpl.lo CC H5Pocpl.lo CC H5Pocpypl.lo CC H5Pstrcpl.lo CC H5Ptest.lo CC H5PB.lo CC H5PL.lo CC H5PLint.lo CC H5PLpath.lo CC H5PLplugin_cache.lo CC H5R.lo CC H5Rint.lo CC H5Rdeprec.lo CC H5UC.lo CC H5RS.lo CC H5S.lo CC H5Sall.lo CC H5Sdbg.lo CC H5Shyper.lo CC H5Snone.lo CC H5Spoint.lo CC H5Sselect.lo CC H5Stest.lo CC H5SL.lo CC H5SM.lo CC H5SMbtree2.lo CC H5SMcache.lo CC H5SMmessage.lo CC H5SMtest.lo CC H5ST.lo CC H5T.lo CC H5Tarray.lo CC H5Tbit.lo CC H5Tcommit.lo CC H5Tcompound.lo CC H5Tconv.lo CC H5Tcset.lo CC H5Tdbg.lo CC H5Tdeprec.lo CC H5Tenum.lo CC H5Tfields.lo CC H5Tfixed.lo CC H5Tfloat.lo CC H5detect.o CCLD H5detect LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo -Wl,-O1 | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5detect > H5Tinit.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5Tinit.c ; exit 1) CC H5Tinit.lo CC H5Tnative.lo CC H5Toffset.lo CC H5Toh.lo CC H5Topaque.lo CC H5Torder.lo CC H5Tpad.lo CC H5Tprecis.lo CC H5Tstrpad.lo CC H5Tvisit.lo CC H5Tvlen.lo CC H5TS.lo CC H5VM.lo CC H5WB.lo CC H5Z.lo CC H5Zdeflate.lo CC H5Zfletcher32.lo CC H5Znbit.lo CC H5Zshuffle.lo CC H5Zscaleoffset.lo CC H5Zszip.lo CC H5Ztrans.lo CC H5FDros3.lo CC H5FDs3comms.lo CCLD libhdf5.la make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src' make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src' make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++' make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++' make[4]: Nothing to be done for 'build-lib'. make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++' + cd src + make lib make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src' make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src' CXX H5Exception.lo CXX H5IdComponent.lo CXX H5DataSpace.lo CXX H5PropList.lo CXX H5Library.lo CXX H5FaccProp.lo CXX H5FcreatProp.lo CXX H5LcreatProp.lo CXX H5LaccProp.lo CXX H5DaccProp.lo CXX H5DxferProp.lo CXX H5DcreatProp.lo CXX H5Location.lo CXX H5AbstractDs.lo CXX H5Attribute.lo CXX H5Object.lo CXX H5OcreatProp.lo CXX H5DataType.lo CXX H5AtomType.lo CXX H5PredType.lo CXX H5EnumType.lo CXX H5IntType.lo CXX H5FloatType.lo CXX H5StrType.lo CXX H5ArrayType.lo CXX H5VarLenType.lo CXX H5CompType.lo CXX H5DataSet.lo CXX H5CommonFG.lo CXX H5Group.lo CXX H5File.lo CXXLD libhdf5_cpp.la make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src' make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++' make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl' make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl' make[4]: Nothing to be done for 'build-lib'. make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl' + cd src + make lib make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl/src' make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl/src' CC H5DO.lo CC H5DS.lo CC H5IM.lo CC H5LT.lo CC H5LTanalyze.lo CC H5LTparse.lo CC H5PT.lo CC H5TB.lo CC H5LD.lo CCLD libhdf5_hl.la make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl/src' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl/src' + cd c++ + make lib make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl/c++' make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl/c++' make[5]: Nothing to be done for 'build-lib'. make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl/c++' + cd src + make lib make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl/c++/src' make[6]: Entering directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl/c++/src' CXX H5PacketTable.lo CXXLD libhdf5_hl_cpp.la make[6]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl/c++/src' make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl/c++/src' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl/c++' make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/hl' make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5' mkdir -p "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/src"/*.h "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/c++/src"/*.h "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/hl/src"/*.h "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/hl/c++/src"/*.h "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/src"/libhdf5.settings "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" mkdir -p "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/src/.libs/libhdf5.a" "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/c++/src/.libs/libhdf5_cpp.a" "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/hl/src/.libs/libhdf5_hl.a" "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/hl/c++/src/.libs/libhdf5_hl_cpp.a" "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rhdf5lib.c -o Rhdf5lib.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Rhdf5lib.so Rhdf5lib.o /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/libhdf5.a -lsz -laec -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rhdf5lib) begin installing package ‘mzR’ * installing *source* package ‘plotly’ ... ** this is package ‘plotly’ version ‘4.10.4’ ** package ‘plotly’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotly) begin installing package ‘mixtools’ * installing *source* package ‘shiny’ ... ** this is package ‘shiny’ version ‘1.10.0’ ** package ‘shiny’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny) * installing *source* package ‘GenomicRanges’ ... ** this is package ‘GenomicRanges’ version ‘1.58.0’ ** package ‘GenomicRanges’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpV6QxjS/R.INSTALL3c2fce34b7ecdb/GenomicRanges/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_stubs.c -o IRanges_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c transcript_utils.c -o transcript_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpV6QxjS/R.INSTALL3c2fce34b7ecdb/GenomicRanges/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-GenomicRanges/00new/GenomicRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomicRanges) begin installing package ‘AnnotationFilter’ * installing *source* package ‘SparseArray’ ... ** this is package ‘SparseArray’ version ‘1.6.0’ ** package ‘SparseArray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2HF075/R.INSTALL3c306f39e2dc30/SparseArray/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ExtendableJaggedArray.c -o ExtendableJaggedArray.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c IRanges_stubs.c -o IRanges_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c OPBufTree.c -o OPBufTree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c R_init_SparseArray.c -o R_init_SparseArray.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c Rvector_summarization.c -o Rvector_summarization.o Rvector_summarization.c:1360:12: warning: unused function 'any_NA_list_elt' [-Wunused-function] 1360 | static int any_NA_list_elt(SEXP x) | ^~~~~~~~~~~~~~~ Rvector_summarization.c:1370:12: warning: unused function 'count_NA_list_elts' [-Wunused-function] 1370 | static int count_NA_list_elts(SEXP x) | ^~~~~~~~~~~~~~~~~~ 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c Rvector_utils.c -o Rvector_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SBT_utils.c -o SBT_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SVT_SparseArray_class.c -o SVT_SparseArray_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_Arith_methods.c -o SparseArray_Arith_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_Compare_methods.c -o SparseArray_Compare_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_Complex_methods.c -o SparseArray_Complex_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_Logic_methods.c -o SparseArray_Logic_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_Math_methods.c -o SparseArray_Math_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_abind.c -o SparseArray_abind.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_aperm.c -o SparseArray_aperm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_dim_tuning.c -o SparseArray_dim_tuning.o SparseArray_dim_tuning.c:141:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 141 | static SEXP make_scalar_lacunar_leaf() | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_matrixStats.c -o SparseArray_matrixStats.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_misc_methods.c -o SparseArray_misc_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_subassignment.c -o SparseArray_subassignment.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_subassignment_OLD.c -o SparseArray_subassignment_OLD.o SparseArray_subassignment_OLD.c:245:19: warning: unused function 'descend_to_bottom_by_coords0' [-Wunused-function] 245 | static inline int descend_to_bottom_by_coords0(SEXP SVT, SEXP SVT0, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_subsetting.c -o SparseArray_subsetting.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_summarization.c -o SparseArray_summarization.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseMatrix_mult.c -o SparseMatrix_mult.o SparseMatrix_mult.c:306:13: warning: unused function 'crossprod2_doubleSV_doublemat' [-Wunused-function] 306 | static void crossprod2_doubleSV_doublemat( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SparseMatrix_mult.c:346:13: warning: unused function 'crossprod2_doublemat_doubleSV' [-Wunused-function] 346 | static void crossprod2_doublemat_doubleSV( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseVec.c -o SparseVec.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseVec_Arith.c -o SparseVec_Arith.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseVec_Compare.c -o SparseVec_Compare.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseVec_Logic.c -o SparseVec_Logic.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseVec_Math.c -o SparseVec_Math.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseVec_dotprod.c -o SparseVec_dotprod.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c XVector_stubs.c -o XVector_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c argcheck_utils.c -o argcheck_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c coerceVector2.c -o coerceVector2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c leaf_utils.c -o leaf_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c randomSparseArray.c -o randomSparseArray.o randomSparseArray.c:42:19: warning: unused function 'binary_find_interval' [-Wunused-function] 42 | static inline int binary_find_interval(double u, | ^~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c readSparseCSV.c -o readSparseCSV.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c rowsum_methods.c -o rowsum_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c sparseMatrix_utils.c -o sparseMatrix_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c test.c -o test.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c thread_control.c -o thread_control.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o SparseArray.so ExtendableJaggedArray.o IRanges_stubs.o OPBufTree.o R_init_SparseArray.o Rvector_summarization.o Rvector_utils.o S4Vectors_stubs.o SBT_utils.o SVT_SparseArray_class.o SparseArray_Arith_methods.o SparseArray_Compare_methods.o SparseArray_Complex_methods.o SparseArray_Logic_methods.o SparseArray_Math_methods.o SparseArray_abind.o SparseArray_aperm.o SparseArray_dim_tuning.o SparseArray_matrixStats.o SparseArray_misc_methods.o SparseArray_subassignment.o SparseArray_subassignment_OLD.o SparseArray_subsetting.o SparseArray_summarization.o SparseMatrix_mult.o SparseVec.o SparseVec_Arith.o SparseVec_Compare.o SparseVec_Logic.o SparseVec_Math.o SparseVec_dotprod.o XVector_stubs.o argcheck_utils.o coerceVector2.o leaf_utils.o randomSparseArray.o readSparseCSV.o rowsum_methods.o sparseMatrix_utils.o test.o thread_control.o -fopenmp -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2HF075/R.INSTALL3c306f39e2dc30/SparseArray/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-SparseArray/00new/SparseArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SparseArray) begin installing package ‘DelayedArray’ * installing *source* package ‘AnnotationFilter’ ... ** this is package ‘AnnotationFilter’ version ‘1.30.0’ ** package ‘AnnotationFilter’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AnnotationFilter) * installing *source* package ‘mixtools’ ... ** this is package ‘mixtools’ version ‘2.0.0’ ** package ‘mixtools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzWpcMW/R.INSTALL3c35223e9d0b7b/mixtools/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDEloc2.c -o KDEloc2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDElocscale.c -o KDElocscale.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDErepeated.c -o KDErepeated.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDErepeatedbw.c -o KDErepeatedbw.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDEsymloc.c -o KDEsymloc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDEsymloc1comp.c -o KDEsymloc1comp.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDEsymloc2.c -o KDEsymloc2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c multinompost.c -o multinompost.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mvwkde.c -o mvwkde.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c new_svalues.c -o new_svalues.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c normpost.c -o normpost.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c npMSL.c -o npMSL.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sd.c -o sd.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c z.c -o z.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o mixtools.so KDEloc2.o KDElocscale.o KDErepeated.o KDErepeatedbw.o KDEsymloc.o KDEsymloc1comp.o KDEsymloc2.o init.o multinompost.o mvwkde.o new_svalues.o normpost.o npMSL.o sd.o z.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzWpcMW/R.INSTALL3c35223e9d0b7b/mixtools/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-mixtools/00new/mixtools/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixtools) * installing *source* package ‘igraph’ ... ** this is package ‘igraph’ version ‘2.1.3’ ** package ‘igraph’ successfully unpacked and MD5 sums checked ** using staged installation libxml2 include directories: -I/usr/include/libxml2 libxml2 library link flags: -lxml2 Using installed GLPK ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdHcVfu/R.INSTALL3c0ec571979d75/igraph/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c cpp11.cpp -o cpp11.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c cpprinterface.cpp -o cpprinterface.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cpp -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rinterface.c -o rinterface.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rinterface_extra.c -o rinterface_extra.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rrandom.c -o rrandom.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c simpleraytracer.cpp -o simpleraytracer.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dgetv0.f -o vendor/arpack/dgetv0.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dlaqrb.f -o vendor/arpack/dlaqrb.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dmout.f -o vendor/arpack/dmout.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dnaitr.f -o vendor/arpack/dnaitr.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dnapps.f -o vendor/arpack/dnapps.o ./vendor/arpack/dnapps.f:342:19: warning: Reference to the procedure 'igraphdvout' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call igraphdvout (logfil, 1, h(i+1,i), ndigit, ^ ./vendor/arpack/dnapps.f:271:13: previous reference to 'igraphdvout' call igraphdvout (logfil, 1, [sigmar], ndigit, ^ ./vendor/arpack/dnapps.f:593:10: warning: Reference to the procedure 'dgemv' has an implicit interface that is distinct from another reference: incompatible dummy argument #10: incompatible dummy data object shapes call dgemv ('N', n, kplusp-i+1, one, v, ldv, ^ ./vendor/arpack/dnapps.f:584:11: previous reference to 'dgemv' & call dgemv ('N', n, kplusp, one, v, ldv, q(1,kev+1), 1, zero, ^ ./vendor/arpack/dnapps.f:624:10: warning: Reference to the procedure 'igraphdvout' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call igraphdvout (logfil, 1, q(kplusp,kev), ndigit, ^ ./vendor/arpack/dnapps.f:271:13: previous reference to 'igraphdvout' call igraphdvout (logfil, 1, [sigmar], ndigit, ^ ./vendor/arpack/dnapps.f:626:10: warning: Reference to the procedure 'igraphdvout' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call igraphdvout (logfil, 1, h(kev+1,kev), ndigit, ^ ./vendor/arpack/dnapps.f:271:13: previous reference to 'igraphdvout' call igraphdvout (logfil, 1, [sigmar], ndigit, ^ flang-new-19 -fpic -g -O2 -c vendor/arpack/dnaup2.f -o vendor/arpack/dnaup2.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dnaupd.f -o vendor/arpack/dnaupd.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dnconv.f -o vendor/arpack/dnconv.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dneigh.f -o vendor/arpack/dneigh.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dneupd.f -o vendor/arpack/dneupd.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dngets.f -o vendor/arpack/dngets.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsaitr.f -o vendor/arpack/dsaitr.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsapps.f -o vendor/arpack/dsapps.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsaup2.f -o vendor/arpack/dsaup2.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsaupd.f -o vendor/arpack/dsaupd.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsconv.f -o vendor/arpack/dsconv.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dseigt.f -o vendor/arpack/dseigt.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsesrt.f -o vendor/arpack/dsesrt.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dseupd.f -o vendor/arpack/dseupd.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsgets.f -o vendor/arpack/dsgets.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsortc.f -o vendor/arpack/dsortc.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsortr.f -o vendor/arpack/dsortr.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dstatn.f -o vendor/arpack/dstatn.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dstats.f -o vendor/arpack/dstats.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dstqrb.f -o vendor/arpack/dstqrb.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dvout.f -o vendor/arpack/dvout.o flang-new-19 -fpic -g -O2 -c vendor/arpack/ivout.f -o vendor/arpack/ivout.o flang-new-19 -fpic -g -O2 -c vendor/arpack/second.f -o vendor/arpack/second.o flang-new-19 -fpic -g -O2 -c vendor/arpack/wrap.f -o vendor/arpack/wrap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/betweenness.c -o vendor/cigraph/src/centrality/betweenness.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/centrality_other.c -o vendor/cigraph/src/centrality/centrality_other.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/centralization.c -o vendor/cigraph/src/centrality/centralization.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/closeness.c -o vendor/cigraph/src/centrality/closeness.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/coreness.c -o vendor/cigraph/src/centrality/coreness.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/eigenvector.c -o vendor/cigraph/src/centrality/eigenvector.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/hub_authority.c -o vendor/cigraph/src/centrality/hub_authority.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/pagerank.c -o vendor/cigraph/src/centrality/pagerank.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack.cpp -o vendor/cigraph/src/centrality/prpack.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_base_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_base_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_igraph_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_igraph_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_preprocessed_ge_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_ge_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_preprocessed_gs_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_gs_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_preprocessed_scc_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_scc_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_preprocessed_schur_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_schur_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_result.cpp -o vendor/cigraph/src/centrality/prpack/prpack_result.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_solver.cpp -o vendor/cigraph/src/centrality/prpack/prpack_solver.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_utils.cpp -o vendor/cigraph/src/centrality/prpack/prpack_utils.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/truss.cpp -o vendor/cigraph/src/centrality/truss.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliquer/cliquer.c -o vendor/cigraph/src/cliques/cliquer/cliquer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliquer/cliquer_graph.c -o vendor/cigraph/src/cliques/cliquer/cliquer_graph.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliquer/reorder.c -o vendor/cigraph/src/cliques/cliquer/reorder.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliquer_wrapper.c -o vendor/cigraph/src/cliques/cliquer_wrapper.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliques.c -o vendor/cigraph/src/cliques/cliques.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/glet.c -o vendor/cigraph/src/cliques/glet.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/maximal_cliques.c -o vendor/cigraph/src/cliques/maximal_cliques.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/community_misc.c -o vendor/cigraph/src/community/community_misc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/edge_betweenness.c -o vendor/cigraph/src/community/edge_betweenness.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/fast_modularity.c -o vendor/cigraph/src/community/fast_modularity.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/fluid.c -o vendor/cigraph/src/community/fluid.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/infomap/infomap.cc -o vendor/cigraph/src/community/infomap/infomap.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/infomap/infomap_FlowGraph.cc -o vendor/cigraph/src/community/infomap/infomap_FlowGraph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/infomap/infomap_Greedy.cc -o vendor/cigraph/src/community/infomap/infomap_Greedy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/label_propagation.c -o vendor/cigraph/src/community/label_propagation.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/leading_eigenvector.c -o vendor/cigraph/src/community/leading_eigenvector.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/leiden.c -o vendor/cigraph/src/community/leiden.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/louvain.c -o vendor/cigraph/src/community/louvain.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/modularity.c -o vendor/cigraph/src/community/modularity.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/optimal_modularity.c -o vendor/cigraph/src/community/optimal_modularity.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/spinglass/NetDataTypes.cpp -o vendor/cigraph/src/community/spinglass/NetDataTypes.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/spinglass/NetRoutines.cpp -o vendor/cigraph/src/community/spinglass/NetRoutines.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/spinglass/clustertool.cpp -o vendor/cigraph/src/community/spinglass/clustertool.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/spinglass/pottsmodel_2.cpp -o vendor/cigraph/src/community/spinglass/pottsmodel_2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/voronoi.c -o vendor/cigraph/src/community/voronoi.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/walktrap/walktrap.cpp -o vendor/cigraph/src/community/walktrap/walktrap.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/walktrap/walktrap_communities.cpp -o vendor/cigraph/src/community/walktrap/walktrap_communities.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/walktrap/walktrap_graph.cpp -o vendor/cigraph/src/community/walktrap/walktrap_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/walktrap/walktrap_heap.cpp -o vendor/cigraph/src/community/walktrap/walktrap_heap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/connectivity/cohesive_blocks.c -o vendor/cigraph/src/connectivity/cohesive_blocks.o vendor/cigraph/src/connectivity/cohesive_blocks.c:300:30: warning: variable 'kept' set but not used [-Wunused-but-set-variable] 300 | igraph_integer_t no, kept = 0; | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/connectivity/components.c -o vendor/cigraph/src/connectivity/components.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/connectivity/reachability.c -o vendor/cigraph/src/connectivity/reachability.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/connectivity/separators.c -o vendor/cigraph/src/connectivity/separators.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/adjacency.c -o vendor/cigraph/src/constructors/adjacency.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/atlas.c -o vendor/cigraph/src/constructors/atlas.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/basic_constructors.c -o vendor/cigraph/src/constructors/basic_constructors.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/circulant.c -o vendor/cigraph/src/constructors/circulant.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/de_bruijn.c -o vendor/cigraph/src/constructors/de_bruijn.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/famous.c -o vendor/cigraph/src/constructors/famous.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/full.c -o vendor/cigraph/src/constructors/full.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/generalized_petersen.c -o vendor/cigraph/src/constructors/generalized_petersen.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/kautz.c -o vendor/cigraph/src/constructors/kautz.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/lattices.c -o vendor/cigraph/src/constructors/lattices.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/lcf.c -o vendor/cigraph/src/constructors/lcf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/linegraph.c -o vendor/cigraph/src/constructors/linegraph.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/prufer.c -o vendor/cigraph/src/constructors/prufer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/regular.c -o vendor/cigraph/src/constructors/regular.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/trees.c -o vendor/cigraph/src/constructors/trees.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/array.c -o vendor/cigraph/src/core/array.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/bitset.c -o vendor/cigraph/src/core/bitset.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/bitset_list.c -o vendor/cigraph/src/core/bitset_list.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/buckets.c -o vendor/cigraph/src/core/buckets.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/cutheap.c -o vendor/cigraph/src/core/cutheap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/dqueue.c -o vendor/cigraph/src/core/dqueue.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/error.c -o vendor/cigraph/src/core/error.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/estack.c -o vendor/cigraph/src/core/estack.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/fixed_vectorlist.c -o vendor/cigraph/src/core/fixed_vectorlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/genheap.c -o vendor/cigraph/src/core/genheap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/grid.c -o vendor/cigraph/src/core/grid.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/heap.c -o vendor/cigraph/src/core/heap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/indheap.c -o vendor/cigraph/src/core/indheap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/interruption.c -o vendor/cigraph/src/core/interruption.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/marked_queue.c -o vendor/cigraph/src/core/marked_queue.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/matrix.c -o vendor/cigraph/src/core/matrix.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/matrix_list.c -o vendor/cigraph/src/core/matrix_list.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/memory.c -o vendor/cigraph/src/core/memory.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/printing.c -o vendor/cigraph/src/core/printing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/progress.c -o vendor/cigraph/src/core/progress.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/psumtree.c -o vendor/cigraph/src/core/psumtree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/set.c -o vendor/cigraph/src/core/set.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/sparsemat.c -o vendor/cigraph/src/core/sparsemat.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/stack.c -o vendor/cigraph/src/core/stack.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/statusbar.c -o vendor/cigraph/src/core/statusbar.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/strvector.c -o vendor/cigraph/src/core/strvector.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/trie.c -o vendor/cigraph/src/core/trie.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/vector.c -o vendor/cigraph/src/core/vector.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/vector_list.c -o vendor/cigraph/src/core/vector_list.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/vector_ptr.c -o vendor/cigraph/src/core/vector_ptr.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/flow/flow.c -o vendor/cigraph/src/flow/flow.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/flow/flow_conversion.c -o vendor/cigraph/src/flow/flow_conversion.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/flow/st-cuts.c -o vendor/cigraph/src/flow/st-cuts.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/barabasi.c -o vendor/cigraph/src/games/barabasi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/callaway_traits.c -o vendor/cigraph/src/games/callaway_traits.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/chung_lu.c -o vendor/cigraph/src/games/chung_lu.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/citations.c -o vendor/cigraph/src/games/citations.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/correlated.c -o vendor/cigraph/src/games/correlated.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/degree_sequence.c -o vendor/cigraph/src/games/degree_sequence.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_degree_sequence.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_degree_sequence.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp:271:19: warning: variable 'cost' set but not used [-Wunused-but-set-variable] 271 | unsigned long cost = 0; | ^ vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp:290:12: warning: variable 'avg_K' set but not used [-Wunused-but-set-variable] 290 | double avg_K = 0; | ^ vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp:291:12: warning: variable 'avg_T' set but not used [-Wunused-but-set-variable] 291 | double avg_T = 0; | ^ 3 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_optimized.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_optimized.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_mr-connected.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_mr-connected.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_random.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_random.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/dotproduct.c -o vendor/cigraph/src/games/dotproduct.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/erdos_renyi.c -o vendor/cigraph/src/games/erdos_renyi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/establishment.c -o vendor/cigraph/src/games/establishment.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/forestfire.c -o vendor/cigraph/src/games/forestfire.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/grg.c -o vendor/cigraph/src/games/grg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/growing_random.c -o vendor/cigraph/src/games/growing_random.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/islands.c -o vendor/cigraph/src/games/islands.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/k_regular.c -o vendor/cigraph/src/games/k_regular.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/preference.c -o vendor/cigraph/src/games/preference.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/recent_degree.c -o vendor/cigraph/src/games/recent_degree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/sbm.c -o vendor/cigraph/src/games/sbm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/static_fitness.c -o vendor/cigraph/src/games/static_fitness.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/tree.c -o vendor/cigraph/src/games/tree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/watts_strogatz.c -o vendor/cigraph/src/games/watts_strogatz.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/adjlist.c -o vendor/cigraph/src/graph/adjlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/attributes.c -o vendor/cigraph/src/graph/attributes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/basic_query.c -o vendor/cigraph/src/graph/basic_query.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/caching.c -o vendor/cigraph/src/graph/caching.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/cattributes.c -o vendor/cigraph/src/graph/cattributes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/graph_list.c -o vendor/cigraph/src/graph/graph_list.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/iterators.c -o vendor/cigraph/src/graph/iterators.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/type_common.c -o vendor/cigraph/src/graph/type_common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/type_indexededgelist.c -o vendor/cigraph/src/graph/type_indexededgelist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/visitors.c -o vendor/cigraph/src/graph/visitors.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/hrg/hrg.cc -o vendor/cigraph/src/hrg/hrg.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/hrg/hrg_types.cc -o vendor/cigraph/src/hrg/hrg_types.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/glpk_support.c -o vendor/cigraph/src/internal/glpk_support.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/hacks.c -o vendor/cigraph/src/internal/hacks.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/lsap.c -o vendor/cigraph/src/internal/lsap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/qsort.c -o vendor/cigraph/src/internal/qsort.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/qsort_r.c -o vendor/cigraph/src/internal/qsort_r.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/utils.c -o vendor/cigraph/src/internal/utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/zeroin.c -o vendor/cigraph/src/internal/zeroin.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/dimacs.c -o vendor/cigraph/src/io/dimacs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/dl.c -o vendor/cigraph/src/io/dl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/dot.c -o vendor/cigraph/src/io/dot.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/edgelist.c -o vendor/cigraph/src/io/edgelist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/gml-tree.c -o vendor/cigraph/src/io/gml-tree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/gml.c -o vendor/cigraph/src/io/gml.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/graphdb.c -o vendor/cigraph/src/io/graphdb.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/graphml.c -o vendor/cigraph/src/io/graphml.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/leda.c -o vendor/cigraph/src/io/leda.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/lgl.c -o vendor/cigraph/src/io/lgl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/ncol.c -o vendor/cigraph/src/io/ncol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/pajek.c -o vendor/cigraph/src/io/pajek.o vendor/cigraph/src/io/pajek.c:524:22: warning: variable 'notop' set but not used [-Wunused-but-set-variable] 524 | igraph_integer_t notop = 0, nobottom = 0; | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/parse_utils.c -o vendor/cigraph/src/io/parse_utils.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss.cc -o vendor/cigraph/src/isomorphism/bliss.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/defs.cc -o vendor/cigraph/src/isomorphism/bliss/defs.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/graph.cc -o vendor/cigraph/src/isomorphism/bliss/graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/heap.cc -o vendor/cigraph/src/isomorphism/bliss/heap.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/orbit.cc -o vendor/cigraph/src/isomorphism/bliss/orbit.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/partition.cc -o vendor/cigraph/src/isomorphism/bliss/partition.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/uintseqhash.cc -o vendor/cigraph/src/isomorphism/bliss/uintseqhash.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/utils.cc -o vendor/cigraph/src/isomorphism/bliss/utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/isoclasses.c -o vendor/cigraph/src/isomorphism/isoclasses.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/isomorphism_misc.c -o vendor/cigraph/src/isomorphism/isomorphism_misc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/lad.c -o vendor/cigraph/src/isomorphism/lad.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/queries.c -o vendor/cigraph/src/isomorphism/queries.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/vf2.c -o vendor/cigraph/src/isomorphism/vf2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/circular.c -o vendor/cigraph/src/layout/circular.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/davidson_harel.c -o vendor/cigraph/src/layout/davidson_harel.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/DensityGrid.cpp -o vendor/cigraph/src/layout/drl/DensityGrid.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/DensityGrid_3d.cpp -o vendor/cigraph/src/layout/drl/DensityGrid_3d.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/drl_graph.cpp -o vendor/cigraph/src/layout/drl/drl_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/drl_graph_3d.cpp -o vendor/cigraph/src/layout/drl/drl_graph_3d.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/drl_layout.cpp -o vendor/cigraph/src/layout/drl/drl_layout.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/drl_layout_3d.cpp -o vendor/cigraph/src/layout/drl/drl_layout_3d.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/drl_parse.cpp -o vendor/cigraph/src/layout/drl/drl_parse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/fruchterman_reingold.c -o vendor/cigraph/src/layout/fruchterman_reingold.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/gem.c -o vendor/cigraph/src/layout/gem.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/graphopt.c -o vendor/cigraph/src/layout/graphopt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/kamada_kawai.c -o vendor/cigraph/src/layout/kamada_kawai.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/large_graph.c -o vendor/cigraph/src/layout/large_graph.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/layout_bipartite.c -o vendor/cigraph/src/layout/layout_bipartite.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/layout_grid.c -o vendor/cigraph/src/layout/layout_grid.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/layout_random.c -o vendor/cigraph/src/layout/layout_random.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/mds.c -o vendor/cigraph/src/layout/mds.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/merge_dla.c -o vendor/cigraph/src/layout/merge_dla.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/merge_grid.c -o vendor/cigraph/src/layout/merge_grid.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/reingold_tilford.c -o vendor/cigraph/src/layout/reingold_tilford.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/sugiyama.c -o vendor/cigraph/src/layout/sugiyama.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/umap.c -o vendor/cigraph/src/layout/umap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/linalg/arpack.c -o vendor/cigraph/src/linalg/arpack.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/linalg/blas.c -o vendor/cigraph/src/linalg/blas.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/linalg/eigen.c -o vendor/cigraph/src/linalg/eigen.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/linalg/lapack.c -o vendor/cigraph/src/linalg/lapack.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/math/complex.c -o vendor/cigraph/src/math/complex.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/math/safe_intop.c -o vendor/cigraph/src/math/safe_intop.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/math/utils.c -o vendor/cigraph/src/math/utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/bipartite.c -o vendor/cigraph/src/misc/bipartite.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/chordality.c -o vendor/cigraph/src/misc/chordality.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/cocitation.c -o vendor/cigraph/src/misc/cocitation.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/coloring.c -o vendor/cigraph/src/misc/coloring.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/conversion.c -o vendor/cigraph/src/misc/conversion.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/cycle_bases.c -o vendor/cigraph/src/misc/cycle_bases.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/misc/degree_sequence.cpp -o vendor/cigraph/src/misc/degree_sequence.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/embedding.c -o vendor/cigraph/src/misc/embedding.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/feedback_arc_set.c -o vendor/cigraph/src/misc/feedback_arc_set.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/graphicality.c -o vendor/cigraph/src/misc/graphicality.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/matching.c -o vendor/cigraph/src/misc/matching.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/microscopic_update.c -o vendor/cigraph/src/misc/microscopic_update.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/mixing.c -o vendor/cigraph/src/misc/mixing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/motifs.c -o vendor/cigraph/src/misc/motifs.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/misc/order_cycle.cpp -o vendor/cigraph/src/misc/order_cycle.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/other.c -o vendor/cigraph/src/misc/other.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/power_law_fit.c -o vendor/cigraph/src/misc/power_law_fit.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/scan.c -o vendor/cigraph/src/misc/scan.o vendor/cigraph/src/misc/scan.c:76:23: warning: unused function 'igraph_i_trans4_il_simplify' [-Wunused-function] 76 | static igraph_error_t igraph_i_trans4_il_simplify(const igraph_t *graph, igraph_inclist_t *il, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/sir.c -o vendor/cigraph/src/misc/sir.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/spanning_trees.c -o vendor/cigraph/src/misc/spanning_trees.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/add_edge.c -o vendor/cigraph/src/operators/add_edge.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/complementer.c -o vendor/cigraph/src/operators/complementer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/compose.c -o vendor/cigraph/src/operators/compose.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/connect_neighborhood.c -o vendor/cigraph/src/operators/connect_neighborhood.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/contract.c -o vendor/cigraph/src/operators/contract.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/difference.c -o vendor/cigraph/src/operators/difference.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/disjoint_union.c -o vendor/cigraph/src/operators/disjoint_union.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/intersection.c -o vendor/cigraph/src/operators/intersection.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/join.c -o vendor/cigraph/src/operators/join.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/misc_internal.c -o vendor/cigraph/src/operators/misc_internal.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/permute.c -o vendor/cigraph/src/operators/permute.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/reverse.c -o vendor/cigraph/src/operators/reverse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/rewire.c -o vendor/cigraph/src/operators/rewire.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/rewire_edges.c -o vendor/cigraph/src/operators/rewire_edges.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/simplify.c -o vendor/cigraph/src/operators/simplify.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/subgraph.c -o vendor/cigraph/src/operators/subgraph.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/union.c -o vendor/cigraph/src/operators/union.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/all_shortest_paths.c -o vendor/cigraph/src/paths/all_shortest_paths.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/astar.c -o vendor/cigraph/src/paths/astar.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/bellman_ford.c -o vendor/cigraph/src/paths/bellman_ford.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/dijkstra.c -o vendor/cigraph/src/paths/dijkstra.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/distances.c -o vendor/cigraph/src/paths/distances.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/eulerian.c -o vendor/cigraph/src/paths/eulerian.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/floyd_warshall.c -o vendor/cigraph/src/paths/floyd_warshall.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/histogram.c -o vendor/cigraph/src/paths/histogram.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/johnson.c -o vendor/cigraph/src/paths/johnson.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/random_walk.c -o vendor/cigraph/src/paths/random_walk.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/shortest_paths.c -o vendor/cigraph/src/paths/shortest_paths.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/simple_paths.c -o vendor/cigraph/src/paths/simple_paths.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/sparsifier.c -o vendor/cigraph/src/paths/sparsifier.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/unweighted.c -o vendor/cigraph/src/paths/unweighted.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/voronoi.c -o vendor/cigraph/src/paths/voronoi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/widest_paths.c -o vendor/cigraph/src/paths/widest_paths.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/basic_properties.c -o vendor/cigraph/src/properties/basic_properties.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/complete.c -o vendor/cigraph/src/properties/complete.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/constraint.c -o vendor/cigraph/src/properties/constraint.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/convergence_degree.c -o vendor/cigraph/src/properties/convergence_degree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/dag.c -o vendor/cigraph/src/properties/dag.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/degrees.c -o vendor/cigraph/src/properties/degrees.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/ecc.c -o vendor/cigraph/src/properties/ecc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/girth.c -o vendor/cigraph/src/properties/girth.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/loops.c -o vendor/cigraph/src/properties/loops.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/multiplicity.c -o vendor/cigraph/src/properties/multiplicity.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/neighborhood.c -o vendor/cigraph/src/properties/neighborhood.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/perfect.c -o vendor/cigraph/src/properties/perfect.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/spectral.c -o vendor/cigraph/src/properties/spectral.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/trees.c -o vendor/cigraph/src/properties/trees.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/triangles.c -o vendor/cigraph/src/properties/triangles.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/random.c -o vendor/cigraph/src/random/random.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/rng_glibc2.c -o vendor/cigraph/src/random/rng_glibc2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/rng_mt19937.c -o vendor/cigraph/src/random/rng_mt19937.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/rng_pcg32.c -o vendor/cigraph/src/random/rng_pcg32.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/rng_pcg64.c -o vendor/cigraph/src/random/rng_pcg64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/version.c -o vendor/cigraph/src/version.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_add.c -o vendor/cigraph/vendor/cs/cs_add.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_amd.c -o vendor/cigraph/vendor/cs/cs_amd.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_chol.c -o vendor/cigraph/vendor/cs/cs_chol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_cholsol.c -o vendor/cigraph/vendor/cs/cs_cholsol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_compress.c -o vendor/cigraph/vendor/cs/cs_compress.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_counts.c -o vendor/cigraph/vendor/cs/cs_counts.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_cumsum.c -o vendor/cigraph/vendor/cs/cs_cumsum.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_dfs.c -o vendor/cigraph/vendor/cs/cs_dfs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_dmperm.c -o vendor/cigraph/vendor/cs/cs_dmperm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_droptol.c -o vendor/cigraph/vendor/cs/cs_droptol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_dropzeros.c -o vendor/cigraph/vendor/cs/cs_dropzeros.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_dupl.c -o vendor/cigraph/vendor/cs/cs_dupl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_entry.c -o vendor/cigraph/vendor/cs/cs_entry.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_ereach.c -o vendor/cigraph/vendor/cs/cs_ereach.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_etree.c -o vendor/cigraph/vendor/cs/cs_etree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_fkeep.c -o vendor/cigraph/vendor/cs/cs_fkeep.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_gaxpy.c -o vendor/cigraph/vendor/cs/cs_gaxpy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_happly.c -o vendor/cigraph/vendor/cs/cs_happly.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_house.c -o vendor/cigraph/vendor/cs/cs_house.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_ipvec.c -o vendor/cigraph/vendor/cs/cs_ipvec.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_leaf.c -o vendor/cigraph/vendor/cs/cs_leaf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_load.c -o vendor/cigraph/vendor/cs/cs_load.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_lsolve.c -o vendor/cigraph/vendor/cs/cs_lsolve.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_ltsolve.c -o vendor/cigraph/vendor/cs/cs_ltsolve.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_lu.c -o vendor/cigraph/vendor/cs/cs_lu.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_lusol.c -o vendor/cigraph/vendor/cs/cs_lusol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_malloc.c -o vendor/cigraph/vendor/cs/cs_malloc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_maxtrans.c -o vendor/cigraph/vendor/cs/cs_maxtrans.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_multiply.c -o vendor/cigraph/vendor/cs/cs_multiply.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_norm.c -o vendor/cigraph/vendor/cs/cs_norm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_permute.c -o vendor/cigraph/vendor/cs/cs_permute.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_pinv.c -o vendor/cigraph/vendor/cs/cs_pinv.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_post.c -o vendor/cigraph/vendor/cs/cs_post.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_print.c -o vendor/cigraph/vendor/cs/cs_print.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_pvec.c -o vendor/cigraph/vendor/cs/cs_pvec.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_qr.c -o vendor/cigraph/vendor/cs/cs_qr.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_qrsol.c -o vendor/cigraph/vendor/cs/cs_qrsol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_randperm.c -o vendor/cigraph/vendor/cs/cs_randperm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_reach.c -o vendor/cigraph/vendor/cs/cs_reach.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_scatter.c -o vendor/cigraph/vendor/cs/cs_scatter.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_scc.c -o vendor/cigraph/vendor/cs/cs_scc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_schol.c -o vendor/cigraph/vendor/cs/cs_schol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_spsolve.c -o vendor/cigraph/vendor/cs/cs_spsolve.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_sqr.c -o vendor/cigraph/vendor/cs/cs_sqr.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_symperm.c -o vendor/cigraph/vendor/cs/cs_symperm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_tdfs.c -o vendor/cigraph/vendor/cs/cs_tdfs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_transpose.c -o vendor/cigraph/vendor/cs/cs_transpose.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_updown.c -o vendor/cigraph/vendor/cs/cs_updown.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_usolve.c -o vendor/cigraph/vendor/cs/cs_usolve.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_util.c -o vendor/cigraph/vendor/cs/cs_util.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_utsolve.c -o vendor/cigraph/vendor/cs/cs_utsolve.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-advance-128.c -o vendor/cigraph/vendor/pcg/pcg-advance-128.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-advance-64.c -o vendor/cigraph/vendor/pcg/pcg-advance-64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-output-128.c -o vendor/cigraph/vendor/pcg/pcg-output-128.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-output-32.c -o vendor/cigraph/vendor/pcg/pcg-output-32.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-output-64.c -o vendor/cigraph/vendor/pcg/pcg-output-64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-rngs-128.c -o vendor/cigraph/vendor/pcg/pcg-rngs-128.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-rngs-64.c -o vendor/cigraph/vendor/pcg/pcg-rngs-64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/gss.c -o vendor/cigraph/vendor/plfit/gss.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/hzeta.c -o vendor/cigraph/vendor/plfit/hzeta.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/kolmogorov.c -o vendor/cigraph/vendor/plfit/kolmogorov.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/lbfgs.c -o vendor/cigraph/vendor/plfit/lbfgs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/mt.c -o vendor/cigraph/vendor/plfit/mt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/options.c -o vendor/cigraph/vendor/plfit/options.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/platform.c -o vendor/cigraph/vendor/plfit/platform.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/plfit.c -o vendor/cigraph/vendor/plfit/plfit.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/plfit_error.c -o vendor/cigraph/vendor/plfit/plfit_error.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/rbinom.c -o vendor/cigraph/vendor/plfit/rbinom.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/sampling.c -o vendor/cigraph/vendor/plfit/sampling.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/dl-lexer.c -o vendor/io/dl-lexer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/dl-parser.c -o vendor/io/dl-parser.o src/vendor/io/dl-parser.c:1376:9: warning: variable 'igraph_dl_yynerrs' set but not used [-Wunused-but-set-variable] 1376 | int yynerrs = 0; | ^ vendor/io/dl-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_dl_yynerrs | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/gml-lexer.c -o vendor/io/gml-lexer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/gml-parser.c -o vendor/io/gml-parser.o src/vendor/io/gml-parser.c:1294:9: warning: variable 'igraph_gml_yynerrs' set but not used [-Wunused-but-set-variable] 1294 | int yynerrs = 0; | ^ vendor/io/gml-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_gml_yynerrs | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/lgl-lexer.c -o vendor/io/lgl-lexer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/lgl-parser.c -o vendor/io/lgl-parser.o src/vendor/io/lgl-parser.c:1246:9: warning: variable 'igraph_lgl_yynerrs' set but not used [-Wunused-but-set-variable] 1246 | int yynerrs = 0; | ^ vendor/io/lgl-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_lgl_yynerrs | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/ncol-lexer.c -o vendor/io/ncol-lexer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/ncol-parser.c -o vendor/io/ncol-parser.o src/vendor/io/ncol-parser.c:1239:9: warning: variable 'igraph_ncol_yynerrs' set but not used [-Wunused-but-set-variable] 1239 | int yynerrs = 0; | ^ vendor/io/ncol-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_ncol_yynerrs | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/pajek-lexer.c -o vendor/io/pajek-lexer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/pajek-parser.c -o vendor/io/pajek-parser.o src/vendor/io/pajek-parser.c:1531:9: warning: variable 'igraph_pajek_yynerrs' set but not used [-Wunused-but-set-variable] 1531 | int yynerrs = 0; | ^ vendor/io/pajek-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_pajek_yynerrs | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Color.cpp -o vendor/simpleraytracer/Color.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Light.cpp -o vendor/simpleraytracer/Light.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Point.cpp -o vendor/simpleraytracer/Point.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Ray.cpp -o vendor/simpleraytracer/Ray.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/RayTracer.cpp -o vendor/simpleraytracer/RayTracer.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/RayVector.cpp -o vendor/simpleraytracer/RayVector.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Shape.cpp -o vendor/simpleraytracer/Shape.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Sphere.cpp -o vendor/simpleraytracer/Sphere.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Triangle.cpp -o vendor/simpleraytracer/Triangle.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/unit_limiter.cpp -o vendor/simpleraytracer/unit_limiter.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/R.c -o vendor/uuid/R.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/clear.c -o vendor/uuid/clear.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/compare.c -o vendor/uuid/compare.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/copy.c -o vendor/uuid/copy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/gen_uuid.c -o vendor/uuid/gen_uuid.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/isnull.c -o vendor/uuid/isnull.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/pack.c -o vendor/uuid/pack.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/parse.c -o vendor/uuid/parse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/unpack.c -o vendor/uuid/unpack.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/unparse.c -o vendor/uuid/unparse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/mini-gmp/mini-gmp.c -o vendor/cigraph/vendor/mini-gmp/mini-gmp.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o igraph.so cpp11.o cpprinterface.o init.o rinterface.o rinterface_extra.o rrandom.o simpleraytracer.o vendor/arpack/dgetv0.o vendor/arpack/dlaqrb.o vendor/arpack/dmout.o vendor/arpack/dnaitr.o vendor/arpack/dnapps.o vendor/arpack/dnaup2.o vendor/arpack/dnaupd.o vendor/arpack/dnconv.o vendor/arpack/dneigh.o vendor/arpack/dneupd.o vendor/arpack/dngets.o vendor/arpack/dsaitr.o vendor/arpack/dsapps.o vendor/arpack/dsaup2.o vendor/arpack/dsaupd.o vendor/arpack/dsconv.o vendor/arpack/dseigt.o vendor/arpack/dsesrt.o vendor/arpack/dseupd.o vendor/arpack/dsgets.o vendor/arpack/dsortc.o vendor/arpack/dsortr.o vendor/arpack/dstatn.o vendor/arpack/dstats.o vendor/arpack/dstqrb.o vendor/arpack/dvout.o vendor/arpack/ivout.o vendor/arpack/second.o vendor/arpack/wrap.o vendor/cigraph/src/centrality/betweenness.o vendor/cigraph/src/centrality/centrality_other.o vendor/cigraph/src/centrality/centralization.o vendor/cigraph/src/centrality/closeness.o vendor/cigraph/src/centrality/coreness.o vendor/cigraph/src/centrality/eigenvector.o vendor/cigraph/src/centrality/hub_authority.o vendor/cigraph/src/centrality/pagerank.o vendor/cigraph/src/centrality/prpack.o vendor/cigraph/src/centrality/prpack/prpack_base_graph.o vendor/cigraph/src/centrality/prpack/prpack_igraph_graph.o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_ge_graph.o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_gs_graph.o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_scc_graph.o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_schur_graph.o vendor/cigraph/src/centrality/prpack/prpack_result.o vendor/cigraph/src/centrality/prpack/prpack_solver.o vendor/cigraph/src/centrality/prpack/prpack_utils.o vendor/cigraph/src/centrality/truss.o vendor/cigraph/src/cliques/cliquer/cliquer.o vendor/cigraph/src/cliques/cliquer/cliquer_graph.o vendor/cigraph/src/cliques/cliquer/reorder.o vendor/cigraph/src/cliques/cliquer_wrapper.o vendor/cigraph/src/cliques/cliques.o vendor/cigraph/src/cliques/glet.o vendor/cigraph/src/cliques/maximal_cliques.o vendor/cigraph/src/community/community_misc.o vendor/cigraph/src/community/edge_betweenness.o vendor/cigraph/src/community/fast_modularity.o vendor/cigraph/src/community/fluid.o vendor/cigraph/src/community/infomap/infomap.o vendor/cigraph/src/community/infomap/infomap_FlowGraph.o vendor/cigraph/src/community/infomap/infomap_Greedy.o vendor/cigraph/src/community/label_propagation.o vendor/cigraph/src/community/leading_eigenvector.o vendor/cigraph/src/community/leiden.o vendor/cigraph/src/community/louvain.o vendor/cigraph/src/community/modularity.o vendor/cigraph/src/community/optimal_modularity.o vendor/cigraph/src/community/spinglass/NetDataTypes.o vendor/cigraph/src/community/spinglass/NetRoutines.o vendor/cigraph/src/community/spinglass/clustertool.o vendor/cigraph/src/community/spinglass/pottsmodel_2.o vendor/cigraph/src/community/voronoi.o vendor/cigraph/src/community/walktrap/walktrap.o vendor/cigraph/src/community/walktrap/walktrap_communities.o vendor/cigraph/src/community/walktrap/walktrap_graph.o vendor/cigraph/src/community/walktrap/walktrap_heap.o vendor/cigraph/src/connectivity/cohesive_blocks.o vendor/cigraph/src/connectivity/components.o vendor/cigraph/src/connectivity/reachability.o vendor/cigraph/src/connectivity/separators.o vendor/cigraph/src/constructors/adjacency.o vendor/cigraph/src/constructors/atlas.o vendor/cigraph/src/constructors/basic_constructors.o vendor/cigraph/src/constructors/circulant.o vendor/cigraph/src/constructors/de_bruijn.o vendor/cigraph/src/constructors/famous.o vendor/cigraph/src/constructors/full.o vendor/cigraph/src/constructors/generalized_petersen.o vendor/cigraph/src/constructors/kautz.o vendor/cigraph/src/constructors/lattices.o vendor/cigraph/src/constructors/lcf.o vendor/cigraph/src/constructors/linegraph.o vendor/cigraph/src/constructors/prufer.o vendor/cigraph/src/constructors/regular.o vendor/cigraph/src/constructors/trees.o vendor/cigraph/src/core/array.o vendor/cigraph/src/core/bitset.o vendor/cigraph/src/core/bitset_list.o vendor/cigraph/src/core/buckets.o vendor/cigraph/src/core/cutheap.o vendor/cigraph/src/core/dqueue.o vendor/cigraph/src/core/error.o vendor/cigraph/src/core/estack.o vendor/cigraph/src/core/fixed_vectorlist.o vendor/cigraph/src/core/genheap.o vendor/cigraph/src/core/grid.o vendor/cigraph/src/core/heap.o vendor/cigraph/src/core/indheap.o vendor/cigraph/src/core/interruption.o vendor/cigraph/src/core/marked_queue.o vendor/cigraph/src/core/matrix.o vendor/cigraph/src/core/matrix_list.o vendor/cigraph/src/core/memory.o vendor/cigraph/src/core/printing.o vendor/cigraph/src/core/progress.o vendor/cigraph/src/core/psumtree.o vendor/cigraph/src/core/set.o vendor/cigraph/src/core/sparsemat.o vendor/cigraph/src/core/stack.o vendor/cigraph/src/core/statusbar.o vendor/cigraph/src/core/strvector.o vendor/cigraph/src/core/trie.o vendor/cigraph/src/core/vector.o vendor/cigraph/src/core/vector_list.o vendor/cigraph/src/core/vector_ptr.o vendor/cigraph/src/flow/flow.o vendor/cigraph/src/flow/flow_conversion.o vendor/cigraph/src/flow/st-cuts.o vendor/cigraph/src/games/barabasi.o vendor/cigraph/src/games/callaway_traits.o vendor/cigraph/src/games/chung_lu.o vendor/cigraph/src/games/citations.o vendor/cigraph/src/games/correlated.o vendor/cigraph/src/games/degree_sequence.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_degree_sequence.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_optimized.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_mr-connected.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_random.o vendor/cigraph/src/games/dotproduct.o vendor/cigraph/src/games/erdos_renyi.o vendor/cigraph/src/games/establishment.o vendor/cigraph/src/games/forestfire.o vendor/cigraph/src/games/grg.o vendor/cigraph/src/games/growing_random.o vendor/cigraph/src/games/islands.o vendor/cigraph/src/games/k_regular.o vendor/cigraph/src/games/preference.o vendor/cigraph/src/games/recent_degree.o vendor/cigraph/src/games/sbm.o vendor/cigraph/src/games/static_fitness.o vendor/cigraph/src/games/tree.o vendor/cigraph/src/games/watts_strogatz.o vendor/cigraph/src/graph/adjlist.o vendor/cigraph/src/graph/attributes.o vendor/cigraph/src/graph/basic_query.o vendor/cigraph/src/graph/caching.o vendor/cigraph/src/graph/cattributes.o vendor/cigraph/src/graph/graph_list.o vendor/cigraph/src/graph/iterators.o vendor/cigraph/src/graph/type_common.o vendor/cigraph/src/graph/type_indexededgelist.o vendor/cigraph/src/graph/visitors.o vendor/cigraph/src/hrg/hrg.o vendor/cigraph/src/hrg/hrg_types.o vendor/cigraph/src/internal/glpk_support.o vendor/cigraph/src/internal/hacks.o vendor/cigraph/src/internal/lsap.o vendor/cigraph/src/internal/qsort.o vendor/cigraph/src/internal/qsort_r.o vendor/cigraph/src/internal/utils.o vendor/cigraph/src/internal/zeroin.o vendor/cigraph/src/io/dimacs.o vendor/cigraph/src/io/dl.o vendor/cigraph/src/io/dot.o vendor/cigraph/src/io/edgelist.o vendor/cigraph/src/io/gml-tree.o vendor/cigraph/src/io/gml.o vendor/cigraph/src/io/graphdb.o vendor/cigraph/src/io/graphml.o vendor/cigraph/src/io/leda.o vendor/cigraph/src/io/lgl.o vendor/cigraph/src/io/ncol.o vendor/cigraph/src/io/pajek.o vendor/cigraph/src/io/parse_utils.o vendor/cigraph/src/isomorphism/bliss.o vendor/cigraph/src/isomorphism/bliss/defs.o vendor/cigraph/src/isomorphism/bliss/graph.o vendor/cigraph/src/isomorphism/bliss/heap.o vendor/cigraph/src/isomorphism/bliss/orbit.o vendor/cigraph/src/isomorphism/bliss/partition.o vendor/cigraph/src/isomorphism/bliss/uintseqhash.o vendor/cigraph/src/isomorphism/bliss/utils.o vendor/cigraph/src/isomorphism/isoclasses.o vendor/cigraph/src/isomorphism/isomorphism_misc.o vendor/cigraph/src/isomorphism/lad.o vendor/cigraph/src/isomorphism/queries.o vendor/cigraph/src/isomorphism/vf2.o vendor/cigraph/src/layout/circular.o vendor/cigraph/src/layout/davidson_harel.o vendor/cigraph/src/layout/drl/DensityGrid.o vendor/cigraph/src/layout/drl/DensityGrid_3d.o vendor/cigraph/src/layout/drl/drl_graph.o vendor/cigraph/src/layout/drl/drl_graph_3d.o vendor/cigraph/src/layout/drl/drl_layout.o vendor/cigraph/src/layout/drl/drl_layout_3d.o vendor/cigraph/src/layout/drl/drl_parse.o vendor/cigraph/src/layout/fruchterman_reingold.o vendor/cigraph/src/layout/gem.o vendor/cigraph/src/layout/graphopt.o vendor/cigraph/src/layout/kamada_kawai.o vendor/cigraph/src/layout/large_graph.o vendor/cigraph/src/layout/layout_bipartite.o vendor/cigraph/src/layout/layout_grid.o vendor/cigraph/src/layout/layout_random.o vendor/cigraph/src/layout/mds.o vendor/cigraph/src/layout/merge_dla.o vendor/cigraph/src/layout/merge_grid.o vendor/cigraph/src/layout/reingold_tilford.o vendor/cigraph/src/layout/sugiyama.o vendor/cigraph/src/layout/umap.o vendor/cigraph/src/linalg/arpack.o vendor/cigraph/src/linalg/blas.o vendor/cigraph/src/linalg/eigen.o vendor/cigraph/src/linalg/lapack.o vendor/cigraph/src/math/complex.o vendor/cigraph/src/math/safe_intop.o vendor/cigraph/src/math/utils.o vendor/cigraph/src/misc/bipartite.o vendor/cigraph/src/misc/chordality.o vendor/cigraph/src/misc/cocitation.o vendor/cigraph/src/misc/coloring.o vendor/cigraph/src/misc/conversion.o vendor/cigraph/src/misc/cycle_bases.o vendor/cigraph/src/misc/degree_sequence.o vendor/cigraph/src/misc/embedding.o vendor/cigraph/src/misc/feedback_arc_set.o vendor/cigraph/src/misc/graphicality.o vendor/cigraph/src/misc/matching.o vendor/cigraph/src/misc/microscopic_update.o vendor/cigraph/src/misc/mixing.o vendor/cigraph/src/misc/motifs.o vendor/cigraph/src/misc/order_cycle.o vendor/cigraph/src/misc/other.o vendor/cigraph/src/misc/power_law_fit.o vendor/cigraph/src/misc/scan.o vendor/cigraph/src/misc/sir.o vendor/cigraph/src/misc/spanning_trees.o vendor/cigraph/src/operators/add_edge.o 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vendor/cigraph/vendor/cs/cs_util.o vendor/cigraph/vendor/cs/cs_utsolve.o vendor/cigraph/vendor/pcg/pcg-advance-128.o vendor/cigraph/vendor/pcg/pcg-advance-64.o vendor/cigraph/vendor/pcg/pcg-output-128.o vendor/cigraph/vendor/pcg/pcg-output-32.o vendor/cigraph/vendor/pcg/pcg-output-64.o vendor/cigraph/vendor/pcg/pcg-rngs-128.o vendor/cigraph/vendor/pcg/pcg-rngs-64.o vendor/cigraph/vendor/plfit/gss.o vendor/cigraph/vendor/plfit/hzeta.o vendor/cigraph/vendor/plfit/kolmogorov.o vendor/cigraph/vendor/plfit/lbfgs.o vendor/cigraph/vendor/plfit/mt.o vendor/cigraph/vendor/plfit/options.o vendor/cigraph/vendor/plfit/platform.o vendor/cigraph/vendor/plfit/plfit.o vendor/cigraph/vendor/plfit/plfit_error.o vendor/cigraph/vendor/plfit/rbinom.o vendor/cigraph/vendor/plfit/sampling.o vendor/io/dl-lexer.o vendor/io/dl-parser.o vendor/io/gml-lexer.o vendor/io/gml-parser.o vendor/io/lgl-lexer.o vendor/io/lgl-parser.o vendor/io/ncol-lexer.o vendor/io/ncol-parser.o vendor/io/pajek-lexer.o vendor/io/pajek-parser.o vendor/simpleraytracer/Color.o vendor/simpleraytracer/Light.o vendor/simpleraytracer/Point.o vendor/simpleraytracer/Ray.o vendor/simpleraytracer/RayTracer.o vendor/simpleraytracer/RayVector.o vendor/simpleraytracer/Shape.o vendor/simpleraytracer/Sphere.o vendor/simpleraytracer/Triangle.o vendor/simpleraytracer/unit_limiter.o vendor/uuid/R.o vendor/uuid/clear.o vendor/uuid/compare.o vendor/uuid/copy.o vendor/uuid/gen_uuid.o vendor/uuid/isnull.o vendor/uuid/pack.o vendor/uuid/parse.o vendor/uuid/unpack.o vendor/uuid/unparse.o vendor/cigraph/vendor/mini-gmp/mini-gmp.o -lxml2 -lglpk -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdHcVfu/R.INSTALL3c0ec571979d75/igraph/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-igraph/00new/igraph/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (igraph) * installing *source* package ‘DelayedArray’ ... ** this is package ‘DelayedArray’ version ‘0.32.0’ ** package ‘DelayedArray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBlxtdT/R.INSTALL3c37aa12a152da/DelayedArray/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_DelayedArray.c -o R_init_DelayedArray.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c compress_atomic_vector.c -o compress_atomic_vector.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o compress_atomic_vector.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBlxtdT/R.INSTALL3c37aa12a152da/DelayedArray/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-DelayedArray/00new/DelayedArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘apply’ in package ‘DelayedArray’ Creating a new generic function for ‘sweep’ in package ‘DelayedArray’ Creating a new generic function for ‘scale’ in package ‘DelayedArray’ Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DelayedArray) begin installing package ‘SummarizedExperiment’ * installing *source* package ‘SummarizedExperiment’ ... ** this is package ‘SummarizedExperiment’ version ‘1.36.0’ ** package ‘SummarizedExperiment’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SummarizedExperiment) begin installing package ‘MultiAssayExperiment’ begin installing package ‘MsFeatures’ * installing *source* package ‘MsFeatures’ ... ** this is package ‘MsFeatures’ version ‘1.14.0’ ** package ‘MsFeatures’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MsFeatures) * installing *source* package ‘MultiAssayExperiment’ ... ** this is package ‘MultiAssayExperiment’ version ‘1.32.0’ ** package ‘MultiAssayExperiment’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiAssayExperiment) begin installing package ‘QFeatures’ * installing *source* package ‘QFeatures’ ... ** this is package ‘QFeatures’ version ‘1.16.0’ ** package ‘QFeatures’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘sweep’ in package ‘QFeatures’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (QFeatures) begin installing package ‘MsExperiment’ begin installing package ‘PSMatch’ * installing *source* package ‘PSMatch’ ... ** this is package ‘PSMatch’ version ‘1.10.0’ ** package ‘PSMatch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PSMatch) * installing *source* package ‘MsExperiment’ ... ** this is package ‘MsExperiment’ version ‘1.8.0’ ** package ‘MsExperiment’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MsExperiment) * installing *source* package ‘mzR’ ... ** this is package ‘mzR’ version ‘2.40.0’ ** package ‘mzR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgI9pQU/R.INSTALL3c34d43f6cfed3/mzR/src' rm -f RcppPwiz.o RcppPwizModule.o RcppIdent.o RcppIdentModule.o ./boost/libs/system/src/error_code.o ./boost/libs/regex/src/posix_api.o ./boost/libs/regex/src/regex_debug.o ./boost/libs/regex/src/regex.o ./boost/libs/regex/src/wide_posix_api.o ./boost/libs/regex/src/static_mutex.o ./boost/libs/iostreams/src/zlib.o ./boost/libs/iostreams/src/file_descriptor.o ./boost/libs/filesystem/src/operations.o ./boost/libs/filesystem/src/directory.o ./boost/libs/filesystem/src/exception.o ./boost/libs/filesystem/src/path.o ./boost/libs/filesystem/src/unique_path.o ./boost/libs/filesystem/src/utf8_codecvt_facet.o ./boost/libs/chrono/src/chrono.o ./boost/libs/chrono/src/process_cpu_clocks.o ./boost/libs/chrono/src/thread_clock.o ./pwiz/data/msdata/Version.o ./pwiz/data/identdata/Version.o ./pwiz/data/common/MemoryIndex.o ./pwiz/data/common/CVTranslator.o ./pwiz/data/common/cv.o ./pwiz/data/common/ParamTypes.o ./pwiz/data/common/BinaryIndexStream.o ./pwiz/data/common/diff_std.o ./pwiz/data/common/Unimod.o ./pwiz/data/msdata/mz5/Configuration_mz5.o ./pwiz/data/msdata/mz5/Connection_mz5.o ./pwiz/data/msdata/mz5/Datastructures_mz5.o ./pwiz/data/msdata/mz5/ReferenceRead_mz5.o ./pwiz/data/msdata/mz5/ReferenceWrite_mz5.o ./pwiz/data/msdata/mz5/Translator_mz5.o ./pwiz/data/msdata/DefaultReaderList.o ./pwiz/data/msdata/ChromatogramList_mzML.o ./pwiz/data/msdata/ChromatogramList_mz5.o ./pwiz/data/msdata/examples.o ./pwiz/data/msdata/Serializer_mzML.o ./pwiz/data/msdata/Serializer_MSn.o ./pwiz/data/msdata/Reader.o ./pwiz/data/msdata/Serializer_mz5.o ./pwiz/data/msdata/Serializer_MGF.o ./pwiz/data/msdata/Serializer_mzXML.o ./pwiz/data/msdata/SpectrumListBase.o ./pwiz/data/msdata/SpectrumList_MGF.o ./pwiz/data/msdata/SpectrumList_mzML.o ./pwiz/data/msdata/SpectrumList_MSn.o ./pwiz/data/msdata/SpectrumList_mz5.o ./pwiz/data/msdata/BinaryDataEncoder.o ./pwiz/data/msdata/Diff.o ./pwiz/data/msdata/MSData.o ./pwiz/data/msdata/References.o ./pwiz/data/msdata/SpectrumList_mzXML.o ./pwiz/data/msdata/IO.o ./pwiz/data/msdata/SpectrumList_BTDX.o ./pwiz/data/msdata/SpectrumInfo.o ./pwiz/data/msdata/LegacyAdapter.o ./pwiz/data/msdata/SpectrumIterator.o ./pwiz/data/msdata/MSDataFile.o ./pwiz/data/msdata/MSNumpress.o ./pwiz/data/msdata/SpectrumListCache.o ./pwiz/data/msdata/Index_mzML.o ./pwiz/data/msdata/SpectrumWorkerThreads.o ./pwiz/data/identdata/IdentDataFile.o ./pwiz/data/identdata/IdentData.o ./pwiz/data/identdata/DefaultReaderList.o ./pwiz/data/identdata/Reader.o ./pwiz/data/identdata/Serializer_protXML.o ./pwiz/data/identdata/Serializer_pepXML.o ./pwiz/data/identdata/Serializer_mzid.o ./pwiz/data/identdata/IO.o ./pwiz/data/identdata/References.o ./pwiz/data/identdata/MascotReader.o ./pwiz/data/proteome/Modification.o ./pwiz/data/proteome/Digestion.o ./pwiz/data/proteome/Peptide.o ./pwiz/data/proteome/AminoAcid.o ./pwiz/utility/minimxml/XMLWriter.o ./pwiz/utility/minimxml/SAXParser.o ./pwiz/utility/chemistry/Chemistry.o ./pwiz/utility/chemistry/ChemistryData.o ./pwiz/utility/chemistry/MZTolerance.o ./pwiz/utility/misc/IntegerSet.o ./pwiz/utility/misc/Base64.o ./pwiz/utility/misc/BinaryData.o ./pwiz/utility/misc/IterationListener.o ./pwiz/utility/misc/MSIHandler.o ./pwiz/utility/misc/Filesystem.o ./pwiz/utility/misc/TabReader.o ./pwiz/utility/misc/random_access_compressed_ifstream.o ./pwiz/utility/misc/SHA1.o ./pwiz/utility/misc/SHA1Calculator.o ./pwiz/utility/misc/sha1calc.o ./pwiz/utility/misc/String.o ./RcppExports.o ./boost/libs/thread/src/pthread/once.o ./boost/libs/thread/src/pthread/thread.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppPwiz.cpp -o RcppPwiz.o In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:12: In file included from ./pwiz/data/msdata/MSDataFile.hpp:30: In file included from ./pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:12: In file included from ./pwiz/data/msdata/MSDataFile.hpp:30: In file included from ./pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:12: In file included from ./pwiz/data/msdata/MSDataFile.hpp:30: In file included from ./pwiz/data/msdata/Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ RcppPwiz.cpp:408:57: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 408 | Rprintf("Index whichScan out of bounds [1 ... %d].\n", n_scans); | ~~ ^~~~~~~ | %zu RcppPwiz.cpp:778:10: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] 778 | if ( (precursorScanNum[i] > 0) | (precursorMZ[i] > 0) ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | || RcppPwiz.cpp:778:10: note: cast one or both operands to int to silence this warning RcppPwiz.cpp:854:63: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 854 | Rprintf("Index whichChrom out of bounds [0 ... %d].\n", (clp->size())-1); | ~~ ^~~~~~~~~~~~~~~ | %zu In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppPwizModule.cpp -o RcppPwizModule.o In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:12: In file included from ./pwiz/data/msdata/MSDataFile.hpp:30: In file included from ./pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:12: In file included from ./pwiz/data/msdata/MSDataFile.hpp:30: In file included from ./pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:12: In file included from ./pwiz/data/msdata/MSDataFile.hpp:30: In file included from ./pwiz/data/msdata/Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppIdent.cpp -o RcppIdent.o In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:11: In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29: In file included from ./pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppIdentModule.cpp -o RcppIdentModule.o In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:11: In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29: In file included from ./pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/system/src/error_code.cpp -o boost/libs/system/src/error_code.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/regex/src/posix_api.cpp -o boost/libs/regex/src/posix_api.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/regex/src/regex_debug.cpp -o boost/libs/regex/src/regex_debug.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/regex/src/regex.cpp -o boost/libs/regex/src/regex.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/regex/src/wide_posix_api.cpp -o boost/libs/regex/src/wide_posix_api.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/regex/src/static_mutex.cpp -o boost/libs/regex/src/static_mutex.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/iostreams/src/zlib.cpp -o boost/libs/iostreams/src/zlib.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/iostreams/src/file_descriptor.cpp -o boost/libs/iostreams/src/file_descriptor.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/filesystem/src/operations.cpp -o boost/libs/filesystem/src/operations.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/filesystem/src/directory.cpp -o boost/libs/filesystem/src/directory.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/filesystem/src/exception.cpp -o boost/libs/filesystem/src/exception.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/filesystem/src/path.cpp -o boost/libs/filesystem/src/path.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/filesystem/src/unique_path.cpp -o boost/libs/filesystem/src/unique_path.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/filesystem/src/utf8_codecvt_facet.cpp -o boost/libs/filesystem/src/utf8_codecvt_facet.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/chrono/src/chrono.cpp -o boost/libs/chrono/src/chrono.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/chrono/src/process_cpu_clocks.cpp -o boost/libs/chrono/src/process_cpu_clocks.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/chrono/src/thread_clock.cpp -o boost/libs/chrono/src/thread_clock.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Version.cpp -o pwiz/data/msdata/Version.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/Version.cpp -o pwiz/data/identdata/Version.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/MemoryIndex.cpp -o pwiz/data/common/MemoryIndex.o In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:25: In file included from pwiz/data/common/MemoryIndex.hpp:26: In file included from pwiz/data/common/Index.hpp:30: In file included from ./boost/shared_ptr.hpp:17: In file included from ./boost/smart_ptr/shared_ptr.hpp:17: In file included from ./boost/smart_ptr/detail/shared_count.hpp:27: In file included from ./boost/smart_ptr/detail/sp_counted_impl.hpp:27: In file included from ./boost/checked_delete.hpp:15: ./boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'pwiz::data::MemoryIndex::Impl' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 36 | delete x; | ^ ./boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete' requested here 154 | boost::checked_delete( p ); | ^ ./boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count' requested here 279 | boost::detail::shared_count( p ).swap( pn ); | ^ ./boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct' requested here 373 | boost::detail::sp_pointer_construct( this, p, pn ); | ^ pwiz/data/common/MemoryIndex.cpp:73:44: note: in instantiation of function template specialization 'boost::shared_ptr::shared_ptr' requested here 73 | PWIZ_API_DECL MemoryIndex::MemoryIndex() : impl_(new Impl) {} | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/CVTranslator.cpp -o pwiz/data/common/CVTranslator.o In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/common/CVTranslator.cpp:145:53: warning: '&&' within '||' [-Wlogical-op-parentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ~~ pwiz/data/common/CVTranslator.cpp:145:53: note: place parentheses around the '&&' expression to silence this warning 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ^ | ( ) pwiz/data/common/CVTranslator.cpp:146:40: warning: '&&' within '||' [-Wlogical-op-parentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~ 146 | key=="pi_" && value==MS_PI && cvid==UO_pi || // MS_PI==photoionization, UO_pi==3.14 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ pwiz/data/common/CVTranslator.cpp:146:40: note: place parentheses around the '&&' expression to silence this warning 146 | key=="pi_" && value==MS_PI && cvid==UO_pi || // MS_PI==photoionization, UO_pi==3.14 | ^ | ( ) pwiz/data/common/CVTranslator.cpp:147:40: warning: '&&' within '||' [-Wlogical-op-parentheses] 146 | key=="pi_" && value==MS_PI && cvid==UO_pi || // MS_PI==photoionization, UO_pi==3.14 | ~~ 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ pwiz/data/common/CVTranslator.cpp:147:40: note: place parentheses around the '&&' expression to silence this warning 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ^ | ( ) pwiz/data/common/CVTranslator.cpp:148:40: warning: '&&' within '||' [-Wlogical-op-parentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~ 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ pwiz/data/common/CVTranslator.cpp:148:40: note: place parentheses around the '&&' expression to silence this warning 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ^ | ( ) In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/cv.cpp -o pwiz/data/common/cv.o In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/common/cv.cpp:35: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/ParamTypes.cpp -o pwiz/data/common/ParamTypes.o In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/common/ParamTypes.cpp:212:37: warning: unused variable 'it' [-Wunused-variable] 212 | vector::const_iterator it; | ^~ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/BinaryIndexStream.cpp -o pwiz/data/common/BinaryIndexStream.o In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:25: In file included from pwiz/data/common/BinaryIndexStream.hpp:26: In file included from pwiz/data/common/Index.hpp:30: In file included from ./boost/shared_ptr.hpp:17: In file included from ./boost/smart_ptr/shared_ptr.hpp:17: In file included from ./boost/smart_ptr/detail/shared_count.hpp:27: In file included from ./boost/smart_ptr/detail/sp_counted_impl.hpp:27: In file included from ./boost/checked_delete.hpp:15: ./boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'pwiz::data::BinaryIndexStream::Impl' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 36 | delete x; | ^ ./boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete' requested here 154 | boost::checked_delete( p ); | ^ ./boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count' requested here 279 | boost::detail::shared_count( p ).swap( pn ); | ^ ./boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct' requested here 373 | boost::detail::sp_pointer_construct( this, p, pn ); | ^ pwiz/data/common/BinaryIndexStream.cpp:417:82: note: in instantiation of function template specialization 'boost::shared_ptr::shared_ptr' requested here 417 | PWIZ_API_DECL BinaryIndexStream::BinaryIndexStream(shared_ptr isPtr) : impl_(new Impl(isPtr)) {} | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/diff_std.cpp -o pwiz/data/common/diff_std.o In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/Unimod.cpp -o pwiz/data/common/Unimod.o In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:19: In file included from ./boost_aux/boost/enum/base.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:19: In file included from ./boost_aux/boost/enum/base.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/Unimod.cpp:27: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, const std::basic_string &, boost::algorithm::detail::token_finderF>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/common/Unimod.cpp:131:22: note: in instantiation of function template specialization 'boost::algorithm::split>, const std::basic_string &, boost::algorithm::detail::is_classifiedF>' requested here 131 | bal::split(formulaTokens, itr->second, bal::is_space()); | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, const std::basic_string &, boost::algorithm::detail::token_finderF>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/common/Unimod.cpp:131:22: note: in instantiation of function template specialization 'boost::algorithm::split>, const std::basic_string &, boost::algorithm::detail::is_classifiedF>' requested here 131 | bal::split(formulaTokens, itr->second, bal::is_space()); | ^ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/mz5/Configuration_mz5.cpp -o pwiz/data/msdata/mz5/Configuration_mz5.o In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) 3 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/mz5/Connection_mz5.cpp -o pwiz/data/msdata/mz5/Connection_mz5.o In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/mz5/Datastructures_mz5.cpp -o pwiz/data/msdata/mz5/Datastructures_mz5.o In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:25: In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:25: In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:25: In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) 3 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp -o pwiz/data/msdata/mz5/ReferenceRead_mz5.o In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp -o pwiz/data/msdata/mz5/ReferenceWrite_mz5.o In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) 3 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/mz5/Translator_mz5.cpp -o pwiz/data/msdata/mz5/Translator_mz5.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/DefaultReaderList.cpp -o pwiz/data/msdata/DefaultReaderList.o In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:29: In file included from pwiz/data/msdata/DefaultReaderList.hpp:29: In file included from pwiz/data/msdata/Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/DefaultReaderList.cpp:30: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/ChromatogramList_mzML.cpp -o pwiz/data/msdata/ChromatogramList_mzML.o In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/ChromatogramList_mz5.cpp -o pwiz/data/msdata/ChromatogramList_mz5.o In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:28: In file included from pwiz/data/msdata/ChromatogramList_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/examples.cpp -o pwiz/data/msdata/examples.o In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Serializer_mzML.cpp -o pwiz/data/msdata/Serializer_mzML.o In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Serializer_MSn.cpp -o pwiz/data/msdata/Serializer_MSn.o In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:28: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:28: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ pwiz/data/msdata/Serializer_MSn.cpp:44:11: warning: unused variable 'sizeChargeMSn' [-Wunused-const-variable] 44 | const int sizeChargeMSn = 12; // struct Charge{ int z; double mass; } | ^~~~~~~~~~~~~ pwiz/data/msdata/Serializer_MSn.cpp:45:11: warning: unused variable 'sizePeakMSn' [-Wunused-const-variable] 45 | const int sizePeakMSn = 12; // struct Peak{ double mz; float intensity; } | ^~~~~~~~~~~ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Reader.cpp -o pwiz/data/msdata/Reader.o In file included from pwiz/data/msdata/Reader.cpp:26: In file included from pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Reader.cpp:26: In file included from pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Reader.cpp:26: In file included from pwiz/data/msdata/Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Serializer_mz5.cpp -o pwiz/data/msdata/Serializer_mz5.o In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:28: In file included from pwiz/data/msdata/Serializer_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/Serializer_mz5.cpp:29: In file included from pwiz/data/msdata/SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Serializer_MGF.cpp -o pwiz/data/msdata/Serializer_MGF.o In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:29: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:13: In file included from ./boost/spirit/home/karma/char.hpp:13: In file included from ./boost/spirit/home/karma/char/char.hpp:15: In file included from ./boost/spirit/home/support/string_traits.hpp:16: In file included from ./boost/spirit/home/support/container.hpp:21: In file included from ./boost/variant.hpp:17: In file included from ./boost/variant/variant.hpp:30: In file included from ./boost/variant/detail/initializer.hpp:21: In file included from ./boost/detail/reference_content.hpp:19: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::has_nothrow_constructor' requested here 27 | : T::type | ^ ./boost/mpl/not.hpp:41:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd>' requested here 41 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::mpl::not_>' requested here 27 | : T::type | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:25:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>>' requested here 25 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T1)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:50:7: note: in instantiation of template class 'boost::mpl::aux::and_impl, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>, mpl_::bool_, mpl_::bool_, mpl_::bool_>' requested here 50 | : aux::and_impl< | ^ ./boost/mpl/iter_fold_if.hpp:42:11: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 42 | : and_< | ^ ./boost/mpl/iter_fold_if.hpp:85:9: note: in instantiation of template class 'boost::mpl::aux::iter_fold_if_impl, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect, boost::mpl::l_iter>>, mpl_::na, boost::mpl::always>>' requested here 85 | aux::iter_fold_if_impl< | ^ ./boost/mpl/iter_fold_if.hpp:102:20: note: in instantiation of member class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>::result_' requested here 102 | typename result_::state | ^ ./boost/variant/variant.hpp:190:27: note: in instantiation of template class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>' requested here 190 | typedef typename mpl::iter_fold_if< | ^ ./boost/variant/variant.hpp:1250:39: note: in instantiation of template class 'boost::detail::variant::find_fallback_type, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>' requested here 1250 | typedef typename detail::variant::find_fallback_type< | ^ ./boost/spirit/home/support/info.hpp:69:20: note: in instantiation of template class 'boost::variant, boost::recursive_wrapper, boost::recursive_wrapper>, boost::recursive_wrapper>>' requested here 69 | value_type value; | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:29: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:21: In file included from ./boost/spirit/home/karma/binary.hpp:13: In file included from ./boost/spirit/home/karma/binary/binary.hpp:15: In file included from ./boost/spirit/home/support/detail/endian.hpp:19: In file included from ./boost/endian/arithmetic.hpp:30: In file included from ./boost/endian/buffers.hpp:30: In file included from ./boost/endian/detail/endian_store.hpp:12: In file included from ./boost/endian/detail/is_trivially_copyable.hpp:11: ./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 29 | BOOST_HAS_TRIVIAL_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN' 193 | # define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Serializer_mzXML.cpp -o pwiz/data/msdata/Serializer_mzXML.o In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:33: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:33: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumListBase.cpp -o pwiz/data/msdata/SpectrumListBase.o In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ ./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor, std::basic_string>>>' requested here 51 | template struct has_trivial_default_constructor : public has_trivial_constructor {}; | ^ ./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor, std::basic_string>>>' requested here 63 | BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value) | ^ ./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_, std::basic_string>>>, boost::range_detail::select_first, std::basic_string>>, boost::range_detail::default_constructible_unary_fn_wrapper, std::basic_string>>, const std::basic_string &>>' requested here 71 | typedef typename boost::mpl::if_< | ^ ./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen, std::basic_string>>, const std::basic_string &>' requested here 31 | typename default_constructible_unary_fn_gen< | ^ ./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen, std::basic_string>>, std::_Rb_tree_const_iterator, std::basic_string>>>' requested here 42 | typename transform_iterator_gen< | ^ ./boost/range/adaptor/map.hpp:65:22: note: in instantiation of template class 'boost::range_detail::transformed_range, std::basic_string>>, const std::map, std::basic_string>>' requested here 65 | : public transformed_range< | ^ pwiz/data/msdata/SpectrumListBase.cpp:62:38: note: in instantiation of template class 'boost::range_detail::select_first_range, std::basic_string>>' requested here 62 | auto actualIdKeys = actualId | boost::adaptors::map_keys; | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumList_MGF.cpp -o pwiz/data/msdata/SpectrumList_MGF.o In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/msdata/SpectrumList_MGF.cpp:243:38: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 243 | bal::split(charges, value, bal::is_any_of(" ")); | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/msdata/SpectrumList_MGF.cpp:243:38: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 243 | bal::split(charges, value, bal::is_any_of(" ")); | ^ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumList_mzML.cpp -o pwiz/data/msdata/SpectrumList_mzML.o In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:31: ./boost/bind.hpp:36:1: warning: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior. [-W#pragma-messages] 36 | BOOST_PRAGMA_MESSAGE( | ^ ./boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) | ^ :416:2: note: expanded from here 416 | message("The practice of declaring the Bind placeholders (_1, _2, ...) " "in the global namespace is deprecated. Please use " " + using namespace boost::placeholders, " "or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.") | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumList_MSn.cpp -o pwiz/data/msdata/SpectrumList_MSn.o In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ pwiz/data/msdata/SpectrumList_MSn.cpp:641:12: warning: variable 'lineCount' set but not used [-Wunused-but-set-variable] 641 | size_t lineCount = 0; | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumList_mz5.cpp -o pwiz/data/msdata/SpectrumList_mz5.o In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/BinaryDataEncoder.cpp -o pwiz/data/msdata/BinaryDataEncoder.o In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Diff.cpp -o pwiz/data/msdata/Diff.o In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ pwiz/data/msdata/Diff.cpp:321:21: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] 321 | T current = fabs(*i - *j)/denominator; | ^ pwiz/data/msdata/Diff.cpp:355:20: note: in instantiation of function template specialization 'pwiz::data::diff_impl::maxdiff_and_index' requested here 355 | auto max = maxdiff_and_index(static_cast&>(a.data), | ^ pwiz/data/msdata/Diff.cpp:398:5: note: in instantiation of function template specialization 'pwiz::data::diff_impl::diffBinaryDataArray' requested here 398 | diffBinaryDataArray(a, b, a_b, b_a, config); | ^ pwiz/data/msdata/Diff.cpp:321:21: note: use function 'std::abs' instead 321 | T current = fabs(*i - *j)/denominator; | ^~~~ | std::abs 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/MSData.cpp -o pwiz/data/msdata/MSData.o In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/msdata/MSData.cpp:1115:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] 1115 | } | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, const std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/msdata/MSData.cpp:508:12: note: in instantiation of function template specialization 'boost::algorithm::split>, const std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 508 | boost::split(pairs, id, boost::is_any_of(" \t\n\r")); | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, const std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/msdata/MSData.cpp:508:12: note: in instantiation of function template specialization 'boost::algorithm::split>, const std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 508 | boost::split(pairs, id, boost::is_any_of(" \t\n\r")); | ^ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/References.cpp -o pwiz/data/msdata/References.o In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumList_mzXML.cpp -o pwiz/data/msdata/SpectrumList_mzXML.o In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/msdata/SpectrumList_mzXML.cpp:163:35: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 163 | boost::algorithm::split(strCharges, possibleCharges, boost::is_any_of(",")); | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/msdata/SpectrumList_mzXML.cpp:163:35: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 163 | boost::algorithm::split(strCharges, possibleCharges, boost::is_any_of(",")); | ^ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/IO.cpp -o pwiz/data/msdata/IO.o In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/msdata/IO.cpp:1660:2: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 1660 | bool zlib = false; // Handle numpress+zlib | ^ pwiz/data/msdata/IO.cpp:1657:5: note: previous statement is here 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) | ^ pwiz/data/msdata/IO.cpp:2132:35: warning: '&&' within '||' [-Wlogical-op-parentheses] 2132 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ pwiz/data/msdata/IO.cpp:2132:35: note: place parentheses around the '&&' expression to silence this warning 2132 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ^ | ( ) pwiz/data/msdata/IO.cpp:2836:31: warning: '&&' within '||' [-Wlogical-op-parentheses] 2836 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ pwiz/data/msdata/IO.cpp:2836:31: note: place parentheses around the '&&' expression to silence this warning 2836 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ^ | ( ) In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumList_BTDX.cpp -o pwiz/data/msdata/SpectrumList_BTDX.o In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ pwiz/data/msdata/SpectrumList_BTDX.cpp:279:19: warning: private field 'msd_' is not used [-Wunused-private-field] 279 | const MSData& msd_; | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumInfo.cpp -o pwiz/data/msdata/SpectrumInfo.o In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/LegacyAdapter.cpp -o pwiz/data/msdata/LegacyAdapter.o In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:17: ./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 29 | BOOST_HAS_TRIVIAL_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN' 193 | # define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:18: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:19: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:20: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:21: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:22: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:23: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumIterator.cpp -o pwiz/data/msdata/SpectrumIterator.o In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/msdata/SpectrumIterator.cpp:125:20: warning: '&&' within '||' [-Wlogical-op-parentheses] 125 | return (done() && &that.spectrumList_==&pastEndMarker_ || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ pwiz/data/msdata/SpectrumIterator.cpp:125:20: note: place parentheses around the '&&' expression to silence this warning 125 | return (done() && &that.spectrumList_==&pastEndMarker_ || | ^ | ( ) pwiz/data/msdata/SpectrumIterator.cpp:126:45: warning: '&&' within '||' [-Wlogical-op-parentheses] 125 | return (done() && &that.spectrumList_==&pastEndMarker_ || | ~~ 126 | &spectrumList_==&pastEndMarker_ && that.done() || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ pwiz/data/msdata/SpectrumIterator.cpp:126:45: note: place parentheses around the '&&' expression to silence this warning 126 | &spectrumList_==&pastEndMarker_ && that.done() || | ^ | ( ) pwiz/data/msdata/SpectrumIterator.cpp:127:49: warning: '&&' within '||' [-Wlogical-op-parentheses] 126 | &spectrumList_==&pastEndMarker_ && that.done() || | ~~ 127 | &spectrumList_==&that.spectrumList_ && currentIndex_==that.currentIndex_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pwiz/data/msdata/SpectrumIterator.cpp:127:49: note: place parentheses around the '&&' expression to silence this warning 127 | &spectrumList_==&that.spectrumList_ && currentIndex_==that.currentIndex_); | ^ | ( ) pwiz/data/msdata/SpectrumIterator.cpp:141:34: warning: '&&' within '||' [-Wlogical-op-parentheses] 141 | return !scanNumbers_.empty() && currentScanNumber_==scanNumbers_.end() || | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ pwiz/data/msdata/SpectrumIterator.cpp:141:34: note: place parentheses around the '&&' expression to silence this warning 141 | return !scanNumbers_.empty() && currentScanNumber_==scanNumbers_.end() || | ^ | ( ) In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/MSDataFile.cpp -o pwiz/data/msdata/MSDataFile.o In file included from pwiz/data/msdata/MSDataFile.cpp:26: In file included from pwiz/data/msdata/MSDataFile.hpp:30: In file included from pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:26: In file included from pwiz/data/msdata/MSDataFile.hpp:30: In file included from pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:26: In file included from pwiz/data/msdata/MSDataFile.hpp:30: In file included from pwiz/data/msdata/Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:36: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:36: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/MSNumpress.cpp -o pwiz/data/msdata/MSNumpress.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumListCache.cpp -o pwiz/data/msdata/SpectrumListCache.o In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:28: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:29: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:30: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:30: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ ./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_copy_constructor' requested here 52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type) | ^ ./boost/serialization/strong_typedef.hpp:39:54: note: expanded from macro 'BOOST_STRONG_TYPEDEF' 39 | explicit D(const T& t_) BOOST_NOEXCEPT_IF(boost::has_nothrow_copy_constructor::value) : t(t_) {} \ | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:29: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ ./boost/type_traits/has_nothrow_constructor.hpp:69:68: note: in instantiation of template class 'boost::has_nothrow_constructor' requested here 69 | template struct has_nothrow_default_constructor : public has_nothrow_constructor{}; | ^ ./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_default_constructor' requested here 52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type) | ^ ./boost/serialization/strong_typedef.hpp:40:34: note: expanded from macro 'BOOST_STRONG_TYPEDEF' 40 | D() BOOST_NOEXCEPT_IF(boost::has_nothrow_default_constructor::value) : t() {} \ | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:28: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ ./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_assign' requested here 52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type) | ^ ./boost/serialization/strong_typedef.hpp:42:57: note: expanded from macro 'BOOST_STRONG_TYPEDEF' 42 | D& operator=(const D& rhs) BOOST_NOEXCEPT_IF(boost::has_nothrow_assign::value) {t = rhs.t; return *this;} \ | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:29: In file included from pwiz/data/msdata/SpectrumListWrapper.hpp:28: In file included from ./pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 35 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Index_mzML.cpp -o pwiz/data/msdata/Index_mzML.o In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumWorkerThreads.cpp -o pwiz/data/msdata/SpectrumWorkerThreads.o In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:27: In file included from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28: In file included from ./pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:28: ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp:47:14: warning: extra ';' inside a struct [-Wextra-semi] 47 | ); | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:30: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:30: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:30: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:30: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ ./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_copy_constructor' requested here 52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type) | ^ ./boost/serialization/strong_typedef.hpp:39:54: note: expanded from macro 'BOOST_STRONG_TYPEDEF' 39 | explicit D(const T& t_) BOOST_NOEXCEPT_IF(boost::has_nothrow_copy_constructor::value) : t(t_) {} \ | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ ./boost/type_traits/has_nothrow_constructor.hpp:69:68: note: in instantiation of template class 'boost::has_nothrow_constructor' requested here 69 | template struct has_nothrow_default_constructor : public has_nothrow_constructor{}; | ^ ./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_default_constructor' requested here 52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type) | ^ ./boost/serialization/strong_typedef.hpp:40:34: note: expanded from macro 'BOOST_STRONG_TYPEDEF' 40 | D() BOOST_NOEXCEPT_IF(boost::has_nothrow_default_constructor::value) : t() {} \ | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ ./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_assign' requested here 52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type) | ^ ./boost/serialization/strong_typedef.hpp:42:57: note: expanded from macro 'BOOST_STRONG_TYPEDEF' 42 | D& operator=(const D& rhs) BOOST_NOEXCEPT_IF(boost::has_nothrow_assign::value) {t = rhs.t; return *this;} \ | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 36 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/IdentDataFile.cpp -o pwiz/data/identdata/IdentDataFile.o In file included from pwiz/data/identdata/IdentDataFile.cpp:25: In file included from pwiz/data/identdata/IdentDataFile.hpp:29: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/IdentData.cpp -o pwiz/data/identdata/IdentData.o In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/IdentData.cpp:31: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/DefaultReaderList.cpp -o pwiz/data/identdata/DefaultReaderList.o In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:29: In file included from pwiz/data/identdata/DefaultReaderList.hpp:29: In file included from pwiz/data/identdata/Reader.hpp:28: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/Reader.cpp -o pwiz/data/identdata/Reader.o In file included from pwiz/data/identdata/Reader.cpp:26: In file included from pwiz/data/identdata/Reader.hpp:28: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/Serializer_protXML.cpp -o pwiz/data/identdata/Serializer_protXML.o In file included from pwiz/data/identdata/Serializer_protXML.cpp:28: In file included from pwiz/data/identdata/Serializer_protXML.hpp:29: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:40: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ pwiz/data/identdata/Serializer_protXML.cpp:97:9: warning: field 'strict' will be initialized after field 'nPeptides' [-Wreorder-ctor] 96 | ilr(iterationListenerRegistry), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | nPeptides(0) 97 | strict(strict), | ^~~~~~~~~~~~~~ | SourceFilesPtr(returnValueSourceFiles) 98 | nPeptides(0), | ~~~~~~~~~~~~ | ilr(iterationListenerRegistry) 99 | SourceFilesPtr(returnValueSourceFiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | strict(strict) In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ pwiz/data/identdata/Serializer_protXML.cpp:476:10: warning: private field 'readSpectrumQueries' is not used [-Wunused-private-field] 476 | bool readSpectrumQueries; | ^ pwiz/data/identdata/Serializer_protXML.cpp:477:38: warning: private field 'ilr' is not used [-Wunused-private-field] 477 | const IterationListenerRegistry* ilr; | ^ 35 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/Serializer_pepXML.cpp -o pwiz/data/identdata/Serializer_pepXML.o In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25: In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:36: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:36: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ ./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor' requested here 51 | template struct has_trivial_default_constructor : public has_trivial_constructor {}; | ^ ./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor' requested here 63 | BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value) | ^ ./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_, pwiz::identdata::(anonymous namespace)::EnzymePtr_name, boost::range_detail::default_constructible_unary_fn_wrapper>>' requested here 71 | typedef typename boost::mpl::if_< | ^ ./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen>' requested here 31 | typename default_constructible_unary_fn_gen< | ^ ./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen *, std::vector>>>' requested here 42 | typename transform_iterator_gen< | ^ pwiz/data/identdata/Serializer_pepXML.cpp:415:55: note: in instantiation of template class 'boost::range_detail::transformed_range>>' requested here 415 | string enzymeName = bal::join(sip.enzymes.enzymes | boost::adaptors::transformed(EnzymePtr_name()), " + "); | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:36: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ ./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor' requested here 51 | template struct has_trivial_default_constructor : public has_trivial_constructor {}; | ^ ./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor' requested here 63 | BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value) | ^ ./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_, pwiz::identdata::(anonymous namespace)::EnzymePtr_specificity, boost::range_detail::default_constructible_unary_fn_wrapper>' requested here 71 | typedef typename boost::mpl::if_< | ^ ./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen' requested here 31 | typename default_constructible_unary_fn_gen< | ^ ./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen *, std::vector>>>' requested here 42 | typename transform_iterator_gen< | ^ pwiz/data/identdata/Serializer_pepXML.cpp:418:73: note: in instantiation of template class 'boost::range_detail::transformed_range>>' requested here 418 | int minSpecificity = *boost::range::min_element(sip.enzymes.enzymes | boost::adaptors::transformed(EnzymePtr_specificity())); | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:36: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ ./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor' requested here 51 | template struct has_trivial_default_constructor : public has_trivial_constructor {}; | ^ ./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor' requested here 63 | BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value) | ^ ./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_, pwiz::identdata::(anonymous namespace)::EnzymePtr_missedCleavages, boost::range_detail::default_constructible_unary_fn_wrapper>' requested here 71 | typedef typename boost::mpl::if_< | ^ ./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen' requested here 31 | typename default_constructible_unary_fn_gen< | ^ ./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen *, std::vector>>>' requested here 42 | typename transform_iterator_gen< | ^ pwiz/data/identdata/Serializer_pepXML.cpp:504:81: note: in instantiation of template class 'boost::range_detail::transformed_range>>' requested here 504 | int maxMissedCleavages = *boost::range::max_element(sip.enzymes.enzymes | boost::adaptors::transformed(EnzymePtr_missedCleavages())); | ^ pwiz/data/identdata/Serializer_pepXML.cpp:561:104: warning: adding 'char' to a string does not append to the string [-Wstring-plus-int] 561 | default: throw runtime_error("[write_search_summary] Unsupported AA residue: " + aa); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ pwiz/data/identdata/Serializer_pepXML.cpp:561:104: note: use array indexing to silence this warning 561 | default: throw runtime_error("[write_search_summary] Unsupported AA residue: " + aa); | ^ | & [ ] In file included from pwiz/data/identdata/Serializer_pepXML.cpp:36: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ ./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor' requested here 51 | template struct has_trivial_default_constructor : public has_trivial_constructor {}; | ^ ./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor' requested here 63 | BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value) | ^ ./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_, pwiz::identdata::(anonymous namespace)::CVParam_name, boost::range_detail::default_constructible_unary_fn_wrapper>>' requested here 71 | typedef typename boost::mpl::if_< | ^ ./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen>' requested here 31 | typename default_constructible_unary_fn_gen< | ^ ./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen>>' requested here 42 | typename transform_iterator_gen< | ^ pwiz/data/identdata/Serializer_pepXML.cpp:586:65: note: in instantiation of template class 'boost::range_detail::transformed_range>' requested here 586 | string description = bal::join(possibleMods | boost::adaptors::transformed(CVParam_name()), ", "); | ^ pwiz/data/identdata/Serializer_pepXML.cpp:1546:5: warning: non-void function does not return a value in all control paths [-Wreturn-type] 1546 | } | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2, const char *, const char *>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2, const char *, const char *>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, const char *const &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/identdata/Serializer_pepXML.cpp:113:18: note: in instantiation of function template specialization 'boost::algorithm::split>, const char *const &, boost::algorithm::detail::is_any_ofF>' requested here 113 | bal::split(names, ast.softwareNames, bal::is_any_of(";")); | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2, const char *, const char *>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2, const char *, const char *>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, const char *const &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/identdata/Serializer_pepXML.cpp:113:18: note: in instantiation of function template specialization 'boost::algorithm::split>, const char *const &, boost::algorithm::detail::is_any_ofF>' requested here 113 | bal::split(names, ast.softwareNames, bal::is_any_of(";")); | ^ pwiz/data/identdata/Serializer_pepXML.cpp:995:25: warning: private field '_cvTranslator' is not used [-Wunused-private-field] 995 | const CVTranslator& _cvTranslator; | ^ pwiz/data/identdata/Serializer_pepXML.cpp:1450:25: warning: private field '_cvTranslator' is not used [-Wunused-private-field] 1450 | const CVTranslator& _cvTranslator; | ^ pwiz/data/identdata/Serializer_pepXML.cpp:1796:25: warning: private field '_cvTranslator' is not used [-Wunused-private-field] 1796 | const CVTranslator& _cvTranslator; | ^ pwiz/data/identdata/Serializer_pepXML.cpp:1970:38: warning: private field 'ilr' is not used [-Wunused-private-field] 1970 | const IterationListenerRegistry* ilr; | ^ 44 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/Serializer_mzid.cpp -o pwiz/data/identdata/Serializer_mzid.o In file included from pwiz/data/identdata/Serializer_mzid.cpp:26: In file included from pwiz/data/identdata/Serializer_mzid.hpp:28: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/IO.cpp -o pwiz/data/identdata/IO.o In file included from pwiz/data/identdata/IO.cpp:26: In file included from pwiz/data/identdata/IO.hpp:27: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/References.cpp -o pwiz/data/identdata/References.o In file included from pwiz/data/identdata/References.cpp:25: In file included from pwiz/data/identdata/References.hpp:29: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/identdata/References.cpp:149:13: warning: add explicit braces to avoid dangling else [-Wdangling-else] 149 | BOOST_FOREACH(OrganizationPtr& org, static_cast(c.get())->affiliations) | ^ ./boost/foreach.hpp:1107:108: note: expanded from macro 'BOOST_FOREACH' 1107 | if (boost::foreach_detail_::auto_any_t BOOST_FOREACH_ID(_foreach_col) = BOOST_FOREACH_CONTAIN(COL)) {} else \ | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/MascotReader.cpp -o pwiz/data/identdata/MascotReader.o In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:26: In file included from pwiz/data/identdata/MascotReader.hpp:28: In file included from ./pwiz/data/identdata/Reader.hpp:28: In file included from ./pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:26: pwiz/data/identdata/MascotReader.hpp:62:11: warning: private field 'pimpl' is not used [-Wunused-private-field] 62 | Impl* pimpl; | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/proteome/Modification.cpp -o pwiz/data/proteome/Modification.o In file included from pwiz/data/proteome/Modification.cpp:27: pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/proteome/Modification.cpp:89:5: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 89 | auto_ptr formula_; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:108:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 108 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:100:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 100 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/proteome/Digestion.cpp -o pwiz/data/proteome/Digestion.o In file included from pwiz/data/proteome/Digestion.cpp:27: In file included from pwiz/data/proteome/Digestion.hpp:32: In file included from pwiz/data/proteome/Peptide.hpp:183: pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/proteome/Digestion.cpp:33: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>, boost::algorithm::is_equal>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>, boost::algorithm::is_equal>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>, boost::algorithm::is_equal>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>, boost::algorithm::is_equal>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:98:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>, boost::algorithm::is_equal>>' requested here 98 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:104:21: note: in instantiation of function template specialization 'boost::algorithm::find_iterator<__gnu_cxx::__normal_iterator>>::find_iterator>, boost::algorithm::is_equal>>' requested here 104 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:71:40: note: in instantiation of function template specialization 'boost::algorithm::iter_find>>>, const std::basic_string &, boost::algorithm::detail::first_finderF<__gnu_cxx::__normal_iterator>, boost::algorithm::is_equal>>' requested here 71 | return ::boost::algorithm::iter_find( | ^ pwiz/data/proteome/Digestion.cpp:468:14: note: in instantiation of function template specialization 'boost::algorithm::find_all>>>, const std::basic_string &, std::basic_string>' requested here 468 | bal::find_all(instances, sequence_, peptide.sequence()); | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>, boost::algorithm::is_equal>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>, boost::algorithm::is_equal>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>, boost::algorithm::is_equal>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:98:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>, boost::algorithm::is_equal>>' requested here 98 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:104:21: note: in instantiation of function template specialization 'boost::algorithm::find_iterator<__gnu_cxx::__normal_iterator>>::find_iterator>, boost::algorithm::is_equal>>' requested here 104 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:71:40: note: in instantiation of function template specialization 'boost::algorithm::iter_find>>>, const std::basic_string &, boost::algorithm::detail::first_finderF<__gnu_cxx::__normal_iterator>, boost::algorithm::is_equal>>' requested here 71 | return ::boost::algorithm::iter_find( | ^ pwiz/data/proteome/Digestion.cpp:468:14: note: in instantiation of function template specialization 'boost::algorithm::find_all>>>, const std::basic_string &, std::basic_string>' requested here 468 | bal::find_all(instances, sequence_, peptide.sequence()); | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/proteome/Peptide.cpp -o pwiz/data/proteome/Peptide.o In file included from pwiz/data/proteome/Peptide.cpp:26: In file included from pwiz/data/proteome/Peptide.hpp:183: pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/proteome/Peptide.cpp:32: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/proteome/Peptide.cpp:337:13: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 337 | split(tokens, massStr, bal::is_any_of(",")); | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/proteome/Peptide.cpp:337:13: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 337 | split(tokens, massStr, bal::is_any_of(",")); | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/proteome/AminoAcid.cpp -o pwiz/data/proteome/AminoAcid.o In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:30: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/minimxml/XMLWriter.cpp -o pwiz/utility/minimxml/XMLWriter.o In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:29: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:13: In file included from ./boost/spirit/home/karma/char.hpp:13: In file included from ./boost/spirit/home/karma/char/char.hpp:15: In file included from ./boost/spirit/home/support/string_traits.hpp:16: In file included from ./boost/spirit/home/support/container.hpp:21: In file included from ./boost/variant.hpp:17: In file included from ./boost/variant/variant.hpp:30: In file included from ./boost/variant/detail/initializer.hpp:21: In file included from ./boost/detail/reference_content.hpp:19: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:29: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:13: In file included from ./boost/spirit/home/karma/char.hpp:13: In file included from ./boost/spirit/home/karma/char/char.hpp:15: In file included from ./boost/spirit/home/support/string_traits.hpp:16: In file included from ./boost/spirit/home/support/container.hpp:21: In file included from ./boost/variant.hpp:17: In file included from ./boost/variant/variant.hpp:40: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::has_nothrow_constructor' requested here 27 | : T::type | ^ ./boost/mpl/not.hpp:41:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd>' requested here 41 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::mpl::not_>' requested here 27 | : T::type | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:25:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>>' requested here 25 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T1)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:50:7: note: in instantiation of template class 'boost::mpl::aux::and_impl, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>, mpl_::bool_, mpl_::bool_, mpl_::bool_>' requested here 50 | : aux::and_impl< | ^ ./boost/mpl/iter_fold_if.hpp:42:11: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 42 | : and_< | ^ ./boost/mpl/iter_fold_if.hpp:85:9: note: in instantiation of template class 'boost::mpl::aux::iter_fold_if_impl, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect, boost::mpl::l_iter>>, mpl_::na, boost::mpl::always>>' requested here 85 | aux::iter_fold_if_impl< | ^ ./boost/mpl/iter_fold_if.hpp:102:20: note: in instantiation of member class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>::result_' requested here 102 | typename result_::state | ^ ./boost/variant/variant.hpp:190:27: note: in instantiation of template class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>' requested here 190 | typedef typename mpl::iter_fold_if< | ^ ./boost/variant/variant.hpp:1250:39: note: in instantiation of template class 'boost::detail::variant::find_fallback_type, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>' requested here 1250 | typedef typename detail::variant::find_fallback_type< | ^ ./boost/spirit/home/support/info.hpp:69:20: note: in instantiation of template class 'boost::variant, boost::recursive_wrapper, boost::recursive_wrapper>, boost::recursive_wrapper>>' requested here 69 | value_type value; | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:29: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:21: In file included from ./boost/spirit/home/karma/binary.hpp:13: In file included from ./boost/spirit/home/karma/binary/binary.hpp:15: In file included from ./boost/spirit/home/support/detail/endian.hpp:19: In file included from ./boost/endian/arithmetic.hpp:30: In file included from ./boost/endian/buffers.hpp:30: In file included from ./boost/endian/detail/endian_store.hpp:12: In file included from ./boost/endian/detail/is_trivially_copyable.hpp:11: ./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 29 | BOOST_HAS_TRIVIAL_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN' 193 | # define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/minimxml/SAXParser.cpp -o pwiz/utility/minimxml/SAXParser.o In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/chemistry/Chemistry.cpp -o pwiz/utility/chemistry/Chemistry.o In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:29: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/chemistry/ChemistryData.cpp -o pwiz/utility/chemistry/ChemistryData.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/chemistry/MZTolerance.cpp -o pwiz/utility/chemistry/MZTolerance.o In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/IntegerSet.cpp -o pwiz/utility/misc/IntegerSet.o In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/utility/misc/IntegerSet.cpp:307:63: warning: '&&' within '||' [-Wlogical-op-parentheses] 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ~~ pwiz/utility/misc/IntegerSet.cpp:307:63: note: place parentheses around the '&&' expression to silence this warning 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ^ | ( ) pwiz/utility/misc/IntegerSet.cpp:308:23: warning: '&&' within '||' [-Wlogical-op-parentheses] 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~ 308 | it_==end_ && that.it_==nothing_.end()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ pwiz/utility/misc/IntegerSet.cpp:308:23: note: place parentheses around the '&&' expression to silence this warning 308 | it_==end_ && that.it_==nothing_.end()); | ^ | ( ) In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/Base64.cpp -o pwiz/utility/misc/Base64.o In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/BinaryData.cpp -o pwiz/utility/misc/BinaryData.o pwiz/utility/misc/BinaryData.cpp:303:9: warning: unknown pragma ignored [-Wunknown-pragmas] 303 | #pragma managed(push, off) | ^ pwiz/utility/misc/BinaryData.cpp:475:9: warning: unknown pragma ignored [-Wunknown-pragmas] 475 | #pragma managed(pop) | ^ 2 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/IterationListener.cpp -o pwiz/utility/misc/IterationListener.o In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/MSIHandler.cpp -o pwiz/utility/misc/MSIHandler.o In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/Filesystem.cpp -o pwiz/utility/misc/Filesystem.o In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:53: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:58: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:13: In file included from ./boost/spirit/home/karma/char.hpp:13: In file included from ./boost/spirit/home/karma/char/char.hpp:15: In file included from ./boost/spirit/home/support/string_traits.hpp:16: In file included from ./boost/spirit/home/support/container.hpp:21: In file included from ./boost/variant.hpp:17: In file included from ./boost/variant/variant.hpp:30: In file included from ./boost/variant/detail/initializer.hpp:21: In file included from ./boost/detail/reference_content.hpp:19: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::has_nothrow_constructor' requested here 27 | : T::type | ^ ./boost/mpl/not.hpp:41:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd>' requested here 41 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::mpl::not_>' requested here 27 | : T::type | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:25:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>>' requested here 25 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T1)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:50:7: note: in instantiation of template class 'boost::mpl::aux::and_impl, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>, mpl_::bool_, mpl_::bool_, mpl_::bool_>' requested here 50 | : aux::and_impl< | ^ ./boost/mpl/iter_fold_if.hpp:42:11: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 42 | : and_< | ^ ./boost/mpl/iter_fold_if.hpp:85:9: note: in instantiation of template class 'boost::mpl::aux::iter_fold_if_impl, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect, boost::mpl::l_iter>>, mpl_::na, boost::mpl::always>>' requested here 85 | aux::iter_fold_if_impl< | ^ ./boost/mpl/iter_fold_if.hpp:102:20: note: in instantiation of member class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>::result_' requested here 102 | typename result_::state | ^ ./boost/variant/variant.hpp:190:27: note: in instantiation of template class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>' requested here 190 | typedef typename mpl::iter_fold_if< | ^ ./boost/variant/variant.hpp:1250:39: note: in instantiation of template class 'boost::detail::variant::find_fallback_type, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>' requested here 1250 | typedef typename detail::variant::find_fallback_type< | ^ ./boost/spirit/home/support/info.hpp:69:20: note: in instantiation of template class 'boost::variant, boost::recursive_wrapper, boost::recursive_wrapper>, boost::recursive_wrapper>>' requested here 69 | value_type value; | ^ In file included from pwiz/utility/misc/Filesystem.cpp:58: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:21: In file included from ./boost/spirit/home/karma/binary.hpp:13: In file included from ./boost/spirit/home/karma/binary/binary.hpp:15: In file included from ./boost/spirit/home/support/detail/endian.hpp:19: In file included from ./boost/endian/arithmetic.hpp:30: In file included from ./boost/endian/buffers.hpp:30: In file included from ./boost/endian/detail/endian_store.hpp:12: In file included from ./boost/endian/detail/is_trivially_copyable.hpp:11: ./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 29 | BOOST_HAS_TRIVIAL_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN' 193 | # define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/TabReader.cpp -o pwiz/utility/misc/TabReader.o In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/utility/misc/TabReader.cpp:44:22: warning: assigning field to itself [-Wself-assign-field] 44 | comment_char = comment_char; | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/random_access_compressed_ifstream.cpp -o pwiz/utility/misc/random_access_compressed_ifstream.o In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/SHA1.cpp -o pwiz/utility/misc/SHA1.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/SHA1Calculator.cpp -o pwiz/utility/misc/SHA1Calculator.o In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/sha1calc.cpp -o pwiz/utility/misc/sha1calc.o In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:30: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:30: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/String.cpp -o pwiz/utility/misc/String.o In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/String.cpp:24: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:13: In file included from ./boost/spirit/home/karma/char.hpp:13: In file included from ./boost/spirit/home/karma/char/char.hpp:15: In file included from ./boost/spirit/home/support/string_traits.hpp:16: In file included from ./boost/spirit/home/support/container.hpp:21: In file included from ./boost/variant.hpp:17: In file included from ./boost/variant/variant.hpp:30: In file included from ./boost/variant/detail/initializer.hpp:21: In file included from ./boost/detail/reference_content.hpp:19: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/utility/misc/String.cpp:24: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:13: In file included from ./boost/spirit/home/karma/char.hpp:13: In file included from ./boost/spirit/home/karma/char/char.hpp:15: In file included from ./boost/spirit/home/support/string_traits.hpp:16: In file included from ./boost/spirit/home/support/container.hpp:21: In file included from ./boost/variant.hpp:17: In file included from ./boost/variant/variant.hpp:40: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::has_nothrow_constructor' requested here 27 | : T::type | ^ ./boost/mpl/not.hpp:41:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd>' requested here 41 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::mpl::not_>' requested here 27 | : T::type | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:25:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>>' requested here 25 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T1)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:50:7: note: in instantiation of template class 'boost::mpl::aux::and_impl, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>, mpl_::bool_, mpl_::bool_, mpl_::bool_>' requested here 50 | : aux::and_impl< | ^ ./boost/mpl/iter_fold_if.hpp:42:11: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 42 | : and_< | ^ ./boost/mpl/iter_fold_if.hpp:85:9: note: in instantiation of template class 'boost::mpl::aux::iter_fold_if_impl, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect, boost::mpl::l_iter>>, mpl_::na, boost::mpl::always>>' requested here 85 | aux::iter_fold_if_impl< | ^ ./boost/mpl/iter_fold_if.hpp:102:20: note: in instantiation of member class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>::result_' requested here 102 | typename result_::state | ^ ./boost/variant/variant.hpp:190:27: note: in instantiation of template class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>' requested here 190 | typedef typename mpl::iter_fold_if< | ^ ./boost/variant/variant.hpp:1250:39: note: in instantiation of template class 'boost::detail::variant::find_fallback_type, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>' requested here 1250 | typedef typename detail::variant::find_fallback_type< | ^ ./boost/spirit/home/support/info.hpp:69:20: note: in instantiation of template class 'boost::variant, boost::recursive_wrapper, boost::recursive_wrapper>, boost::recursive_wrapper>>' requested here 69 | value_type value; | ^ In file included from pwiz/utility/misc/String.cpp:24: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:21: In file included from ./boost/spirit/home/karma/binary.hpp:13: In file included from ./boost/spirit/home/karma/binary/binary.hpp:15: In file included from ./boost/spirit/home/support/detail/endian.hpp:19: In file included from ./boost/endian/arithmetic.hpp:30: In file included from ./boost/endian/buffers.hpp:30: In file included from ./boost/endian/detail/endian_store.hpp:12: In file included from ./boost/endian/detail/is_trivially_copyable.hpp:11: ./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 29 | BOOST_HAS_TRIVIAL_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN' 193 | # define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/thread/src/pthread/once.cpp -o boost/libs/thread/src/pthread/once.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/thread/src/pthread/thread.cpp -o boost/libs/thread/src/pthread/thread.o In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:19: In file included from ./boost/thread/future.hpp:51: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:19: In file included from ./boost/thread/future.hpp:51: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:19: In file included from ./boost/thread/future.hpp:65: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:19: In file included from ./boost/thread/future.hpp:65: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:19: In file included from ./boost/thread/future.hpp:65: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ boost/libs/thread/src/pthread/thread.cpp:539:24: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 539 | boost::split(key_val, line, boost::is_any_of(":")); | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:19: In file included from ./boost/thread/future.hpp:65: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ boost/libs/thread/src/pthread/thread.cpp:539:24: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 539 | boost::split(key_val, line, boost::is_any_of(":")); | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o mzR.so RcppPwiz.o RcppPwizModule.o RcppIdent.o RcppIdentModule.o ./boost/libs/system/src/error_code.o ./boost/libs/regex/src/posix_api.o ./boost/libs/regex/src/regex_debug.o ./boost/libs/regex/src/regex.o ./boost/libs/regex/src/wide_posix_api.o ./boost/libs/regex/src/static_mutex.o ./boost/libs/iostreams/src/zlib.o ./boost/libs/iostreams/src/file_descriptor.o ./boost/libs/filesystem/src/operations.o ./boost/libs/filesystem/src/directory.o ./boost/libs/filesystem/src/exception.o ./boost/libs/filesystem/src/path.o ./boost/libs/filesystem/src/unique_path.o ./boost/libs/filesystem/src/utf8_codecvt_facet.o ./boost/libs/chrono/src/chrono.o ./boost/libs/chrono/src/process_cpu_clocks.o ./boost/libs/chrono/src/thread_clock.o ./pwiz/data/msdata/Version.o ./pwiz/data/identdata/Version.o ./pwiz/data/common/MemoryIndex.o ./pwiz/data/common/CVTranslator.o ./pwiz/data/common/cv.o ./pwiz/data/common/ParamTypes.o ./pwiz/data/common/BinaryIndexStream.o ./pwiz/data/common/diff_std.o ./pwiz/data/common/Unimod.o ./pwiz/data/msdata/mz5/Configuration_mz5.o ./pwiz/data/msdata/mz5/Connection_mz5.o ./pwiz/data/msdata/mz5/Datastructures_mz5.o ./pwiz/data/msdata/mz5/ReferenceRead_mz5.o ./pwiz/data/msdata/mz5/ReferenceWrite_mz5.o ./pwiz/data/msdata/mz5/Translator_mz5.o ./pwiz/data/msdata/DefaultReaderList.o ./pwiz/data/msdata/ChromatogramList_mzML.o ./pwiz/data/msdata/ChromatogramList_mz5.o ./pwiz/data/msdata/examples.o ./pwiz/data/msdata/Serializer_mzML.o ./pwiz/data/msdata/Serializer_MSn.o ./pwiz/data/msdata/Reader.o ./pwiz/data/msdata/Serializer_mz5.o ./pwiz/data/msdata/Serializer_MGF.o ./pwiz/data/msdata/Serializer_mzXML.o ./pwiz/data/msdata/SpectrumListBase.o ./pwiz/data/msdata/SpectrumList_MGF.o ./pwiz/data/msdata/SpectrumList_mzML.o ./pwiz/data/msdata/SpectrumList_MSn.o ./pwiz/data/msdata/SpectrumList_mz5.o ./pwiz/data/msdata/BinaryDataEncoder.o ./pwiz/data/msdata/Diff.o ./pwiz/data/msdata/MSData.o ./pwiz/data/msdata/References.o ./pwiz/data/msdata/SpectrumList_mzXML.o ./pwiz/data/msdata/IO.o ./pwiz/data/msdata/SpectrumList_BTDX.o ./pwiz/data/msdata/SpectrumInfo.o ./pwiz/data/msdata/LegacyAdapter.o ./pwiz/data/msdata/SpectrumIterator.o ./pwiz/data/msdata/MSDataFile.o ./pwiz/data/msdata/MSNumpress.o ./pwiz/data/msdata/SpectrumListCache.o ./pwiz/data/msdata/Index_mzML.o ./pwiz/data/msdata/SpectrumWorkerThreads.o ./pwiz/data/identdata/IdentDataFile.o ./pwiz/data/identdata/IdentData.o ./pwiz/data/identdata/DefaultReaderList.o ./pwiz/data/identdata/Reader.o ./pwiz/data/identdata/Serializer_protXML.o ./pwiz/data/identdata/Serializer_pepXML.o ./pwiz/data/identdata/Serializer_mzid.o ./pwiz/data/identdata/IO.o ./pwiz/data/identdata/References.o ./pwiz/data/identdata/MascotReader.o ./pwiz/data/proteome/Modification.o ./pwiz/data/proteome/Digestion.o ./pwiz/data/proteome/Peptide.o ./pwiz/data/proteome/AminoAcid.o ./pwiz/utility/minimxml/XMLWriter.o ./pwiz/utility/minimxml/SAXParser.o ./pwiz/utility/chemistry/Chemistry.o ./pwiz/utility/chemistry/ChemistryData.o ./pwiz/utility/chemistry/MZTolerance.o ./pwiz/utility/misc/IntegerSet.o ./pwiz/utility/misc/Base64.o ./pwiz/utility/misc/BinaryData.o ./pwiz/utility/misc/IterationListener.o ./pwiz/utility/misc/MSIHandler.o ./pwiz/utility/misc/Filesystem.o ./pwiz/utility/misc/TabReader.o ./pwiz/utility/misc/random_access_compressed_ifstream.o ./pwiz/utility/misc/SHA1.o ./pwiz/utility/misc/SHA1Calculator.o ./pwiz/utility/misc/sha1calc.o ./pwiz/utility/misc/String.o ./RcppExports.o ./boost/libs/thread/src/pthread/once.o ./boost/libs/thread/src/pthread/thread.o -lpthread /home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/lib/libhdf5_cpp.a /home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/lib/libhdf5.a -lcrypto -lcurl -lsz -laec -lz -ldl -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgI9pQU/R.INSTALL3c34d43f6cfed3/mzR/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-mzR/00new/mzR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f40f9967191 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f40f9d339e3 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f40f9d21faa in H5T__register /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f40f9d0a3da in H5T__register_int /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f40f9d0106d in H5T__init_package /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f40f9cf9e70 in H5T_init /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f40f950ee62 in H5_init_library /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f40f951507c in H5open /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f40f9493476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7f40f8b9ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7f40f8b9ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7f411374629d in call_init elf/dl-init.c:74:3 #12 0x7f411374629d in call_init elf/dl-init.c:26:1 #13 0x7f411374638b in _dl_init elf/dl-init.c:121:5 #14 0x7f4113743535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7f411374cf2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7f41137434a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7f411374d2a7 in _dl_open elf/dl-open.c:880:17 #18 0x7f4111fb1f97 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7f41137434a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7f41137435ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7f4111fb1aa6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7f4111fb2048 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7f4111fb2048 in dlopen dlfcn/dlopen.c:81:12 #24 0x55b8674372f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7f41129127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7f4112911bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7f4112ced889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7f4112ca1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7f4112ca061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7f4112caad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #31 0x7f4112ca686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #32 0x7f4112ca0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #33 0x7f4112ca0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7f4112de4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #35 0x7f4112de7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #36 0x7f4112de75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #37 0x7f4112de785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #38 0x55b8674b6dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #39 0x7f4111f4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #40 0x7f4111f4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #41 0x55b8673d3370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f40f9962679 in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f40f9cd9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f40f9961dd7 in H5I_clear_type /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f40f9d0c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f40f950ff61 in H5_term_library /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f40f95151a0 in H5close /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7f40f9492fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7f4111f66260 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7f4111f66319 in exit stdlib/exit.c:138:3 #9 0x7f41131971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7f41131a1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7f4112de75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7f4112de75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7f4112de785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x55b8674b6dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7f4111f4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7f4111f4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x55b8673d3370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f6e85167191 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f6e855339e3 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f6e85521faa in H5T__register /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f6e8550a3da in H5T__register_int /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f6e8550106d in H5T__init_package /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f6e854f9e70 in H5T_init /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f6e84d0ee62 in H5_init_library /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f6e84d1507c in H5open /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f6e84c93476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7f6e8439ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7f6e8439ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7f6e9eec329d in call_init elf/dl-init.c:74:3 #12 0x7f6e9eec329d in call_init elf/dl-init.c:26:1 #13 0x7f6e9eec338b in _dl_init elf/dl-init.c:121:5 #14 0x7f6e9eec0535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7f6e9eec9f2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7f6e9eec04a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7f6e9eeca2a7 in _dl_open elf/dl-open.c:880:17 #18 0x7f6e9d7b1f97 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7f6e9eec04a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7f6e9eec05ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7f6e9d7b1aa6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7f6e9d7b2048 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7f6e9d7b2048 in dlopen dlfcn/dlopen.c:81:12 #24 0x5579fbe742f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7f6e9e1127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7f6e9e111bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7f6e9e4ed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7f6e9e4a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7f6e9e4a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7f6e9e4aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #31 0x7f6e9e4a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #32 0x7f6e9e4a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #33 0x7f6e9e4a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7f6e9e5e4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #35 0x7f6e9e5e7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #36 0x7f6e9e5e75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #37 0x7f6e9e5e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #38 0x5579fbef3dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #39 0x7f6e9d74dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #40 0x7f6e9d74de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #41 0x5579fbe10370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f6e85162679 in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f6e854d9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f6e85161dd7 in H5I_clear_type /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f6e8550c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f6e84d0ff61 in H5_term_library /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f6e84d151a0 in H5close /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7f6e84c92fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7f6e9d766260 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7f6e9d766319 in exit stdlib/exit.c:138:3 #9 0x7f6e9e9971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7f6e9e9a1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7f6e9e5e75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7f6e9e5e75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7f6e9e5e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x5579fbef3dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7f6e9d74dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7f6e9d74de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x5579fbe10370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** testing if installed package keeps a record of temporary installation path * DONE (mzR) begin installing package ‘MSnbase’ * installing *source* package ‘MSnbase’ ... ** this is package ‘MSnbase’ version ‘2.32.0’ ** package ‘MSnbase’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIBNr0b/R.INSTALL3caca9329953c/MSnbase/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Spectrum1_class.c -o Spectrum1_class.o Spectrum1_class.c:8:13: warning: unused function '_new_Spectrum1' [-Wunused-function] 8 | static SEXP _new_Spectrum1(SEXP msLevel, SEXP peaksCount, SEXP rt, | ^~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Spectrum2_class.c -o Spectrum2_class.o Spectrum2_class.c:9:13: warning: unused function '_new_Spectrum2' [-Wunused-function] 9 | static SEXP _new_Spectrum2(SEXP msLevel, SEXP peaksCount, SEXP rt, | ^~~~~~~~~~~~~~ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imp_neighbour_avg.cpp -o imp_neighbour_avg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o utils.c:92:15: warning: unused variable 'ret' [-Wunused-variable] 92 | int i1, i2, ret; | ^~~ utils.c:107:15: warning: unused variable 'ret' [-Wunused-variable] 107 | int i1, i2, ret; | ^~~ utils.c:123:18: warning: unused variable 'ret' [-Wunused-variable] 123 | double d1, d2, ret; | ^~~ utils.c:133:18: warning: unused variable 'ret' [-Wunused-variable] 133 | double d1, d2, ret; | ^~~ utils.c:121:12: warning: unused function 'compar_double_asc_order' [-Wunused-function] 121 | static int compar_double_asc_order(const void *p1, const void *p2) | ^~~~~~~~~~~~~~~~~~~~~~~ utils.c:131:12: warning: unused function 'compar_double_desc_order' [-Wunused-function] 131 | static int compar_double_desc_order(const void *p1, const void *p2) | ^~~~~~~~~~~~~~~~~~~~~~~~ 6 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o MSnbase.so RcppExports.o Spectrum1_class.o Spectrum2_class.o imp_neighbour_avg.o utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIBNr0b/R.INSTALL3caca9329953c/MSnbase/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-MSnbase/00new/MSnbase/libs ** R ** data *** moving datasets to lazyload DB H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f8cc8f67191 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f8cc93339e3 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f8cc9321faa in H5T__register /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f8cc930a3da in H5T__register_int /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f8cc930106d in H5T__init_package /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f8cc92f9e70 in H5T_init /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f8cc8b0ee62 in H5_init_library /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f8cc8b1507c in H5open /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f8cc8a93476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7f8cc819ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7f8cc819ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7f8ced57b29d in call_init elf/dl-init.c:74:3 #12 0x7f8ced57b29d in call_init elf/dl-init.c:26:1 #13 0x7f8ced57b38b in _dl_init elf/dl-init.c:121:5 #14 0x7f8ced578535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7f8ced581f2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7f8ced5784a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7f8ced5822a7 in _dl_open elf/dl-open.c:880:17 #18 0x7f8cebe97f97 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7f8ced5784a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7f8ced5785ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7f8cebe97aa6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7f8cebe98048 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7f8cebe98048 in dlopen dlfcn/dlopen.c:81:12 #24 0x5574ee1ee2f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7f8cec7127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7f8cec711bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7f8cecaed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7f8cecaa1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7f8cecaa061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7f8cecaa251f in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #31 0x7f8cecaa074e in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #32 0x7f8cecaf6cc2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #33 0x7f8cecaa1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #34 0x7f8cecaa061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #35 0x7f8cecaaad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #36 0x7f8cecaa686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #37 0x7f8cecaa0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #38 0x7f8cecaa0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #39 0x7f8cecdae001 in R_FindNamespace1 /home/hornik/src/R/src/main/serialize.c:1793:11 #40 0x7f8cecdae001 in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:1926:6 #41 0x7f8cecdaf2d0 in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #42 0x7f8cecdaf2d0 in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:1941:20 #43 0x7f8cecdaf2d0 in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #44 0x7f8cecdaf2d0 in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:1941:20 #45 0x7f8cecdaf2d0 in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #46 0x7f8cecdaf2d0 in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:1941:20 #47 0x7f8cecdacf64 in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #48 0x7f8cecdacf64 in ReadItem_Iterative /home/hornik/src/R/src/main/serialize.c:1837:12 #49 0x7f8cecdacf64 in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:1963:9 #50 0x7f8cecdb198d in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #51 0x7f8cecdb198d in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:2107:30 #52 0x7f8cecdacf64 in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #53 0x7f8cecdacf64 in ReadItem_Iterative /home/hornik/src/R/src/main/serialize.c:1837:12 #54 0x7f8cecdacf64 in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:1963:9 #55 0x7f8cecd9cff0 in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #56 0x7f8cecd9cff0 in R_Unserialize /home/hornik/src/R/src/main/serialize.c:2277:12 #57 0x7f8cecd5b0ce in do_loadFromConn2 /home/hornik/src/R/src/main/saveload.c:2491:25 #58 0x7f8cecaed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #59 0x7f8cecaa1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #60 0x7f8cecaa061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #61 0x7f8cecaaad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #62 0x7f8cecaa686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #63 0x7f8cecaa0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #64 0x7f8cecaa0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #65 0x7f8cecbe4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #66 0x7f8cecbe7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #67 0x7f8cecbe75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #68 0x7f8cecbe785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #69 0x5574ee26ddd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #70 0x7f8cebe33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #71 0x7f8cebe33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #72 0x5574ee18a370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 Creating a new generic function for ‘trimws’ in package ‘MSnbase’ in method for ‘coerce’ with signature ‘"IBSpectra","MSnSet"’: no definition for class “IBSpectra” in method for ‘plotMzDelta’ with signature ‘"mzRramp"’: no definition for class “mzRramp” ** inst ** byte-compile and prepare package for lazy loading H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f2553567191 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f25539339e3 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f2553921faa in H5T__register /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f255390a3da in H5T__register_int /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f255390106d in H5T__init_package /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f25538f9e70 in H5T_init /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f255310ee62 in H5_init_library /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f255311507c in H5open /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f2553093476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7f255279ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7f255279ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7f257141329d in call_init elf/dl-init.c:74:3 #12 0x7f257141329d in call_init elf/dl-init.c:26:1 #13 0x7f257141338b in _dl_init elf/dl-init.c:121:5 #14 0x7f2571410535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7f2571419f2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7f25714104a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7f257141a2a7 in _dl_open elf/dl-open.c:880:17 #18 0x7f256fc97f97 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7f25714104a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7f25714105ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7f256fc97aa6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7f256fc98048 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7f256fc98048 in dlopen dlfcn/dlopen.c:81:12 #24 0x558dc9a4b2f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7f25705127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7f2570511bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7f25708ed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7f25708a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7f25708a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7f25708aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #31 0x7f25708a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #32 0x7f25708a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #33 0x7f25708a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7f25708a251f in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #35 0x7f257093d8af in getvar /home/hornik/src/R/src/main/eval.c:5839:6 #36 0x7f257090d376 in bcEval_loop /home/hornik/src/R/src/main/eval.c:7852:20 #37 0x7f25708a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #38 0x7f25708a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #39 0x7f25708aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #40 0x7f25708a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #41 0x7f25708a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #42 0x7f25708a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #43 0x7f25709e4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #44 0x7f25709e7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #45 0x7f25709e75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #46 0x7f25709e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #47 0x558dc9acadd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #48 0x7f256fc33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #49 0x7f256fc33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #50 0x558dc99e7370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 Creating a new generic function for ‘trimws’ in package ‘MSnbase’ in method for ‘coerce’ with signature ‘"IBSpectra","MSnSet"’: no definition for class “IBSpectra” in method for ‘plotMzDelta’ with signature ‘"mzRramp"’: no definition for class “mzRramp” H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f2553562679 in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f25538d9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f2553561dd7 in H5I_clear_type /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f255390c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f255310ff61 in H5_term_library /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f25531151a0 in H5close /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7f2553092fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7f256fc4c260 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7f256fc4c319 in exit stdlib/exit.c:138:3 #9 0x7f2570d971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7f2570da1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7f25709e75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7f25709e75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7f25709e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x558dc9acadd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7f256fc33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7f256fc33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x558dc99e7370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7ff248367191 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7ff2487339e3 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7ff248721faa in H5T__register /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7ff24870a3da in H5T__register_int /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7ff24870106d in H5T__init_package /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7ff2486f9e70 in H5T_init /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7ff247f0ee62 in H5_init_library /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7ff247f1507c in H5open /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7ff247e93476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7ff24759ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7ff24759ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7ff26618029d in call_init elf/dl-init.c:74:3 #12 0x7ff26618029d in call_init elf/dl-init.c:26:1 #13 0x7ff26618038b in _dl_init elf/dl-init.c:121:5 #14 0x7ff26617d535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7ff266186f2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7ff26617d4a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7ff2661872a7 in _dl_open elf/dl-open.c:880:17 #18 0x7ff264a97f97 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7ff26617d4a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7ff26617d5ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7ff264a97aa6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7ff264a98048 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7ff264a98048 in dlopen dlfcn/dlopen.c:81:12 #24 0x556eadac42f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7ff2653127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7ff265311bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7ff2656ed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7ff2656a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7ff2656a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7ff2656aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #31 0x7ff2656a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #32 0x7ff2656a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #33 0x7ff2656a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7ff2657e4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #35 0x7ff2657e7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #36 0x7ff2657e75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #37 0x7ff2657e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #38 0x556eadb43dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #39 0x7ff264a33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #40 0x7ff264a33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #41 0x556eada60370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7ff248362679 in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7ff2486d9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7ff248361dd7 in H5I_clear_type /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7ff24870c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7ff247f0ff61 in H5_term_library /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7ff247f151a0 in H5close /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7ff247e92fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7ff264a4c260 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7ff264a4c319 in exit stdlib/exit.c:138:3 #9 0x7ff265b971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7ff265ba1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7ff2657e75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7ff2657e75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7ff2657e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x556eadb43dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7ff264a33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7ff264a33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x556eada60370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f1495167191 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f14955339e3 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f1495521faa in H5T__register /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f149550a3da in H5T__register_int /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f149550106d in H5T__init_package /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f14954f9e70 in H5T_init /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f1494d0ee62 in H5_init_library /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f1494d1507c in H5open /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f1494c93476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7f149439ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7f149439ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7f14b2fd229d in call_init elf/dl-init.c:74:3 #12 0x7f14b2fd229d in call_init elf/dl-init.c:26:1 #13 0x7f14b2fd238b in _dl_init elf/dl-init.c:121:5 #14 0x7f14b2fcf535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7f14b2fd8f2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7f14b2fcf4a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7f14b2fd92a7 in _dl_open elf/dl-open.c:880:17 #18 0x7f14b1897f97 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7f14b2fcf4a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7f14b2fcf5ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7f14b1897aa6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7f14b1898048 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7f14b1898048 in dlopen dlfcn/dlopen.c:81:12 #24 0x564b939a02f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7f14b21127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7f14b2111bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7f14b24ed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7f14b24a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7f14b24a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7f14b24aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #31 0x7f14b24a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #32 0x7f14b24a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #33 0x7f14b24a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7f14b25e4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #35 0x7f14b25e7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #36 0x7f14b25e75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #37 0x7f14b25e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #38 0x564b93a1fdd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #39 0x7f14b1833d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #40 0x7f14b1833e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #41 0x564b9393c370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f1495162679 in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f14954d9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f1495161dd7 in H5I_clear_type /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f149550c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f1494d0ff61 in H5_term_library /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f1494d151a0 in H5close /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7f1494c92fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7f14b184c260 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7f14b184c319 in exit stdlib/exit.c:138:3 #9 0x7f14b29971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7f14b29a1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7f14b25e75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7f14b25e75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7f14b25e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x564b93a1fdd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7f14b1833d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7f14b1833e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x564b9393c370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** testing if installed package keeps a record of temporary installation path * DONE (MSnbase) H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f8cc8f62679 in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f8cc92d9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f8cc8f61dd7 in H5I_clear_type /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f8cc930c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f8cc8b0ff61 in H5_term_library /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f8cc8b151a0 in H5close /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7f8cc8a92fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/Rtmpx3cFKN/R.INSTALL3ba6f4abb0c07/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7f8cebe4c260 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7f8cebe4c319 in exit stdlib/exit.c:138:3 #9 0x7f8cecf971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7f8cecfa1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7f8cecbe75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7f8cecbe75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7f8cecbe785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x5574ee26ddd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7f8cebe33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7f8cebe33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x5574ee18a370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 begin installing package ‘xcms’ make: *** [Makefile:795: xcms.ts] Error 1 make: Target 'all' not remade because of errors. * installing *source* package ‘xcms’ ... ** this is package ‘xcms’ version ‘4.4.0’ ** package ‘xcms’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1+b1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEVu73f/R.INSTALL3cbd631b339622/xcms/src' rm -f massifquant/xcms_massifquant.o massifquant/TrMgr.o massifquant/Tracker.o massifquant/SegProc.o massifquant/DataKeeper.o massifquant/OpOverload.o obiwarp/mat.o obiwarp/vec.o obiwarp/xcms_dynprog.o obiwarp/xcms_lmat.o xcms_obiwarp.o fastMatch.o mzClust_hclust.o mzROI.o util.o xcms.o binners.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c massifquant/xcms_massifquant.cpp -o massifquant/xcms_massifquant.o massifquant/xcms_massifquant.cpp:62:9: error: use of undeclared identifier 'error' 62 | error("Error in scanrange \n"); | ^ massifquant/xcms_massifquant.cpp:115:26: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'? 115 | PROTECT(list_names = allocVector(STRSXP, N_NAMES)); | ^~~~~~~~~~~ | Rf_allocVector /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT' 388 | #define PROTECT(s) Rf_protect(s) | ^ /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here 1078 | SEXP Rf_allocVector(SEXPTYPE, R_xlen_t); | ^ massifquant/xcms_massifquant.cpp:117:40: error: use of undeclared identifier 'mkChar' 117 | SET_STRING_ELT(list_names, j, mkChar(names[j])); | ^ massifquant/xcms_massifquant.cpp:119:24: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'? 119 | PROTECT(peaklist = allocVector(VECSXP, busybody.getPicCounts())); | ^~~~~~~~~~~ | Rf_allocVector /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT' 388 | #define PROTECT(s) Rf_protect(s) | ^ /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here 1078 | SEXP Rf_allocVector(SEXPTYPE, R_xlen_t); | ^ massifquant/xcms_massifquant.cpp:125:29: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'? 125 | PROTECT(entrylist = allocVector(VECSXP, N_NAMES)); | ^~~~~~~~~~~ | Rf_allocVector /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT' 388 | #define PROTECT(s) Rf_protect(s) | ^ /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here 1078 | SEXP Rf_allocVector(SEXPTYPE, R_xlen_t); | ^ massifquant/xcms_massifquant.cpp:156:9: error: use of undeclared identifier 'setAttrib'; did you mean 'Rf_setAttrib'? 156 | setAttrib(entrylist, R_NamesSymbol, list_names); //attaching the vector names | ^~~~~~~~~ | Rf_setAttrib /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:580:6: note: 'Rf_setAttrib' declared here 580 | SEXP Rf_setAttrib(SEXP, SEXP, SEXP); | ^ 6 errors generated. make[1]: *** [/home/hornik/tmp/R-d-clang-xtra/etc/Makeconf:202: massifquant/xcms_massifquant.o] Error 1 make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEVu73f/R.INSTALL3cbd631b339622/xcms/src' ERROR: compilation failed for package ‘xcms’ * removing ‘/home/hornik/tmp/CRAN_special_clang-san/Library/xcms’ Warning in (function (pkgs, lib, repos = getOption("repos"), contriburl = contrib.url(repos, : installation of package ‘xcms’ failed Calls: -> do.call -> checking enviGCMS_0.7.4.tar.gz ... Depends: Package: enviGCMS Depends: R (>= 2.10) Imports: Rdisop, BiocParallel, grDevices, graphics, stats, utils, methods, animation (>= 2.2.3), RColorBrewer, mixtools, data.table, igraph Timings: user system elapsed enviGCMS 117.736 12.536 131.08 Results: Check status summary: ERROR Source packages 1 Check results summary: enviGCMS ... ERROR * checking dependencies in R code ... NOTE * checking examples ... [5s/5s] ERROR